Wall clock time and date at job start Tue Mar 31 2020 06:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46961 * 2 1 4 4 C 1.50697 * 109.47217 * 239.99523 * 2 1 3 5 5 H 1.08001 * 120.00040 * 245.46302 * 4 2 1 6 6 C 1.37877 * 120.00057 * 65.46521 * 4 2 1 7 7 N 1.31519 * 119.99869 * 9.55495 * 6 4 2 8 8 Si 1.86794 * 119.99998 * 189.55849 * 6 4 2 9 9 H 1.48504 * 109.47413 * 84.99254 * 8 6 4 10 10 H 1.48504 * 109.47330 * 204.99188 * 8 6 4 11 11 H 1.48498 * 109.47435 * 324.99361 * 8 6 4 12 12 N 1.46502 * 109.46937 * 119.99805 * 2 1 3 13 13 C 1.34780 * 119.99847 * 275.00212 * 12 2 1 14 14 O 1.21284 * 120.00075 * 359.97438 * 13 12 2 15 15 C 1.50697 * 120.00212 * 180.02562 * 13 12 2 16 16 N 1.46495 * 109.47662 * 179.97438 * 15 13 12 17 17 S 1.65599 * 120.00470 * 164.99966 * 16 15 13 18 18 O 1.42094 * 106.40590 * 178.54263 * 17 16 15 19 19 O 1.42102 * 106.39913 * 311.45829 * 17 16 15 20 20 C 1.76196 * 107.21605 * 64.99703 * 17 16 15 21 21 C 1.38267 * 119.99267 * 269.72765 * 20 17 16 22 22 C 1.38220 * 120.05281 * 179.72857 * 21 20 17 23 23 C 1.38221 * 120.02428 * 0.54882 * 22 21 20 24 24 C 1.38437 * 119.97790 * 359.72651 * 23 22 21 25 25 F 1.35095 * 120.02832 * 180.02562 * 24 23 22 26 26 C 1.38180 * 119.98416 * 90.00505 * 20 17 16 27 27 H 1.08996 * 109.46715 * 303.68529 * 1 2 3 28 28 H 1.09005 * 109.46844 * 63.68135 * 1 2 3 29 29 H 1.08996 * 109.47156 * 183.67881 * 1 2 3 30 30 H 0.96999 * 120.00039 * 180.02562 * 7 6 4 31 31 H 0.96992 * 120.00532 * 95.00002 * 12 2 1 32 32 H 1.09000 * 109.47027 * 299.99913 * 15 13 12 33 33 H 1.08999 * 109.47130 * 59.99264 * 15 13 12 34 34 H 0.97003 * 119.99560 * 345.00307 * 16 15 13 35 35 H 1.08004 * 119.96873 * 359.97438 * 21 20 17 36 36 H 1.08004 * 119.98681 * 180.27070 * 22 21 20 37 37 H 1.08001 * 120.01166 * 179.74987 * 23 22 21 38 38 H 1.08000 * 120.01488 * 359.97438 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5786 -1.6372 -1.1337 6 6 1.7947 -0.1775 -2.4796 7 7 1.2994 1.0355 -2.5936 8 14 2.1761 -1.1783 -4.0100 9 1 1.0241 -2.0613 -4.3239 10 1 2.4229 -0.2618 -5.1521 11 1 3.3845 -2.0076 -3.7708 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1587 2.4115 15 6 2.6498 -0.7283 3.5876 16 7 2.6995 0.2131 4.7089 17 16 2.8526 -0.3515 6.2581 18 8 2.9049 0.7927 7.0990 19 8 1.8854 -1.3819 6.4070 20 6 4.4296 -1.1285 6.3764 21 6 4.5587 -2.4765 6.0969 22 6 5.7961 -3.0860 6.1839 23 6 6.9041 -2.3510 6.5616 24 6 6.7752 -1.0026 6.8473 25 9 7.8575 -0.2832 7.2160 26 6 5.5358 -0.3917 6.7542 27 1 -0.3632 0.5700 0.8551 28 1 -0.3633 0.4557 -0.9212 29 1 -0.3633 -1.0255 0.0659 30 1 1.1319 1.4103 -3.4724 31 1 2.2490 -1.6317 1.1528 32 1 1.9776 -1.5506 3.8327 33 1 3.6491 -1.1202 3.3980 34 1 2.6426 1.1673 4.5438 35 1 3.6925 -3.0526 5.8064 36 1 5.8965 -4.1380 5.9610 37 1 7.8702 -2.8285 6.6334 38 1 5.4341 0.6602 6.9765 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353781482.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:38 Heat of formation + Delta-G solvation = -157.655168 kcal Electronic energy + Delta-G solvation = -25395.626802 eV Core-core repulsion = 21278.536046 eV Total energy + Delta-G solvation = -4117.090755 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.02923 -40.64703 -39.99278 -38.44889 -37.06506 -36.88567 -35.60989 -34.30703 -32.52766 -31.64094 -31.25039 -27.85695 -27.23755 -24.69787 -23.87967 -23.10086 -21.28163 -20.77137 -19.62562 -19.28640 -18.39131 -17.82857 -17.40598 -17.31865 -17.15616 -16.89257 -16.77153 -16.71569 -16.27005 -16.03098 -15.34653 -14.94724 -14.54680 -14.39981 -14.30188 -14.17645 -13.76962 -13.63294 -13.42318 -13.31704 -13.30389 -13.23477 -12.94891 -12.86961 -12.83667 -12.65546 -12.32698 -12.12360 -11.88967 -11.13306 -10.88299 -10.64488 -10.55122 -10.53921 -9.95657 -9.75914 -8.18290 -6.31348 -0.82234 -0.41190 0.01207 1.47721 1.48949 1.58069 1.76237 1.79034 2.26054 2.38675 2.62065 2.65577 3.00560 3.14868 3.34537 3.65816 3.76153 3.84543 3.97048 4.19944 4.28814 4.38272 4.43310 4.60566 4.77132 4.79507 4.87292 4.91782 5.02550 5.07186 5.10464 5.44142 5.61711 5.66284 5.69020 5.85447 5.90583 6.05675 6.77755 6.94554 7.34942 7.54623 8.90844 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.015887 B = 0.002822 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.032441 B = 9919.231159 C =10806.745012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.268 3.732 3 H 0.004 0.996 4 C -0.546 4.546 5 H 0.079 0.921 6 C 0.015 3.985 7 N -0.920 5.920 8 Si 0.969 3.031 9 H -0.271 1.271 10 H -0.292 1.292 11 H -0.260 1.260 12 N -0.699 5.699 13 C 0.495 3.505 14 O -0.593 6.593 15 C 0.100 3.900 16 N -1.107 6.107 17 S 2.723 3.277 18 O -0.984 6.984 19 O -0.968 6.968 20 C -0.655 4.655 21 C -0.034 4.034 22 C -0.101 4.101 23 C -0.092 4.092 24 C 0.059 3.941 25 F -0.144 7.144 26 C -0.070 4.070 27 H 0.016 0.984 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.264 0.736 31 H 0.411 0.589 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.426 0.574 35 H 0.172 0.828 36 H 0.183 0.817 37 H 0.170 0.830 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.787 -12.818 17.875 24.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.164 3.836 3 H 0.022 0.978 4 C -0.584 4.584 5 H 0.097 0.903 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.793 3.207 9 H -0.197 1.197 10 H -0.218 1.218 11 H -0.184 1.184 12 N -0.349 5.349 13 C 0.280 3.720 14 O -0.474 6.474 15 C -0.029 4.029 16 N -0.869 5.869 17 S 2.814 3.186 18 O -0.974 6.974 19 O -0.958 6.958 20 C -0.744 4.744 21 C -0.054 4.054 22 C -0.119 4.119 23 C -0.111 4.111 24 C 0.039 3.961 25 F -0.123 7.123 26 C -0.090 4.090 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.247 0.753 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.264 0.736 35 H 0.189 0.811 36 H 0.200 0.800 37 H 0.188 0.812 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.953 -11.941 18.458 24.131 hybrid contribution 0.924 0.413 -1.215 1.582 sum 10.877 -11.527 17.242 23.420 Atomic orbital electron populations 1.21866 0.98502 0.99561 0.99058 1.18366 0.90824 0.92468 0.81966 0.97773 1.21539 1.37019 1.09092 0.90730 0.90262 1.25805 0.94861 0.95422 1.02471 1.70137 1.45211 1.15603 1.24878 0.85413 0.79051 0.78262 0.77940 1.19684 1.21813 1.18418 1.46168 1.64834 1.14540 1.09352 1.21086 0.77876 0.87308 0.85699 1.90651 1.52980 1.18302 1.85459 1.21330 1.05531 0.92126 0.83916 1.55206 1.90781 1.18090 1.22865 1.00879 0.73850 0.72579 0.71285 1.93567 1.87682 1.51237 1.64951 1.93573 1.57826 1.59290 1.85139 1.30648 1.20569 1.06484 1.16655 1.21503 1.00473 0.91466 0.91925 1.21664 0.90471 1.02424 0.97360 1.21918 1.02580 0.91262 0.95338 1.17976 0.83203 0.91409 1.03522 1.91515 1.53204 1.78204 1.89376 1.20976 0.90877 1.01297 0.95846 0.96471 0.93447 0.93026 0.92692 0.75282 0.84603 0.85037 0.73641 0.81085 0.79980 0.81238 0.83397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.22 9.36 71.98 0.67 -5.55 16 2 C 0.27 13.00 2.42 44.24 0.11 13.11 16 3 H 0.00 0.25 7.52 -2.39 -0.02 0.24 16 4 C -0.55 -27.19 8.66 25.60 0.22 -26.97 16 5 H 0.08 3.59 7.74 -2.91 -0.02 3.57 16 6 C 0.01 0.76 5.17 84.65 0.44 1.20 16 7 N -0.92 -52.15 12.16 21.45 0.26 -51.89 16 8 Si 0.97 40.35 29.55 68.60 2.03 42.37 16 9 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 10 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 12 N -0.70 -25.35 5.07 -446.08 -2.26 -27.61 16 13 C 0.49 17.07 7.86 87.66 0.69 17.76 16 14 O -0.59 -26.35 15.39 -3.04 -0.05 -26.39 16 15 C 0.10 2.12 6.70 85.63 0.57 2.70 16 16 N -1.11 -25.37 5.93 -190.80 -1.13 -26.50 16 17 S 2.72 58.81 5.74 -56.49 -0.32 58.48 16 18 O -0.98 -27.58 17.28 -128.00 -2.21 -29.79 16 19 O -0.97 -23.75 16.75 -128.00 -2.14 -25.90 16 20 C -0.66 -11.16 5.95 22.26 0.13 -11.02 16 21 C -0.03 -0.40 9.52 22.27 0.21 -0.19 16 22 C -0.10 -0.82 10.04 22.26 0.22 -0.60 16 23 C -0.09 -0.99 10.03 22.31 0.22 -0.77 16 24 C 0.06 1.00 7.30 22.38 0.16 1.16 16 25 F -0.14 -2.80 17.27 44.97 0.78 -2.02 16 26 C -0.07 -1.30 9.50 22.32 0.21 -1.09 16 27 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 2.48 6.83 -2.38 -0.02 2.46 16 29 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 31 H 0.41 11.48 8.53 -92.71 -0.79 10.69 16 32 H 0.14 2.14 7.75 -2.39 -0.02 2.12 16 33 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.43 11.10 7.70 -96.74 -0.75 10.35 16 35 H 0.17 1.27 7.61 -2.91 -0.02 1.25 16 36 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 37 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 38 H 0.15 2.76 7.62 -2.91 -0.02 2.74 16 Total: -1.00 -76.73 349.12 -1.59 -78.33 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -0.41 Total: 21.18 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 3.87 Total: -10.25 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -3.13 Total: -106.00 kcal Atomic # 8 Polarization: -77.68 SS G_CDS: -4.40 Total: -82.08 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.78 Total: -2.02 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.37 kcal Atomic # 16 Polarization: 58.81 SS G_CDS: -0.32 Total: 58.48 kcal Total: -76.73 -1.59 -78.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353781482.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.327 kcal (2) G-P(sol) polarization free energy of solvation -76.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds