Wall clock time and date at job start Tue Mar 31 2020 06:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08005 * 120.00291 * 114.36412 * 4 2 1 6 6 C 1.37881 * 120.00259 * 294.36743 * 4 2 1 7 7 N 1.31514 * 120.00212 * 156.61898 * 6 4 2 8 8 Si 1.86795 * 119.99775 * 336.88788 * 6 4 2 9 9 H 1.48501 * 109.47165 * 179.72704 * 8 6 4 10 10 H 1.48500 * 109.47318 * 299.72681 * 8 6 4 11 11 H 1.48500 * 109.47076 * 59.72783 * 8 6 4 12 12 N 1.46498 * 109.46908 * 240.00405 * 2 1 3 13 13 C 1.34776 * 119.99973 * 85.00105 * 12 2 1 14 14 O 1.21275 * 120.00093 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99964 * 179.97438 * 13 12 2 16 16 N 1.46500 * 109.47415 * 180.02562 * 15 13 12 17 17 S 1.65598 * 120.00153 * 165.00192 * 16 15 13 18 18 O 1.42109 * 106.40046 * 178.53753 * 17 16 15 19 19 O 1.42103 * 106.39990 * 311.45194 * 17 16 15 20 20 C 1.76199 * 107.21873 * 64.99724 * 17 16 15 21 21 C 1.38267 * 119.98372 * 269.72271 * 20 17 16 22 22 C 1.38225 * 120.04718 * 179.72696 * 21 20 17 23 23 C 1.38214 * 120.02659 * 0.55133 * 22 21 20 24 24 C 1.38439 * 119.97520 * 359.72190 * 23 22 21 25 25 F 1.35103 * 120.02642 * 180.02562 * 24 23 22 26 26 C 1.38174 * 119.98864 * 90.00245 * 20 17 16 27 27 H 1.09007 * 109.46955 * 53.09808 * 1 2 3 28 28 H 1.08994 * 109.47507 * 173.10064 * 1 2 3 29 29 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 30 30 H 0.97003 * 119.99433 * 355.20223 * 7 6 4 31 31 H 0.96999 * 119.99673 * 264.99382 * 12 2 1 32 32 H 1.09007 * 109.46983 * 299.99861 * 15 13 12 33 33 H 1.08994 * 109.47412 * 59.99878 * 15 13 12 34 34 H 0.96998 * 119.99590 * 344.99370 * 16 15 13 35 35 H 1.08001 * 119.97550 * 359.97438 * 21 20 17 36 36 H 1.08002 * 119.98353 * 180.27521 * 22 21 20 37 37 H 1.08006 * 120.01300 * 179.74779 * 23 22 21 38 38 H 1.08003 * 120.01316 * 359.97310 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7976 -0.1756 2.4794 7 7 1.8026 -0.9539 3.5395 8 14 1.4651 1.6531 2.6649 9 1 1.2392 1.9724 4.0975 10 1 2.6331 2.4218 2.1647 11 1 0.2588 2.0190 1.8800 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8590 1.1587 -2.4114 15 6 2.6498 -0.7283 -3.5875 16 7 2.6996 0.2132 -4.7088 17 16 3.5499 -0.1723 -6.0766 18 8 3.3769 0.9142 -6.9761 19 8 4.8245 -0.6261 -5.6421 20 6 2.7520 -1.5599 -6.8130 21 6 3.1366 -2.8421 -6.4669 22 6 2.5077 -3.9317 -7.0396 23 6 1.5013 -3.7405 -7.9675 24 6 1.1193 -2.4571 -8.3190 25 9 0.1353 -2.2691 -9.2255 26 6 1.7462 -1.3663 -7.7404 27 1 -0.3633 0.6171 -0.8218 28 1 -0.3634 -1.0201 -0.1234 29 1 -0.3633 0.4033 0.9453 30 1 1.9020 -1.9133 3.4363 31 1 2.2490 -1.6317 -1.1527 32 1 3.6492 -1.1201 -3.3980 33 1 1.9777 -1.5505 -3.8327 34 1 2.2344 1.0623 -4.6501 35 1 3.9262 -2.9925 -5.7456 36 1 2.8059 -4.9328 -6.7652 37 1 1.0128 -4.5920 -8.4179 38 1 1.4487 -0.3646 -8.0137 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353781483.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:41 Heat of formation + Delta-G solvation = -157.305511 kcal Electronic energy + Delta-G solvation = -25467.426032 eV Core-core repulsion = 21350.350438 eV Total energy + Delta-G solvation = -4117.075593 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.04249 -40.75612 -40.01928 -38.47836 -37.09476 -37.01897 -35.66663 -34.48291 -32.55323 -31.73078 -31.66199 -27.97407 -26.82293 -24.72135 -23.90205 -22.86823 -21.33760 -20.82297 -19.94642 -19.53896 -18.86753 -17.92908 -17.49748 -17.32475 -17.28494 -16.99316 -16.75023 -16.70592 -16.20524 -15.85076 -15.30424 -14.97347 -14.60380 -14.56879 -14.43362 -14.38843 -14.01509 -13.71250 -13.51111 -13.42386 -13.35050 -13.30760 -13.23143 -13.16476 -12.86323 -12.42337 -12.00886 -11.91574 -11.74964 -11.20661 -10.99422 -10.69749 -10.58325 -10.43500 -9.98009 -9.92243 -8.78698 -6.40089 -0.85538 -0.43913 -0.01165 1.48346 1.51625 1.66377 1.71141 1.75367 2.23196 2.43826 2.47018 2.62320 2.97507 2.97969 3.31724 3.62596 3.68022 3.82271 3.94419 4.17287 4.23525 4.32436 4.40233 4.49372 4.58239 4.74754 4.76733 4.81248 4.84788 5.00171 5.08311 5.11585 5.46247 5.61962 5.66516 5.68559 5.84734 6.05078 6.55839 6.80642 7.28003 7.39205 8.59413 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.018934 B = 0.002795 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.458148 B =10015.751039 C =10433.997215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.244 3.756 3 H 0.022 0.978 4 C -0.621 4.621 5 H 0.047 0.953 6 C 0.003 3.997 7 N -0.921 5.921 8 Si 1.064 2.936 9 H -0.283 1.283 10 H -0.275 1.275 11 H -0.254 1.254 12 N -0.698 5.698 13 C 0.499 3.501 14 O -0.585 6.585 15 C 0.098 3.902 16 N -1.105 6.105 17 S 2.722 3.278 18 O -0.982 6.982 19 O -0.970 6.970 20 C -0.655 4.655 21 C -0.036 4.036 22 C -0.101 4.101 23 C -0.092 4.092 24 C 0.060 3.940 25 F -0.143 7.143 26 C -0.068 4.068 27 H 0.039 0.961 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.262 0.738 31 H 0.410 0.590 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.427 0.573 35 H 0.169 0.831 36 H 0.181 0.819 37 H 0.170 0.830 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.134 -8.856 -24.111 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.139 3.861 3 H 0.040 0.960 4 C -0.659 4.659 5 H 0.066 0.934 6 C -0.199 4.199 7 N -0.554 5.554 8 Si 0.887 3.113 9 H -0.209 1.209 10 H -0.201 1.201 11 H -0.178 1.178 12 N -0.347 5.347 13 C 0.284 3.716 14 O -0.466 6.466 15 C -0.031 4.031 16 N -0.868 5.868 17 S 2.812 3.188 18 O -0.972 6.972 19 O -0.960 6.960 20 C -0.743 4.743 21 C -0.055 4.055 22 C -0.120 4.120 23 C -0.110 4.110 24 C 0.040 3.960 25 F -0.122 7.122 26 C -0.088 4.088 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.246 0.754 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.266 0.734 35 H 0.186 0.814 36 H 0.199 0.801 37 H 0.188 0.812 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.190 -6.590 -23.340 24.253 hybrid contribution -0.535 -1.678 -0.985 2.018 sum -0.345 -8.268 -24.325 25.694 Atomic orbital electron populations 1.22300 0.97578 1.00835 1.00032 1.18727 0.91413 0.93116 0.82830 0.95983 1.22185 1.40968 1.10516 0.92212 0.93447 1.26646 0.92794 1.08505 0.91958 1.70963 1.45548 1.06137 1.32801 0.83767 0.78708 0.72294 0.76544 1.20898 1.20075 1.17829 1.46037 1.65006 1.14579 1.09104 1.21022 0.77705 0.87324 0.85521 1.90637 1.52847 1.17726 1.85412 1.21322 1.05804 0.92111 0.83860 1.55179 1.72450 1.29709 1.29467 1.00928 0.73000 0.73062 0.71779 1.93573 1.86595 1.53280 1.63775 1.93579 1.38137 1.82772 1.81551 1.30629 1.13126 1.17271 1.13290 1.21484 0.97025 0.90123 0.96877 1.21649 0.94291 1.01171 0.94867 1.21914 0.96790 0.95783 0.96557 1.17961 0.90197 0.95204 0.92614 1.91521 1.59637 1.96196 1.64860 1.20976 0.93525 1.00190 0.94135 0.94200 0.92624 0.93325 0.92845 0.75422 0.85125 0.84776 0.73440 0.81354 0.80141 0.81226 0.83195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.15 9.20 71.98 0.66 -5.49 16 2 C 0.24 10.85 2.16 44.24 0.10 10.95 16 3 H 0.02 1.09 6.15 -2.38 -0.01 1.07 16 4 C -0.62 -31.97 8.95 25.60 0.23 -31.74 16 5 H 0.05 2.54 7.96 -2.91 -0.02 2.52 16 6 C 0.00 0.19 5.19 84.66 0.44 0.63 16 7 N -0.92 -53.61 13.70 21.45 0.29 -53.31 16 8 Si 1.06 48.87 26.44 68.60 1.81 50.68 16 9 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.25 -10.74 6.14 99.48 0.61 -10.13 16 12 N -0.70 -24.15 5.07 -446.11 -2.26 -26.42 16 13 C 0.50 15.86 7.86 87.66 0.69 16.55 16 14 O -0.59 -23.29 15.39 -3.02 -0.05 -23.34 16 15 C 0.10 1.95 6.70 85.63 0.57 2.53 16 16 N -1.10 -23.47 5.93 -190.79 -1.13 -24.61 16 17 S 2.72 56.54 5.74 -56.49 -0.32 56.22 16 18 O -0.98 -26.38 17.28 -128.00 -2.21 -28.59 16 19 O -0.97 -23.80 16.74 -128.00 -2.14 -25.95 16 20 C -0.65 -10.60 5.95 22.26 0.13 -10.46 16 21 C -0.04 -0.41 9.52 22.27 0.21 -0.20 16 22 C -0.10 -0.79 10.04 22.26 0.22 -0.57 16 23 C -0.09 -0.91 10.03 22.31 0.22 -0.69 16 24 C 0.06 0.95 7.30 22.38 0.16 1.11 16 25 F -0.14 -2.60 17.27 44.97 0.78 -1.83 16 26 C -0.07 -1.18 9.50 22.31 0.21 -0.97 16 27 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.05 2.10 5.47 -2.39 -0.01 2.08 16 30 H 0.26 15.17 8.73 -92.71 -0.81 14.36 16 31 H 0.41 11.73 8.53 -92.71 -0.79 10.94 16 32 H 0.13 2.09 7.75 -2.38 -0.02 2.07 16 33 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.43 10.02 7.70 -96.75 -0.75 9.28 16 35 H 0.17 1.30 7.61 -2.91 -0.02 1.28 16 36 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 37 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 38 H 0.15 2.56 7.62 -2.91 -0.02 2.54 16 Total: -1.00 -75.37 344.39 -1.92 -77.28 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -0.54 Total: 18.20 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 3.86 Total: -18.35 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -3.10 Total: -104.34 kcal Atomic # 8 Polarization: -73.47 SS G_CDS: -4.40 Total: -77.87 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.78 Total: -1.83 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 1.81 Total: 50.68 kcal Atomic # 16 Polarization: 56.54 SS G_CDS: -0.32 Total: 56.22 kcal Total: -75.37 -1.92 -77.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353781483.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.024 kcal (2) G-P(sol) polarization free energy of solvation -75.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds