Wall clock time and date at job start Tue Mar 31 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38262 * 119.99015 * 2 1 4 4 C 1.38227 * 120.05195 * 179.97438 * 3 2 1 5 5 C 1.38219 * 120.02402 * 0.25898 * 4 3 2 6 6 C 1.50699 * 120.00977 * 179.74165 * 5 4 3 7 7 S 1.81401 * 109.46945 * 89.99938 * 6 5 4 8 8 O 1.42100 * 110.54516 * 291.61833 * 7 6 5 9 9 O 1.42098 * 110.54486 * 68.37555 * 7 6 5 10 10 N 1.65599 * 104.44853 * 179.97438 * 7 6 5 11 11 C 1.46500 * 120.00155 * 64.99693 * 10 7 6 12 12 C 1.50696 * 109.47206 * 164.99878 * 11 10 7 13 13 O 1.21294 * 120.00245 * 0.02562 * 12 11 10 14 14 N 1.34786 * 120.00242 * 180.02562 * 12 11 10 15 15 C 1.37091 * 120.00124 * 180.02562 * 14 12 11 16 16 H 1.08001 * 120.00317 * 0.02562 * 15 14 12 17 17 C 1.38953 * 119.99784 * 180.02562 * 15 14 12 18 18 N 1.31414 * 119.99929 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99956 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46885 * 90.00767 * 19 17 15 21 21 H 1.48502 * 109.46820 * 209.99957 * 19 17 15 22 22 H 1.48495 * 109.47274 * 330.00355 * 19 17 15 23 23 C 1.38438 * 119.97312 * 359.48405 * 5 4 3 24 24 F 1.35104 * 120.02404 * 180.25480 * 23 5 4 25 25 C 1.38177 * 119.98498 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.47014 * 90.00105 * 1 2 3 27 27 H 1.08997 * 109.47614 * 210.00522 * 1 2 3 28 28 H 1.09002 * 109.47087 * 330.00369 * 1 2 3 29 29 H 1.07999 * 119.97792 * 359.95482 * 3 2 1 30 30 H 1.08002 * 119.98464 * 179.97438 * 4 3 2 31 31 H 1.09006 * 109.46707 * 209.99462 * 6 5 4 32 32 H 1.08995 * 109.47488 * 329.99993 * 6 5 4 33 33 H 0.97008 * 120.00041 * 244.99836 * 10 7 6 34 34 H 1.08990 * 109.47501 * 285.00357 * 11 10 7 35 35 H 1.09004 * 109.47146 * 45.00363 * 11 10 7 36 36 H 0.97004 * 119.99472 * 0.02562 * 14 12 11 37 37 H 0.97000 * 120.00100 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.01256 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5804 1.1990 0.0005 5 6 4.2733 0.0030 -0.0043 6 6 5.7802 0.0051 -0.0096 7 16 6.3909 0.0024 1.6985 8 8 6.0955 1.2377 2.3356 9 8 6.0986 -1.2362 2.3306 10 7 8.0400 0.0042 1.5478 11 6 8.7196 1.1558 0.9492 12 6 10.1934 1.0843 1.2557 13 8 10.6329 0.1620 1.9093 14 7 11.0231 2.0454 0.8034 15 6 12.3639 1.9801 1.0818 16 1 12.7554 1.1584 1.6631 17 6 13.2192 2.9712 0.6160 18 7 14.5045 2.9084 0.8824 19 14 12.5422 4.3921 -0.3901 20 1 12.1542 5.5010 0.5182 21 1 13.5827 4.8685 -1.3364 22 1 11.3517 3.9364 -1.1517 23 6 3.5823 -1.1966 0.0010 24 9 4.2586 -2.3662 0.0015 25 6 2.1976 -1.1968 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6576 2.1325 -0.0007 30 1 4.1191 2.1350 0.0001 31 1 6.1429 -0.8835 -0.5265 32 1 6.1406 0.8965 -0.5229 33 1 8.5560 -0.7573 1.8558 34 1 8.5721 1.1439 -0.1306 35 1 8.3069 2.0762 1.3622 36 1 10.6715 2.7832 0.2810 37 1 15.1017 3.6000 0.5569 38 1 1.6575 -2.1321 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352507637.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:09 Heat of formation + Delta-G solvation = -127.738785 kcal Electronic energy + Delta-G solvation = -25347.076064 eV Core-core repulsion = 21231.282580 eV Total energy + Delta-G solvation = -4115.793484 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.22644 -39.74490 -38.66571 -37.12271 -35.97812 -34.78850 -34.50053 -33.82672 -31.80520 -31.02520 -30.09896 -27.41406 -25.76338 -24.18993 -23.34945 -21.68587 -19.73319 -19.42273 -18.72800 -17.78907 -17.45832 -17.13650 -16.82132 -16.29595 -16.01714 -15.70487 -15.43859 -15.07438 -14.79486 -14.54207 -14.48503 -14.07030 -13.88180 -13.59978 -13.40907 -13.22466 -12.70238 -12.50956 -12.48446 -12.43789 -12.42598 -12.12994 -12.02962 -12.01340 -11.79665 -11.56556 -11.28272 -11.20202 -10.68051 -10.07616 -9.72608 -9.57863 -9.30865 -8.92630 -8.75696 -8.31931 -6.41460 -3.94231 -0.02789 0.74083 0.77195 2.65717 2.94652 3.00690 3.06390 3.09544 3.51846 3.61152 3.76612 3.96780 3.97870 4.01233 4.27704 4.37114 4.43867 4.62774 4.77336 4.90146 4.99749 5.06177 5.10269 5.12057 5.18234 5.29310 5.51083 5.54787 5.59946 5.61768 5.65098 5.80063 5.94987 6.00246 6.41533 7.15027 7.43907 8.00427 8.44384 8.81469 9.28328 9.62775 10.70873 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.023278 B = 0.002681 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.581690 B =10442.006370 C =11105.926754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.051 4.051 3 C -0.129 4.129 4 C -0.072 4.072 5 C -0.132 4.132 6 C -0.592 4.592 7 S 2.613 3.387 8 O -0.948 6.948 9 O -0.947 6.947 10 N -1.099 6.099 11 C 0.098 3.902 12 C 0.444 3.556 13 O -0.569 6.569 14 N -0.579 5.579 15 C -0.310 4.310 16 H 0.122 0.878 17 C 0.044 3.956 18 N -0.874 5.874 19 Si 0.880 3.120 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.268 1.268 23 C 0.119 3.881 24 F -0.126 7.126 25 C -0.155 4.155 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.136 0.864 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.429 0.571 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.373 0.627 37 H 0.275 0.725 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.904 -1.815 -7.246 28.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.051 4.051 3 C -0.147 4.147 4 C -0.091 4.091 5 C -0.134 4.134 6 C -0.718 4.718 7 S 2.703 3.297 8 O -0.938 6.938 9 O -0.937 6.937 10 N -0.863 5.863 11 C -0.032 4.032 12 C 0.228 3.772 13 O -0.452 6.452 14 N -0.218 5.218 15 C -0.438 4.438 16 H 0.139 0.861 17 C -0.160 4.160 18 N -0.513 5.513 19 Si 0.707 3.293 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.194 1.194 23 C 0.098 3.902 24 F -0.105 7.105 25 C -0.174 4.174 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.154 0.846 30 H 0.161 0.839 31 H 0.165 0.835 32 H 0.166 0.834 33 H 0.268 0.732 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.206 0.794 37 H 0.086 0.914 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -27.875 -2.239 -6.080 28.618 hybrid contribution 0.323 0.679 -1.566 1.738 sum -27.552 -1.560 -7.647 28.636 Atomic orbital electron populations 1.20861 0.90049 1.03560 1.02936 1.19885 0.96737 0.92179 0.96338 1.21137 0.93744 0.98215 1.01632 1.21108 0.94549 0.97064 0.96364 1.19004 0.92586 0.93238 1.08603 1.29672 1.00604 1.13251 1.28275 1.05063 0.73109 0.74710 0.76770 1.93598 1.83617 1.45680 1.70898 1.93617 1.83169 1.44741 1.72170 1.55242 1.24983 1.28315 1.77732 1.21028 0.94738 0.89422 0.98050 1.19474 0.86695 0.85236 0.85781 1.90562 1.76574 1.35168 1.42896 1.42147 1.08552 1.22580 1.48512 1.19450 0.80009 1.11218 1.33158 0.86071 1.25078 0.95225 0.98001 0.97725 1.69620 1.02562 1.34553 1.44611 0.86661 0.79173 0.82913 0.80603 1.19369 1.20040 1.19353 1.17563 0.90301 0.80920 1.01399 1.91557 1.80089 1.45432 1.93385 1.21051 0.91750 0.99797 1.04790 0.90472 0.90963 0.90778 0.84570 0.83876 0.83503 0.83370 0.73183 0.90127 0.88473 0.79360 0.91393 0.84088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 10.01 36.01 0.36 -0.15 16 2 C -0.05 -0.37 5.88 -104.64 -0.62 -0.99 16 3 C -0.13 -0.95 9.70 -39.58 -0.38 -1.34 16 4 C -0.07 -0.63 9.70 -39.59 -0.38 -1.01 16 5 C -0.13 -1.39 5.15 -104.56 -0.54 -1.92 16 6 C -0.59 -5.81 6.02 36.00 0.22 -5.59 16 7 S 2.61 36.13 5.44 -107.50 -0.58 35.55 16 8 O -0.95 -15.14 17.50 -57.54 -1.01 -16.15 16 9 O -0.95 -15.98 18.08 -57.54 -1.04 -17.02 16 10 N -1.10 -16.56 5.82 -11.66 -0.07 -16.63 16 11 C 0.10 1.49 6.61 -5.20 -0.03 1.45 16 12 C 0.44 9.56 7.85 -10.98 -0.09 9.47 16 13 O -0.57 -14.62 15.30 5.55 0.08 -14.53 16 14 N -0.58 -13.09 5.09 -10.96 -0.06 -13.14 16 15 C -0.31 -8.45 10.16 -14.93 -0.15 -8.60 16 16 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 17 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 18 N -0.87 -24.81 13.96 55.50 0.77 -24.03 16 19 Si 0.88 18.45 27.74 -169.99 -4.71 13.73 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.27 -4.98 6.52 56.52 0.37 -4.61 16 23 C 0.12 1.31 7.24 -39.42 -0.29 1.03 16 24 F -0.13 -1.57 16.48 2.25 0.04 -1.54 16 25 C -0.16 -1.36 9.68 -39.52 -0.38 -1.74 16 26 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 28 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 29 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 30 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.15 1.27 7.65 -51.92 -0.40 0.88 16 32 H 0.15 0.99 8.09 -51.93 -0.42 0.57 16 33 H 0.43 7.01 7.66 -34.47 -0.26 6.75 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.10 1.30 7.70 -51.93 -0.40 0.90 16 36 H 0.37 7.18 5.76 -40.82 -0.24 6.95 16 37 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 348.82 15.07 5.26 5.26 Total: -1.00 -36.50 348.82 -7.92 -44.43 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -4.23 Total: 12.42 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -2.38 Total: -8.33 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.65 Total: -53.81 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -1.96 Total: -47.70 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -4.71 Total: 13.73 kcal Atomic # 16 Polarization: 36.13 SS G_CDS: -0.58 Total: 35.55 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.50 -7.92 -44.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352507637.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.314 kcal (2) G-P(sol) polarization free energy of solvation -36.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds