Wall clock time and date at job start Tue Mar 31 2020 06:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08005 * 120.00291 * 114.36412 * 4 2 1 6 6 C 1.37881 * 120.00259 * 294.36743 * 4 2 1 7 7 N 1.31514 * 120.00212 * 156.61898 * 6 4 2 8 8 Si 1.86795 * 119.99775 * 336.88788 * 6 4 2 9 9 H 1.48501 * 109.47165 * 179.72704 * 8 6 4 10 10 H 1.48500 * 109.47318 * 299.72681 * 8 6 4 11 11 H 1.48500 * 109.47076 * 59.72783 * 8 6 4 12 12 N 1.46498 * 109.46908 * 240.00405 * 2 1 3 13 13 C 1.34776 * 119.99973 * 85.00105 * 12 2 1 14 14 O 1.21275 * 120.00093 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99964 * 179.97438 * 13 12 2 16 16 N 1.46500 * 109.47415 * 180.02562 * 15 13 12 17 17 S 1.65598 * 120.00153 * 165.00192 * 16 15 13 18 18 O 1.42109 * 106.40046 * 178.53753 * 17 16 15 19 19 O 1.42103 * 106.39990 * 311.45194 * 17 16 15 20 20 C 1.76199 * 107.21873 * 64.99724 * 17 16 15 21 21 C 1.38267 * 119.98372 * 269.72271 * 20 17 16 22 22 C 1.38225 * 120.04718 * 179.72696 * 21 20 17 23 23 C 1.38214 * 120.02659 * 0.55133 * 22 21 20 24 24 C 1.38439 * 119.97520 * 359.72190 * 23 22 21 25 25 F 1.35103 * 120.02642 * 180.02562 * 24 23 22 26 26 C 1.38174 * 119.98864 * 90.00245 * 20 17 16 27 27 H 1.09007 * 109.46955 * 53.09808 * 1 2 3 28 28 H 1.08994 * 109.47507 * 173.10064 * 1 2 3 29 29 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 30 30 H 0.97003 * 119.99433 * 355.20223 * 7 6 4 31 31 H 0.96999 * 119.99673 * 264.99382 * 12 2 1 32 32 H 1.09007 * 109.46983 * 299.99861 * 15 13 12 33 33 H 1.08994 * 109.47412 * 59.99878 * 15 13 12 34 34 H 0.96998 * 119.99590 * 344.99370 * 16 15 13 35 35 H 1.08001 * 119.97550 * 359.97438 * 21 20 17 36 36 H 1.08002 * 119.98353 * 180.27521 * 22 21 20 37 37 H 1.08006 * 120.01300 * 179.74779 * 23 22 21 38 38 H 1.08003 * 120.01316 * 359.97310 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7976 -0.1756 2.4794 7 7 1.8026 -0.9539 3.5395 8 14 1.4651 1.6531 2.6649 9 1 1.2392 1.9724 4.0975 10 1 2.6331 2.4218 2.1647 11 1 0.2588 2.0190 1.8800 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8590 1.1587 -2.4114 15 6 2.6498 -0.7283 -3.5875 16 7 2.6996 0.2132 -4.7088 17 16 3.5499 -0.1723 -6.0766 18 8 3.3769 0.9142 -6.9761 19 8 4.8245 -0.6261 -5.6421 20 6 2.7520 -1.5599 -6.8130 21 6 3.1366 -2.8421 -6.4669 22 6 2.5077 -3.9317 -7.0396 23 6 1.5013 -3.7405 -7.9675 24 6 1.1193 -2.4571 -8.3190 25 9 0.1353 -2.2691 -9.2255 26 6 1.7462 -1.3663 -7.7404 27 1 -0.3633 0.6171 -0.8218 28 1 -0.3634 -1.0201 -0.1234 29 1 -0.3633 0.4033 0.9453 30 1 1.9020 -1.9133 3.4363 31 1 2.2490 -1.6317 -1.1527 32 1 3.6492 -1.1201 -3.3980 33 1 1.9777 -1.5505 -3.8327 34 1 2.2344 1.0623 -4.6501 35 1 3.9262 -2.9925 -5.7456 36 1 2.8059 -4.9328 -6.7652 37 1 1.0128 -4.5920 -8.4179 38 1 1.4487 -0.3646 -8.0137 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353781483.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:42 Heat of formation + Delta-G solvation = -129.603324 kcal Electronic energy + Delta-G solvation = -25466.224775 eV Core-core repulsion = 21350.350438 eV Total energy + Delta-G solvation = -4115.874336 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.38732 -39.46730 -39.34832 -37.52336 -36.13745 -35.48472 -34.50461 -32.57946 -31.98336 -31.09186 -30.06014 -26.84971 -24.88633 -24.11692 -23.32821 -21.25139 -20.05558 -19.74036 -18.85317 -18.30098 -17.55103 -17.10763 -16.81479 -16.49490 -16.23992 -16.09844 -15.91687 -15.46933 -15.07760 -14.57286 -14.42426 -13.80090 -13.64567 -13.26462 -13.14116 -12.95923 -12.83170 -12.74311 -12.44269 -12.37756 -12.31862 -12.18562 -12.15763 -11.69598 -11.43956 -11.22915 -10.55746 -10.19958 -10.06985 -9.91640 -9.89370 -9.45503 -9.38328 -9.22547 -8.37293 -8.33771 -6.66393 -4.28018 -0.06691 0.22296 0.55885 2.54377 2.87279 2.97846 3.36155 3.42426 3.43704 3.56742 3.61774 3.75018 3.98127 4.29383 4.30897 4.38936 4.46936 4.71855 4.80446 4.93937 5.05008 5.11082 5.18748 5.30422 5.38670 5.46694 5.54200 5.58692 6.20443 6.30159 6.45107 6.58362 6.77114 6.87756 7.16801 7.26238 7.55978 8.17454 8.29904 8.58097 8.79320 9.38125 10.72266 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.018934 B = 0.002795 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.458148 B =10015.751039 C =10433.997215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.243 3.757 3 H 0.042 0.958 4 C -0.628 4.628 5 H 0.064 0.936 6 C 0.047 3.953 7 N -0.888 5.888 8 Si 1.033 2.967 9 H -0.282 1.282 10 H -0.280 1.280 11 H -0.274 1.274 12 N -0.697 5.697 13 C 0.501 3.499 14 O -0.548 6.548 15 C 0.093 3.907 16 N -1.100 6.100 17 S 2.702 3.298 18 O -0.951 6.951 19 O -0.948 6.948 20 C -0.652 4.652 21 C -0.032 4.032 22 C -0.109 4.109 23 C -0.099 4.099 24 C 0.079 3.921 25 F -0.134 7.134 26 C -0.052 4.052 27 H 0.029 0.971 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.271 0.729 31 H 0.396 0.604 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.430 0.570 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.035 -7.233 -22.632 23.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.140 3.860 3 H 0.060 0.940 4 C -0.665 4.665 5 H 0.082 0.918 6 C -0.161 4.161 7 N -0.520 5.520 8 Si 0.860 3.140 9 H -0.208 1.208 10 H -0.206 1.206 11 H -0.200 1.200 12 N -0.345 5.345 13 C 0.284 3.716 14 O -0.426 6.426 15 C -0.037 4.037 16 N -0.864 5.864 17 S 2.789 3.211 18 O -0.941 6.941 19 O -0.938 6.938 20 C -0.737 4.737 21 C -0.052 4.052 22 C -0.128 4.128 23 C -0.118 4.118 24 C 0.059 3.941 25 F -0.112 7.112 26 C -0.072 4.072 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.229 0.771 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.270 0.730 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.334 -4.965 -21.845 22.405 hybrid contribution -0.617 -2.069 -1.359 2.551 sum -0.282 -7.034 -23.204 24.248 Atomic orbital electron populations 1.22430 0.98767 0.99990 1.00286 1.19042 0.90593 0.94240 0.82151 0.93989 1.21996 1.42286 1.11295 0.90920 0.91820 1.25637 0.92902 1.05900 0.91708 1.70875 1.42747 1.06485 1.31883 0.84184 0.77777 0.75668 0.76356 1.20806 1.20587 1.19987 1.46260 1.64579 1.13901 1.09734 1.20209 0.78962 0.87699 0.84744 1.90651 1.51461 1.15832 1.84701 1.21173 1.03825 0.92009 0.86700 1.55192 1.72455 1.29561 1.29210 1.01800 0.73562 0.73262 0.72450 1.93617 1.86186 1.51275 1.63035 1.93614 1.36580 1.82420 1.81193 1.31086 1.12537 1.17569 1.12549 1.21117 0.96796 0.90553 0.96694 1.21229 0.95464 1.00006 0.96126 1.21532 0.97151 0.95989 0.97158 1.17728 0.89867 0.94328 0.92154 1.91547 1.59184 1.96060 1.64438 1.20916 0.92932 0.99844 0.93484 0.95185 0.93735 0.92150 0.91882 0.77088 0.87310 0.89009 0.73035 0.83123 0.83677 0.83808 0.82801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 9.20 37.16 0.34 -3.01 16 2 C 0.24 5.52 2.16 -69.09 -0.15 5.38 16 3 H 0.04 1.05 6.15 -51.93 -0.32 0.73 16 4 C -0.63 -16.22 8.95 -34.44 -0.31 -16.53 16 5 H 0.06 1.71 7.96 -52.48 -0.42 1.29 16 6 C 0.05 1.27 5.19 -17.82 -0.09 1.17 16 7 N -0.89 -25.57 13.70 55.43 0.76 -24.81 16 8 Si 1.03 24.33 26.44 -169.99 -4.50 19.84 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.08 6.14 56.52 0.35 -5.73 16 12 N -0.70 -12.67 5.07 -54.94 -0.28 -12.94 16 13 C 0.50 8.42 7.86 -10.98 -0.09 8.34 16 14 O -0.55 -11.14 15.39 5.56 0.09 -11.05 16 15 C 0.09 1.06 6.70 -5.19 -0.03 1.02 16 16 N -1.10 -12.50 5.93 -11.65 -0.07 -12.56 16 17 S 2.70 29.53 5.74 -107.50 -0.62 28.92 16 18 O -0.95 -12.73 17.28 -57.17 -0.99 -13.72 16 19 O -0.95 -12.34 16.74 -57.17 -0.96 -13.30 16 20 C -0.65 -5.91 5.95 -39.59 -0.24 -6.15 16 21 C -0.03 -0.24 9.52 -39.58 -0.38 -0.62 16 22 C -0.11 -0.66 10.04 -39.59 -0.40 -1.06 16 23 C -0.10 -0.67 10.03 -39.52 -0.40 -1.06 16 24 C 0.08 0.69 7.30 -39.42 -0.29 0.41 16 25 F -0.13 -1.28 17.27 2.25 0.04 -1.24 16 26 C -0.05 -0.48 9.50 -39.52 -0.38 -0.85 16 27 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 1.35 5.47 -51.93 -0.28 1.06 16 30 H 0.27 7.68 8.73 -40.82 -0.36 7.33 16 31 H 0.40 6.10 8.53 -40.82 -0.35 5.75 16 32 H 0.11 1.06 7.75 -51.92 -0.40 0.65 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.43 5.17 7.70 -34.47 -0.27 4.91 16 35 H 0.15 0.89 7.61 -52.49 -0.40 0.49 16 36 H 0.15 0.47 8.06 -52.49 -0.42 0.05 16 37 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 38 H 0.15 1.29 7.62 -52.48 -0.40 0.89 16 LS Contribution 344.39 15.07 5.19 5.19 Total: -1.00 -34.51 344.39 -7.89 -42.40 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -4.16 Total: 6.26 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -2.40 Total: -12.97 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.41 Total: -50.32 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -1.86 Total: -38.08 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -4.50 Total: 19.84 kcal Atomic # 16 Polarization: 29.53 SS G_CDS: -0.62 Total: 28.92 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.51 -7.89 -42.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353781483.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.204 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds