Wall clock time and date at job start Tue Mar 31 2020 05:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86804 * 119.99987 * 2 1 4 4 H 1.48505 * 109.47131 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47251 * 300.00349 * 3 2 1 6 6 H 1.48501 * 109.47015 * 60.00229 * 3 2 1 7 7 C 1.38949 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00371 * 179.97438 * 7 2 1 9 9 N 1.37094 * 119.99695 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99929 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00154 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00202 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47242 * 179.97438 * 12 10 9 14 14 C 1.34776 * 119.99761 * 179.97438 * 13 12 10 15 15 O 1.21277 * 120.00094 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99676 * 179.97438 * 14 13 12 17 17 O 1.42902 * 109.46778 * 180.02562 * 16 14 13 18 18 C 1.35927 * 116.99819 * 180.02562 * 17 16 14 19 19 C 1.38750 * 120.02853 * 0.02562 * 18 17 16 20 20 C 1.38149 * 120.00414 * 179.97438 * 19 18 17 21 21 C 1.38335 * 120.06508 * 359.97438 * 20 19 18 22 22 Cl 1.73598 * 119.96997 * 180.27816 * 21 20 19 23 23 C 1.38575 * 120.06199 * 0.02562 * 21 20 19 24 24 F 1.35104 * 120.00103 * 180.02562 * 23 21 20 25 25 C 1.38368 * 119.99313 * 359.97438 * 23 21 20 26 26 H 0.97001 * 119.99988 * 359.97438 * 1 2 3 27 27 H 0.97004 * 120.00274 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47188 * 59.99704 * 12 10 9 29 29 H 1.09006 * 109.46861 * 299.99962 * 12 10 9 30 30 H 0.96993 * 120.00065 * 0.02562 * 13 12 10 31 31 H 1.09002 * 109.47049 * 60.00468 * 16 14 13 32 32 H 1.08992 * 109.47388 * 300.00330 * 16 14 13 33 33 H 1.08001 * 119.99924 * 0.02562 * 19 18 17 34 34 H 1.07994 * 119.96576 * 179.97438 * 20 19 18 35 35 H 1.08002 * 120.02732 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1957 -5.9764 -0.0016 14 6 1.7465 -7.2471 -0.0017 15 8 0.5541 -7.4687 -0.0018 16 6 2.7258 -8.3925 -0.0028 17 8 2.0112 -9.6301 -0.0032 18 6 2.7515 -10.7700 -0.0036 19 6 4.1371 -10.6981 -0.0031 20 6 4.8891 -11.8571 -0.0031 21 6 4.2619 -13.0901 -0.0030 22 17 5.2091 -14.5448 0.0044 23 6 2.8782 -13.1651 -0.0035 24 9 2.2669 -14.3699 -0.0029 25 6 2.1226 -12.0059 -0.0035 26 1 -0.4850 0.8401 0.0004 27 1 0.3533 -2.3906 0.0002 28 1 0.6174 -4.9205 -0.8913 29 1 0.6167 -4.9208 0.8887 30 1 3.1494 -5.7992 -0.0012 31 1 3.3531 -8.3351 0.8868 32 1 3.3518 -8.3345 -0.8931 33 1 4.6279 -9.7361 -0.0020 34 1 5.9675 -11.8004 -0.0031 35 1 1.0442 -12.0637 -0.0044 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354420299.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:20 Heat of formation + Delta-G solvation = -133.258826 kcal Electronic energy + Delta-G solvation = -23709.898800 eV Core-core repulsion = 19455.989149 eV Total energy + Delta-G solvation = -4253.909652 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.061 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.41048 -40.83256 -39.58974 -38.33531 -37.75152 -36.62537 -34.60989 -33.82858 -31.68402 -31.46871 -30.41182 -29.31455 -27.02967 -24.55457 -23.68818 -22.81454 -20.56892 -19.73749 -19.15370 -18.30199 -17.75657 -17.10394 -17.04972 -16.82253 -16.35866 -16.13135 -15.80190 -15.32857 -15.13081 -14.79267 -14.47926 -14.36342 -13.95872 -13.89620 -13.53472 -13.29659 -13.29552 -12.77288 -12.39242 -12.32300 -11.95145 -11.93898 -11.70494 -11.33427 -11.20450 -11.10246 -10.46997 -10.39629 -9.95694 -9.72753 -9.50563 -9.03557 -8.74593 -8.71528 -8.18730 -6.59093 -4.01509 0.47878 0.57752 1.60691 2.15996 2.49512 2.90805 3.04729 3.17812 3.23487 3.33919 3.63942 3.71966 4.03761 4.10846 4.30565 4.47695 4.62860 4.69557 4.69762 4.75523 4.76895 5.09338 5.15300 5.33800 5.47533 5.62336 5.76250 5.82407 5.94705 5.95182 6.42458 6.71985 7.38980 7.52524 7.83288 8.16093 8.35862 8.96542 9.30180 9.77192 10.57582 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.040877 B = 0.001667 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.811575 B =16794.808593 C =17459.170300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.307 4.307 8 H 0.107 0.893 9 N -0.546 5.546 10 C 0.426 3.574 11 O -0.599 6.599 12 C 0.111 3.889 13 N -0.701 5.701 14 C 0.514 3.486 15 O -0.524 6.524 16 C 0.039 3.961 17 O -0.279 6.279 18 C 0.171 3.829 19 C -0.210 4.210 20 C -0.038 4.038 21 C -0.116 4.116 22 Cl -0.053 7.053 23 C 0.152 3.848 24 F -0.121 7.121 25 C -0.177 4.177 26 H 0.275 0.725 27 H 0.396 0.604 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.413 0.587 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.583 -23.248 -0.001 24.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.436 4.436 8 H 0.125 0.875 9 N -0.181 5.181 10 C 0.212 3.788 11 O -0.486 6.486 12 C -0.017 4.017 13 N -0.357 5.357 14 C 0.297 3.703 15 O -0.400 6.400 16 C -0.039 4.039 17 O -0.190 6.190 18 C 0.124 3.876 19 C -0.229 4.229 20 C -0.057 4.057 21 C -0.144 4.144 22 Cl -0.024 7.024 23 C 0.132 3.868 24 F -0.099 7.099 25 C -0.196 4.196 26 H 0.085 0.915 27 H 0.230 0.770 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.251 0.749 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.165 0.835 34 H 0.166 0.834 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.214 -23.349 -0.002 24.438 hybrid contribution 0.381 0.721 0.001 0.815 sum 7.595 -22.628 0.000 23.869 Atomic orbital electron populations 1.69615 1.06045 1.28565 1.49000 1.25346 0.95679 1.00022 0.96635 0.85746 0.79668 0.80716 0.77888 1.19104 1.20566 1.20561 1.19784 0.93513 0.81919 1.48374 0.87542 1.41803 1.09543 1.04488 1.62243 1.19671 0.88272 0.84920 0.85984 1.90496 1.13649 1.86775 1.57644 1.21000 0.91662 0.85403 1.03603 1.45490 1.11962 1.04052 1.74208 1.19788 0.89219 0.83448 0.77826 1.90762 1.16234 1.84467 1.48522 1.22599 0.94648 0.82058 1.04608 1.86194 1.33912 1.11490 1.87413 1.18700 0.89682 0.86321 0.92943 1.21367 0.92394 1.00093 1.09047 1.20749 1.00935 0.89014 0.94988 1.20834 0.90142 0.89791 1.13590 1.98385 1.71514 1.35301 1.97194 1.16924 0.88481 0.80901 1.00501 1.91569 1.83077 1.41878 1.93357 1.20229 1.01922 0.88158 1.09305 0.91536 0.76978 0.89525 0.89523 0.74911 0.88204 0.88205 0.83453 0.83414 0.82619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.15 13.05 55.50 0.72 -22.43 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 19.90 29.55 -169.99 -5.02 14.88 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.31 -8.03 9.68 -14.94 -0.14 -8.18 16 8 H 0.11 2.91 7.16 -52.49 -0.38 2.53 16 9 N -0.55 -12.93 5.29 -10.96 -0.06 -12.99 16 10 C 0.43 9.14 7.85 -10.98 -0.09 9.06 16 11 O -0.60 -14.34 15.24 5.55 0.08 -14.26 16 12 C 0.11 1.86 6.15 -5.19 -0.03 1.83 16 13 N -0.70 -10.06 5.53 -61.47 -0.34 -10.40 16 14 C 0.51 7.06 7.91 -10.99 -0.09 6.97 16 15 O -0.52 -9.34 16.50 -14.35 -0.24 -9.58 16 16 C 0.04 0.36 5.22 36.01 0.19 0.55 16 17 O -0.28 -3.13 9.67 -39.42 -0.38 -3.51 16 18 C 0.17 1.57 6.68 -39.23 -0.26 1.31 16 19 C -0.21 -1.46 9.04 -39.43 -0.36 -1.82 16 20 C -0.04 -0.26 9.82 -39.58 -0.39 -0.65 16 21 C -0.12 -0.98 6.33 -39.42 -0.25 -1.23 16 22 Cl -0.05 -0.44 28.61 -51.86 -1.48 -1.92 16 23 C 0.15 1.42 7.27 -39.41 -0.29 1.13 16 24 F -0.12 -1.21 16.83 2.25 0.04 -1.17 16 25 C -0.18 -1.63 9.96 -39.38 -0.39 -2.03 16 26 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 27 H 0.40 9.03 7.90 -40.82 -0.32 8.71 16 28 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.41 5.53 7.44 -40.82 -0.30 5.22 16 31 H 0.10 0.65 7.66 -51.93 -0.40 0.25 16 32 H 0.10 0.65 7.66 -51.93 -0.40 0.25 16 33 H 0.15 0.67 6.30 -52.49 -0.33 0.34 16 34 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 337.82 15.07 5.09 5.09 Total: -1.00 -31.49 337.82 -6.73 -38.23 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -2.95 Total: 10.54 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -2.19 Total: 7.53 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.33 Total: -45.82 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.53 Total: -27.34 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.48 Total: -1.92 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.49 -6.73 -38.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354420299.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.033 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds