Wall clock time and date at job start Tue Mar 31 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99969 * 2 1 4 4 H 1.48493 * 109.47353 * 270.00213 * 3 2 1 5 5 H 1.48502 * 109.46726 * 30.00351 * 3 2 1 6 6 H 1.48495 * 109.47028 * 149.99723 * 3 2 1 7 7 C 1.37876 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99930 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00113 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47217 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47213 * 179.97438 * 10 9 7 12 12 C 1.34781 * 119.99650 * 179.97438 * 11 10 9 13 13 O 1.21277 * 120.00315 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.99654 * 180.02562 * 12 11 10 15 15 N 1.46502 * 109.46987 * 179.97438 * 14 12 11 16 16 S 1.65601 * 119.99902 * 164.99646 * 15 14 12 17 17 O 1.42107 * 106.40351 * 311.46098 * 16 15 14 18 18 O 1.42095 * 106.40404 * 178.53967 * 16 15 14 19 19 C 1.76198 * 107.21872 * 64.99881 * 16 15 14 20 20 C 1.38271 * 119.99027 * 270.25597 * 19 16 15 21 21 C 1.38219 * 120.05279 * 180.25746 * 20 19 16 22 22 C 1.38227 * 120.02402 * 359.48356 * 21 20 19 23 23 C 1.38435 * 119.97416 * 0.26250 * 22 21 20 24 24 F 1.35097 * 120.02437 * 179.97438 * 23 22 21 25 25 C 1.38179 * 119.98426 * 90.00066 * 19 16 15 26 26 H 0.96997 * 120.00229 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47335 * 59.99823 * 9 7 2 28 28 H 1.09006 * 109.46662 * 299.99592 * 9 7 2 29 29 H 1.08997 * 109.47333 * 59.98819 * 10 9 7 30 30 H 1.09006 * 109.46823 * 299.99311 * 10 9 7 31 31 H 0.96992 * 119.99964 * 0.02562 * 11 10 9 32 32 H 1.09000 * 109.47428 * 59.99376 * 14 12 11 33 33 H 1.09000 * 109.47035 * 299.99849 * 14 12 11 34 34 H 0.96997 * 120.00291 * 344.99695 * 15 14 12 35 35 H 1.08000 * 119.97479 * 0.02562 * 20 19 16 36 36 H 1.08002 * 119.99072 * 179.76964 * 21 20 19 37 37 H 1.07999 * 120.01289 * 180.23490 * 22 21 20 38 38 H 1.07994 * 120.01414 * 0.02562 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5127 -4.9308 -0.0020 12 6 2.1867 -6.0980 -0.0024 13 8 3.3995 -6.0980 -0.0028 14 6 1.4332 -7.4031 -0.0035 15 7 2.3852 -8.5166 -0.0044 16 16 1.8704 -10.0465 0.3656 17 8 1.1073 -9.9354 1.5593 18 8 3.0058 -10.8922 0.2450 19 6 0.7467 -10.5388 -0.8992 20 6 -0.6030 -10.2687 -0.7680 21 6 -1.4863 -10.6591 -1.7569 22 6 -1.0197 -11.3105 -2.8832 23 6 0.3321 -11.5767 -3.0181 24 9 0.7891 -12.2138 -4.1183 25 6 1.2155 -11.1899 -2.0242 26 1 -0.4850 0.8400 0.0004 27 1 0.6247 -2.5563 -0.8919 28 1 0.6241 -2.5574 0.8881 29 1 2.8713 -3.6047 0.8889 30 1 2.8725 -3.6040 -0.8911 31 1 0.5428 -4.9308 -0.0028 32 1 0.8068 -7.4603 -0.8937 33 1 0.8062 -7.4614 0.8862 34 1 3.3171 -8.3578 -0.2216 35 1 -0.9679 -9.7558 0.1095 36 1 -2.5408 -10.4510 -1.6517 37 1 -1.7096 -11.6120 -3.6576 38 1 2.2702 -11.3974 -2.1281 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355596496.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:42 Heat of formation + Delta-G solvation = -135.959158 kcal Electronic energy + Delta-G solvation = -24795.559407 eV Core-core repulsion = 20679.409461 eV Total energy + Delta-G solvation = -4116.149946 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.41458 -39.57032 -39.47284 -37.59357 -36.20652 -35.40412 -34.63959 -32.94699 -32.01866 -31.12679 -30.04775 -27.28474 -24.50409 -24.15469 -23.35936 -21.17603 -20.50889 -20.05594 -18.90403 -18.13508 -17.20504 -16.87648 -16.67998 -16.59787 -16.30085 -16.11567 -15.99539 -15.53637 -15.26448 -14.60372 -14.51184 -14.27707 -13.94897 -13.81480 -13.26764 -13.16865 -12.87168 -12.69822 -12.49754 -12.42650 -12.39984 -12.27225 -12.23873 -11.29048 -11.28134 -11.09112 -10.70155 -10.42747 -10.13851 -10.05906 -9.91037 -9.58399 -9.41905 -9.30131 -8.68726 -8.45138 -6.15272 -4.18347 -0.12581 0.17287 0.52640 2.47266 2.72467 2.82250 3.25814 3.32184 3.35399 3.37027 3.46834 3.59328 3.93092 4.25288 4.26885 4.36467 4.42724 4.60467 4.70499 4.90491 4.96508 5.02533 5.22162 5.25148 5.34983 5.35993 5.46836 5.55666 6.17192 6.21438 6.24136 6.61263 6.66674 6.75020 7.42851 7.53034 7.79092 7.83316 8.19146 8.40572 8.87483 9.47010 10.96268 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.018294 B = 0.002255 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.165588 B =12413.815714 C =13054.554391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.716 5.716 12 C 0.505 3.495 13 O -0.542 6.542 14 C 0.093 3.907 15 N -1.101 6.101 16 S 2.703 3.297 17 O -0.948 6.948 18 O -0.950 6.950 19 C -0.653 4.653 20 C -0.033 4.033 21 C -0.109 4.109 22 C -0.099 4.099 23 C 0.080 3.920 24 F -0.133 7.133 25 C -0.052 4.052 26 H 0.263 0.737 27 H 0.023 0.977 28 H 0.024 0.976 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.401 0.599 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.431 0.569 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 -24.121 -4.452 25.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.367 5.367 12 C 0.288 3.712 13 O -0.419 6.419 14 C -0.037 4.037 15 N -0.865 5.865 16 S 2.790 3.210 17 O -0.938 6.938 18 O -0.940 6.940 19 C -0.738 4.738 20 C -0.052 4.052 21 C -0.128 4.128 22 C -0.118 4.118 23 C 0.060 3.940 24 F -0.112 7.112 25 C -0.072 4.072 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.234 0.766 32 H 0.113 0.887 33 H 0.129 0.871 34 H 0.270 0.730 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.366 -24.515 -3.742 25.180 hybrid contribution -0.135 0.980 -1.120 1.494 sum -4.501 -23.535 -4.862 24.450 Atomic orbital electron populations 1.69945 1.06096 1.26969 1.50252 1.24992 0.94901 0.99450 0.94904 0.86504 0.79852 0.82943 0.78215 1.20551 1.21138 1.19713 1.21036 0.93259 0.90350 1.51543 0.92232 1.19333 0.94183 0.91059 0.97941 1.21797 0.96129 0.81158 1.01054 1.46281 1.10751 1.06424 1.73211 1.20233 0.88353 0.85347 0.77266 1.90682 1.13740 1.87186 1.50325 1.21160 0.91868 0.86138 1.04506 1.55225 1.20095 1.22689 1.88536 1.01781 0.73350 0.72096 0.73747 1.93616 1.72560 1.85818 1.41784 1.93619 1.49148 1.64545 1.86707 1.31062 1.11462 1.14189 1.17107 1.21112 0.90935 0.94536 0.98605 1.21239 1.00911 0.97729 0.92891 1.21547 0.93941 0.97143 0.99136 1.17732 0.92909 0.98342 0.85048 1.91548 1.89482 1.79342 1.50829 1.20916 1.01035 0.94330 0.90921 0.92787 0.95883 0.95805 0.92271 0.92332 0.76552 0.88687 0.87071 0.73025 0.83116 0.83628 0.83774 0.82806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.36 13.29 55.43 0.74 -24.62 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.52 -14.00 9.11 -34.44 -0.31 -14.32 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.14 16 10 C 0.12 2.37 5.61 -4.04 -0.02 2.34 16 11 N -0.72 -10.78 5.56 -60.29 -0.33 -11.12 16 12 C 0.50 7.23 7.90 -10.98 -0.09 7.14 16 13 O -0.54 -9.78 15.73 5.56 0.09 -9.69 16 14 C 0.09 0.88 6.70 -5.19 -0.03 0.85 16 15 N -1.10 -10.84 5.93 -11.66 -0.07 -10.91 16 16 S 2.70 26.47 5.74 -107.50 -0.62 25.85 16 17 O -0.95 -11.22 16.76 -57.17 -0.96 -12.18 16 18 O -0.95 -11.81 17.28 -57.17 -0.99 -12.80 16 19 C -0.65 -5.34 5.94 -39.59 -0.24 -5.58 16 20 C -0.03 -0.22 9.52 -39.58 -0.38 -0.59 16 21 C -0.11 -0.59 10.04 -39.59 -0.40 -0.99 16 22 C -0.10 -0.61 10.03 -39.51 -0.40 -1.01 16 23 C 0.08 0.65 7.30 -39.42 -0.29 0.37 16 24 F -0.13 -1.22 17.27 2.25 0.04 -1.18 16 25 C -0.05 -0.44 9.50 -39.51 -0.38 -0.82 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.40 4.89 8.47 -40.82 -0.35 4.54 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.11 0.84 7.75 -51.93 -0.40 0.44 16 34 H 0.43 4.52 7.70 -34.47 -0.27 4.26 16 35 H 0.15 0.74 7.62 -52.49 -0.40 0.34 16 36 H 0.15 0.39 8.06 -52.49 -0.42 -0.03 16 37 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.15 1.18 7.62 -52.49 -0.40 0.78 16 LS Contribution 352.65 15.07 5.31 5.31 Total: -1.00 -35.20 352.65 -8.89 -44.09 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -4.31 Total: 2.32 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -2.77 Total: -10.93 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.33 Total: -46.65 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -1.86 Total: -34.67 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 26.47 SS G_CDS: -0.62 Total: 25.85 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.20 -8.89 -44.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355596496.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.869 kcal (2) G-P(sol) polarization free energy of solvation -35.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds