Wall clock time and date at job start Tue Mar 31 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38195 * 120.01152 * 2 1 4 4 C 1.38249 * 120.02249 * 179.97438 * 3 2 1 5 5 S 1.76198 * 119.97406 * 180.02562 * 4 3 2 6 6 O 1.42106 * 106.40024 * 336.45358 * 5 4 3 7 7 O 1.42105 * 106.40118 * 203.53976 * 5 4 3 8 8 N 1.65596 * 107.22309 * 89.99567 * 5 4 3 9 9 C 1.46506 * 119.99677 * 65.00118 * 8 5 4 10 10 C 1.50699 * 109.46928 * 165.00101 * 9 8 5 11 11 O 1.21297 * 119.99980 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00037 * 179.97438 * 10 9 8 13 13 C 1.37097 * 119.99944 * 179.97438 * 12 10 9 14 14 H 1.08003 * 120.00055 * 0.02562 * 13 12 10 15 15 C 1.38948 * 119.99682 * 180.02562 * 13 12 10 16 16 N 1.31416 * 120.00213 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99894 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47229 * 90.00155 * 17 15 13 19 19 H 1.48500 * 109.47256 * 210.00069 * 17 15 13 20 20 H 1.48506 * 109.46930 * 329.99910 * 17 15 13 21 21 C 1.38244 * 120.05106 * 0.29247 * 4 3 2 22 22 C 1.38206 * 120.02637 * 359.45314 * 21 4 3 23 23 C 1.50696 * 120.01439 * 180.25280 * 22 21 4 24 24 C 1.38457 * 120.01095 * 180.02562 * 2 1 3 25 25 F 1.35104 * 120.02759 * 0.02562 * 24 2 1 26 26 H 1.09004 * 109.46572 * 89.99823 * 1 2 3 27 27 H 1.08998 * 109.47501 * 210.00017 * 1 2 3 28 28 H 1.09006 * 109.47143 * 330.00708 * 1 2 3 29 29 H 1.07992 * 119.99097 * 0.02562 * 3 2 1 30 30 H 0.96996 * 120.00260 * 244.99697 * 8 5 4 31 31 H 1.09004 * 109.47073 * 284.99929 * 9 8 5 32 32 H 1.09000 * 109.47212 * 45.00012 * 9 8 5 33 33 H 0.96996 * 119.99844 * 0.02562 * 12 10 9 34 34 H 0.97002 * 120.00016 * 180.02562 * 16 15 13 35 35 H 1.08004 * 119.98625 * 179.70574 * 21 4 3 36 36 H 1.09000 * 109.47290 * 270.27471 * 23 22 21 37 37 H 1.09007 * 109.46837 * 30.26998 * 23 22 21 38 38 H 1.08990 * 109.46970 * 150.27309 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1967 0.0000 4 6 3.5807 1.1969 0.0005 5 16 4.4608 2.7234 0.0012 6 8 3.5787 3.6953 -0.5435 7 8 5.7441 2.4470 -0.5428 8 7 4.7049 3.1479 1.5831 9 6 5.5533 2.3176 2.4417 10 6 5.9127 3.0863 3.6871 11 8 5.5011 4.2168 3.8419 12 7 6.6915 2.5178 4.6288 13 6 7.0189 3.2174 5.7614 14 1 6.6524 4.2239 5.8993 15 6 7.8222 2.6314 6.7320 16 7 8.2686 1.4068 6.5639 17 14 8.2677 3.5843 8.2757 18 1 7.2464 3.3337 9.3242 19 1 9.5980 3.1408 8.7645 20 1 8.3130 5.0359 7.9656 21 6 4.2733 0.0005 -0.0050 22 6 3.5841 -1.1975 0.0003 23 6 4.3393 -2.5016 0.0000 24 6 2.1996 -1.1989 -0.0005 25 9 1.5248 -2.3694 -0.0016 26 1 -0.3632 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8901 0.5137 29 1 1.6583 2.1319 0.0004 30 1 4.2863 3.9463 1.9412 31 1 5.0146 1.4109 2.7172 32 1 6.4632 2.0505 1.9043 33 1 7.0209 1.6140 4.5047 34 1 8.8291 0.9976 7.2417 35 1 5.3533 0.0019 -0.0094 36 1 4.5215 -2.8157 -1.0278 37 1 5.2916 -2.3701 0.5139 38 1 3.7512 -3.2621 0.5135 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352513079.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:13 Heat of formation + Delta-G solvation = -140.858236 kcal Electronic energy + Delta-G solvation = -25674.595280 eV Core-core repulsion = 21558.232894 eV Total energy + Delta-G solvation = -4116.362386 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.39233 -39.61716 -38.47292 -37.23508 -35.85413 -34.70706 -34.13531 -33.74649 -32.15358 -31.38321 -27.83033 -27.28486 -27.14289 -24.36728 -23.21467 -21.68502 -19.70673 -19.35011 -18.17800 -17.97042 -17.72742 -17.26464 -17.12103 -16.22485 -15.90732 -15.55371 -14.83884 -14.59309 -14.45594 -14.33106 -13.87839 -13.85266 -13.77542 -13.63100 -13.54249 -13.49372 -12.67387 -12.54865 -12.43333 -12.39080 -12.15924 -12.08280 -11.99705 -11.94057 -11.57245 -11.43722 -11.15467 -11.02770 -10.46883 -10.32504 -9.66005 -9.47160 -9.27470 -9.12949 -8.63577 -8.11744 -6.53521 -3.95169 0.21137 0.49375 0.78530 2.77247 3.10463 3.13791 3.21563 3.27328 3.68582 3.73876 3.77221 4.04849 4.09546 4.25642 4.42528 4.76253 4.77979 4.84822 4.90714 5.00601 5.13537 5.22588 5.28575 5.31719 5.39851 5.50636 5.62751 5.63342 5.72658 5.76228 5.78843 5.79093 5.82283 6.23307 6.42008 7.19775 7.44796 7.91468 8.43891 9.03642 9.37141 9.85663 10.63445 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.014058 B = 0.003195 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.280833 B = 8761.521811 C = 9661.115626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.137 4.137 3 C 0.003 3.997 4 C -0.680 4.680 5 S 2.703 3.297 6 O -0.958 6.958 7 O -0.954 6.954 8 N -1.095 6.095 9 C 0.105 3.895 10 C 0.434 3.566 11 O -0.589 6.589 12 N -0.552 5.552 13 C -0.304 4.304 14 H 0.106 0.894 15 C 0.026 3.974 16 N -0.896 5.896 17 Si 0.932 3.068 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.268 1.268 21 C 0.001 3.999 22 C -0.135 4.135 23 C -0.116 4.116 24 C 0.147 3.853 25 F -0.129 7.129 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.151 0.849 30 H 0.429 0.571 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.395 0.605 34 H 0.274 0.726 35 H 0.153 0.847 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.113 -8.734 -13.313 19.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.139 4.139 3 C -0.016 4.016 4 C -0.765 4.765 5 S 2.790 3.210 6 O -0.948 6.948 7 O -0.944 6.944 8 N -0.860 5.860 9 C -0.026 4.026 10 C 0.219 3.781 11 O -0.474 6.474 12 N -0.187 5.187 13 C -0.434 4.434 14 H 0.123 0.877 15 C -0.177 4.177 16 N -0.537 5.537 17 Si 0.759 3.241 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.193 1.193 21 C -0.018 4.018 22 C -0.136 4.136 23 C -0.173 4.173 24 C 0.127 3.873 25 F -0.107 7.107 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.168 0.832 30 H 0.268 0.732 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.229 0.771 34 H 0.084 0.916 35 H 0.171 0.829 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.930 -7.861 -13.860 19.323 hybrid contribution -0.204 -0.791 1.240 1.485 sum -11.134 -8.652 -12.620 18.923 Atomic orbital electron populations 1.20764 0.89353 1.03884 1.03161 1.20033 0.97530 0.91737 1.04607 1.20692 0.91783 0.98259 0.90860 1.31183 1.06373 1.20890 1.18101 1.01675 0.73813 0.73167 0.72354 1.93588 1.66917 1.58022 1.76303 1.93592 1.38917 1.85425 1.76496 1.55083 1.62664 1.38024 1.30201 1.20971 0.95134 0.93394 0.93070 1.19580 0.84946 0.88210 0.85406 1.90513 1.58227 1.19395 1.79288 1.41808 1.43222 1.16479 1.17208 1.19737 1.28624 1.00077 0.94928 0.87661 1.25304 0.96553 0.96071 0.99739 1.69606 1.34738 1.13230 1.36080 0.85821 0.77771 0.79746 0.80748 1.20310 1.20812 1.19291 1.20768 1.00661 0.89552 0.90868 1.20054 0.91848 0.97449 1.04275 1.20780 1.00464 0.92841 1.03210 1.17624 0.89616 0.80989 0.99040 1.91495 1.80212 1.45863 1.93124 0.90491 0.90933 0.90330 0.83170 0.73211 0.90228 0.88606 0.77125 0.91626 0.82950 0.90466 0.90064 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.84 36.01 0.35 -0.54 16 2 C -0.14 -1.42 5.89 -104.56 -0.62 -2.03 16 3 C 0.00 0.04 9.18 -39.59 -0.36 -0.33 16 4 C -0.68 -8.02 5.95 -39.57 -0.24 -8.26 16 5 S 2.70 37.01 5.74 -107.50 -0.62 36.40 16 6 O -0.96 -14.84 17.28 -57.17 -0.99 -15.83 16 7 O -0.95 -15.09 16.74 -57.17 -0.96 -16.05 16 8 N -1.09 -16.41 5.93 -11.65 -0.07 -16.48 16 9 C 0.10 1.68 6.70 -5.19 -0.03 1.64 16 10 C 0.43 9.57 7.85 -10.99 -0.09 9.48 16 11 O -0.59 -14.90 15.30 5.54 0.08 -14.82 16 12 N -0.55 -13.15 5.29 -10.96 -0.06 -13.20 16 13 C -0.30 -8.09 9.68 -14.93 -0.14 -8.24 16 14 H 0.11 2.94 7.16 -52.48 -0.38 2.56 16 15 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 16 N -0.90 -23.27 13.05 55.50 0.72 -22.54 16 17 Si 0.93 20.24 29.55 -169.99 -5.02 15.22 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 C 0.00 0.01 9.18 -39.59 -0.36 -0.36 16 22 C -0.13 -1.40 5.89 -104.55 -0.62 -2.02 16 23 C -0.12 -0.94 9.83 36.00 0.35 -0.59 16 24 C 0.15 1.59 7.18 -39.42 -0.28 1.30 16 25 F -0.13 -1.36 15.69 2.25 0.04 -1.32 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.54 7.64 -51.93 -0.40 0.14 16 28 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 29 H 0.15 1.41 7.61 -52.49 -0.40 1.01 16 30 H 0.43 6.71 7.70 -34.47 -0.27 6.45 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.10 1.39 7.75 -51.93 -0.40 0.98 16 33 H 0.40 8.85 7.90 -40.82 -0.32 8.53 16 34 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 35 H 0.15 1.45 7.61 -52.48 -0.40 1.05 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.58 8.09 -51.92 -0.42 0.16 16 38 H 0.07 0.57 7.64 -51.93 -0.40 0.17 16 LS Contribution 348.48 15.07 5.25 5.25 Total: -1.00 -33.02 348.48 -7.95 -40.97 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -4.20 Total: 11.77 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -2.13 Total: -9.36 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.60 Total: -52.23 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -1.86 Total: -46.69 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 37.01 SS G_CDS: -0.62 Total: 36.40 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.02 -7.95 -40.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352513079.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.893 kcal (2) G-P(sol) polarization free energy of solvation -33.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds