Wall clock time and date at job start Tue Mar 31 2020 05:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76204 * 102.99928 * 2 1 4 4 C 1.38970 * 120.07798 * 179.97438 * 3 2 1 5 5 C 1.38082 * 119.91979 * 180.02562 * 4 3 2 6 6 C 1.38305 * 120.08002 * 0.02562 * 5 4 3 7 7 S 1.76197 * 119.92154 * 179.72251 * 6 5 4 8 8 O 1.42103 * 106.40367 * 203.54140 * 7 6 5 9 9 O 1.42102 * 106.39956 * 336.45667 * 7 6 5 10 10 N 1.65604 * 107.22095 * 89.99767 * 7 6 5 11 11 C 1.46497 * 119.99562 * 64.99930 * 10 7 6 12 12 C 1.50707 * 109.46932 * 165.00110 * 11 10 7 13 13 O 1.21292 * 119.99521 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99934 * 179.97438 * 12 11 10 15 15 C 1.37096 * 119.99637 * 179.97438 * 14 12 11 16 16 H 1.08003 * 120.00356 * 0.02562 * 15 14 12 17 17 C 1.38952 * 120.00186 * 179.97438 * 15 14 12 18 18 N 1.31403 * 120.00579 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99625 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47418 * 89.99514 * 19 17 15 21 21 H 1.48495 * 109.47288 * 209.99843 * 19 17 15 22 22 H 1.48507 * 109.46969 * 329.99770 * 19 17 15 23 23 C 1.38304 * 120.15990 * 359.97438 * 6 5 4 24 24 C 1.38088 * 120.07968 * 0.02562 * 23 6 5 25 25 H 1.09004 * 109.46941 * 60.00241 * 1 2 3 26 26 H 1.08995 * 109.47396 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47660 * 300.00671 * 1 2 3 28 28 H 1.08001 * 120.04147 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.96446 * 179.97438 * 5 4 3 30 30 H 0.96996 * 119.99669 * 245.00211 * 10 7 6 31 31 H 1.08996 * 109.47259 * 285.00054 * 11 10 7 32 32 H 1.09002 * 109.47564 * 45.00300 * 11 10 7 33 33 H 0.96993 * 119.99820 * 0.02562 * 14 12 11 34 34 H 0.97005 * 120.00291 * 180.02562 * 18 17 15 35 35 H 1.07997 * 119.96251 * 180.02562 * 23 6 5 36 36 H 1.08003 * 120.03675 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5388 2.1250 0.0005 5 6 3.8457 3.4713 0.0011 6 6 2.8329 4.4131 0.0016 7 16 3.2292 6.1299 0.0097 8 8 2.1000 6.7999 0.5532 9 8 4.5354 6.2376 0.5588 10 7 3.3446 6.6139 -1.5699 11 6 2.1605 6.5882 -2.4321 12 6 2.4251 7.4012 -3.6732 13 8 3.4971 7.9485 -3.8224 14 7 1.4705 7.5200 -4.6172 15 6 1.7111 8.2600 -5.7459 16 1 2.6657 8.7474 -5.8788 17 6 0.7272 8.3820 -6.7195 18 7 0.9579 9.0909 -7.8016 19 14 -0.9236 7.5384 -6.4899 20 1 -1.8551 8.4564 -5.7865 21 1 -1.4868 7.1832 -7.8172 22 1 -0.7412 6.3048 -5.6834 23 6 1.5097 4.0107 0.0011 24 6 1.1953 2.6660 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 4.3302 1.3901 0.0005 29 1 4.8778 3.7893 0.0019 30 1 4.1961 6.9143 -1.9240 31 1 1.9376 5.5588 -2.7127 32 1 1.3109 7.0105 -1.8954 33 1 0.6131 7.0825 -4.4976 34 1 0.2709 9.1764 -8.4811 35 1 0.7214 4.7488 0.0011 36 1 0.1618 2.3525 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352533719.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:11 Heat of formation + Delta-G solvation = -76.512695 kcal Electronic energy + Delta-G solvation = -23054.369393 eV Core-core repulsion = 19371.177320 eV Total energy + Delta-G solvation = -3683.192072 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.054 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.41372 -38.66352 -37.25261 -35.87475 -34.78360 -33.82102 -31.97218 -31.81003 -31.57865 -29.37537 -27.41542 -24.19758 -23.86415 -23.16205 -19.77499 -19.57291 -18.71872 -18.55424 -17.83906 -17.27263 -16.33792 -15.63810 -15.59821 -15.37831 -15.11685 -14.94934 -14.67112 -14.40064 -14.39263 -14.07409 -13.44933 -13.41143 -13.24989 -12.73254 -12.68212 -12.50257 -12.43228 -12.11916 -12.05836 -11.81167 -11.79187 -11.28657 -11.16214 -10.72667 -10.68511 -10.54415 -10.08114 -9.72579 -9.53443 -9.46907 -8.76976 -8.32288 -8.04488 -6.41956 -3.94639 0.18286 0.46823 0.90739 0.94278 1.81379 2.81978 2.94271 2.99986 3.08773 3.16883 3.52883 3.73513 4.00711 4.12676 4.38875 4.43660 4.51772 4.52881 4.55483 4.84572 5.01326 5.10540 5.12488 5.18513 5.22235 5.50811 5.55447 5.55982 5.62262 5.70982 5.72651 5.96397 6.35455 7.13849 7.43486 8.00125 8.43975 8.81055 9.28101 9.62480 10.70413 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.003490 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.487528 B = 8019.870102 C = 9713.318921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 S -0.102 6.102 3 C -0.035 4.035 4 C -0.124 4.124 5 C 0.004 3.996 6 C -0.683 4.683 7 S 2.701 3.299 8 O -0.957 6.957 9 O -0.957 6.957 10 N -1.096 6.096 11 C 0.103 3.897 12 C 0.444 3.556 13 O -0.570 6.570 14 N -0.579 5.579 15 C -0.310 4.310 16 H 0.122 0.878 17 C 0.045 3.955 18 N -0.875 5.875 19 Si 0.879 3.121 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.268 1.268 23 C 0.001 3.999 24 C -0.158 4.158 25 H 0.089 0.911 26 H 0.111 0.889 27 H 0.088 0.912 28 H 0.138 0.862 29 H 0.148 0.852 30 H 0.429 0.571 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.373 0.627 34 H 0.275 0.725 35 H 0.146 0.854 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.060 -18.969 16.482 25.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.142 5.858 3 C -0.148 4.148 4 C -0.148 4.148 5 C -0.017 4.017 6 C -0.772 4.772 7 S 2.789 3.211 8 O -0.947 6.947 9 O -0.948 6.948 10 N -0.861 5.861 11 C -0.028 4.028 12 C 0.229 3.771 13 O -0.453 6.453 14 N -0.218 5.218 15 C -0.438 4.438 16 H 0.140 0.860 17 C -0.159 4.159 18 N -0.514 5.514 19 Si 0.705 3.295 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.194 1.194 23 C -0.020 4.020 24 C -0.183 4.183 25 H 0.108 0.892 26 H 0.130 0.870 27 H 0.107 0.893 28 H 0.156 0.844 29 H 0.165 0.835 30 H 0.269 0.731 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.206 0.794 34 H 0.086 0.914 35 H 0.164 0.836 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.849 -19.163 16.942 25.645 hybrid contribution -2.114 -0.188 -0.566 2.197 sum -3.963 -19.351 16.376 25.658 Atomic orbital electron populations 1.23770 0.94270 1.07566 1.06217 1.85645 1.06953 1.02172 1.91008 1.22127 0.97053 0.97035 0.98625 1.20879 0.94437 0.96323 1.03210 1.20895 0.98956 0.91938 0.89954 1.31111 1.00778 1.26337 1.19013 1.01672 0.73577 0.73534 0.72271 1.93584 1.53159 1.71487 1.76466 1.93591 1.38755 1.86394 1.76026 1.55105 1.19136 1.81479 1.30344 1.20983 0.87923 1.00951 0.92952 1.19478 0.86039 0.86541 0.85048 1.90556 1.25078 1.50864 1.78783 1.42138 1.14044 1.46618 1.18966 1.19452 1.03772 1.26638 0.93973 0.86044 1.25062 0.98366 0.97115 0.95392 1.69613 1.34726 1.38626 1.08399 0.86680 0.84171 0.79817 0.78812 1.19350 1.20032 1.19378 1.20883 0.94696 0.96275 0.90146 1.21276 0.98615 0.93105 1.05302 0.89207 0.87010 0.89330 0.84433 0.83456 0.73125 0.90134 0.88542 0.79376 0.91391 0.83613 0.84849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.15 101.05 0.92 0.21 16 2 S -0.10 -0.80 22.56 -107.50 -2.43 -3.22 16 3 C -0.03 -0.33 6.11 -39.04 -0.24 -0.57 16 4 C -0.12 -1.20 9.79 -39.37 -0.39 -1.59 16 5 C 0.00 0.04 9.51 -39.61 -0.38 -0.34 16 6 C -0.68 -7.78 5.95 -39.53 -0.24 -8.02 16 7 S 2.70 36.21 5.74 -107.50 -0.62 35.59 16 8 O -0.96 -14.79 16.74 -57.17 -0.96 -15.74 16 9 O -0.96 -14.76 17.28 -57.17 -0.99 -15.75 16 10 N -1.10 -15.97 5.93 -11.66 -0.07 -16.04 16 11 C 0.10 1.56 6.70 -5.19 -0.03 1.52 16 12 C 0.44 9.47 7.85 -10.98 -0.09 9.38 16 13 O -0.57 -14.36 15.30 5.55 0.08 -14.27 16 14 N -0.58 -13.02 5.09 -10.96 -0.06 -13.08 16 15 C -0.31 -8.41 10.16 -14.93 -0.15 -8.56 16 16 H 0.12 3.78 7.39 -52.48 -0.39 3.39 16 17 C 0.04 1.18 5.50 -17.47 -0.10 1.08 16 18 N -0.87 -24.72 13.96 55.50 0.77 -23.95 16 19 Si 0.88 18.41 27.74 -169.99 -4.71 13.69 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.27 -5.01 6.52 56.52 0.37 -4.64 16 23 C 0.00 0.01 9.51 -39.61 -0.38 -0.36 16 24 C -0.16 -1.45 9.36 -39.37 -0.37 -1.82 16 25 H 0.09 0.40 7.75 -51.92 -0.40 0.00 16 26 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.09 0.36 7.75 -51.93 -0.40 -0.04 16 28 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 29 H 0.15 1.34 7.61 -52.48 -0.40 0.95 16 30 H 0.43 6.60 7.70 -34.47 -0.27 6.33 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 1.28 7.75 -51.93 -0.40 0.87 16 33 H 0.37 7.19 5.76 -40.82 -0.24 6.96 16 34 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.15 1.27 7.61 -52.49 -0.40 0.87 16 36 H 0.13 0.88 5.88 -52.48 -0.31 0.57 16 LS Contribution 338.53 15.07 5.10 5.10 Total: -1.00 -35.09 338.53 -8.93 -44.02 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -3.64 Total: 12.70 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -1.43 Total: -9.05 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.65 Total: -53.06 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -1.86 Total: -45.76 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -4.71 Total: 13.69 kcal Atomic # 16 Polarization: 35.41 SS G_CDS: -3.04 Total: 32.37 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.09 -8.93 -44.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352533719.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.494 kcal (2) G-P(sol) polarization free energy of solvation -35.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds