Wall clock time and date at job start Tue Mar 31 2020 04:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42908 * 113.99182 * 2 1 4 4 C 1.52999 * 109.46782 * 179.97438 * 3 2 1 5 5 O 1.42904 * 109.47438 * 64.99673 * 4 3 2 6 6 C 1.42894 * 114.00145 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.50143 * 329.93319 * 6 5 4 8 8 C 1.53044 * 109.49472 * 209.84034 * 6 5 4 9 9 C 1.53045 * 109.53676 * 178.68703 * 8 6 5 10 10 C 1.53187 * 109.31467 * 61.36073 * 9 8 6 11 11 N 1.46921 * 108.77861 * 305.36941 * 10 9 8 12 12 C 1.34781 * 120.63001 * 233.63237 * 11 10 9 13 13 O 1.21584 * 120.00002 * 174.74983 * 12 11 10 14 14 N 1.34776 * 119.99863 * 354.74277 * 12 11 10 15 15 C 1.46507 * 119.99829 * 184.98484 * 14 12 11 16 16 C 1.50701 * 109.46946 * 180.02562 * 15 14 12 17 17 O 1.21291 * 120.00069 * 359.97438 * 16 15 14 18 18 N 1.34772 * 119.99874 * 179.97438 * 16 15 14 19 19 C 1.37097 * 120.00110 * 179.97438 * 18 16 15 20 20 H 1.07995 * 119.99941 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99809 * 179.97438 * 19 18 16 22 22 N 1.31404 * 120.00293 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99639 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47261 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46932 * 120.00324 * 23 21 19 26 26 H 1.48499 * 109.47394 * 240.00609 * 23 21 19 27 27 C 1.46921 * 118.74119 * 53.60398 * 11 10 9 28 28 H 1.08994 * 109.47666 * 299.99568 * 1 2 3 29 29 H 1.08994 * 109.47138 * 60.00684 * 1 2 3 30 30 H 1.09006 * 109.46377 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47028 * 59.99748 * 3 2 1 32 32 H 1.08998 * 109.47097 * 299.99603 * 3 2 1 33 33 H 1.09001 * 109.47245 * 305.00335 * 4 3 2 34 34 H 1.09002 * 109.47376 * 184.99847 * 4 3 2 35 35 H 1.09004 * 109.45855 * 298.70141 * 8 6 5 36 36 H 1.08994 * 109.46187 * 58.66743 * 8 6 5 37 37 H 1.09008 * 109.49405 * 301.41313 * 9 8 6 38 38 H 1.08996 * 109.49890 * 181.31494 * 9 8 6 39 39 H 1.09002 * 109.58822 * 185.57981 * 10 9 8 40 40 H 1.09003 * 109.58782 * 65.15588 * 10 9 8 41 41 H 0.96993 * 120.00225 * 4.98296 * 14 12 11 42 42 H 1.08999 * 109.47047 * 300.00325 * 15 14 12 43 43 H 1.09006 * 109.46747 * 60.00018 * 15 14 12 44 44 H 0.97004 * 120.00002 * 0.02562 * 18 16 15 45 45 H 0.97003 * 120.00355 * 179.97438 * 22 21 19 46 46 H 1.08997 * 109.59170 * 186.60339 * 27 11 10 47 47 H 1.09007 * 109.58901 * 66.18120 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1849 0.0006 5 8 3.9659 0.5795 -1.2201 6 6 5.3822 0.4201 -1.3219 7 1 5.8787 1.2127 -0.7624 8 6 5.8000 0.4933 -2.7924 9 6 7.3204 0.3555 -2.9000 10 6 7.7463 -1.0067 -2.3436 11 7 7.2231 -1.1442 -0.9776 12 6 8.0457 -1.4500 0.0453 13 8 7.6196 -1.4673 1.1839 14 7 9.3407 -1.7367 -0.1940 15 6 10.2086 -2.1750 0.9020 16 6 11.5967 -2.4282 0.3730 17 8 11.8374 -2.2597 -0.8038 18 7 12.5708 -2.8420 1.2075 19 6 13.8336 -3.0729 0.7262 20 1 14.0479 -2.9228 -0.3216 21 6 14.8379 -3.4990 1.5867 22 7 14.5773 -3.6811 2.8617 23 14 16.5586 -3.8129 0.9310 24 1 16.5908 -3.5356 -0.5275 25 1 17.5230 -2.9222 1.6252 26 1 16.9301 -5.2300 1.1741 27 6 5.7862 -0.9415 -0.7477 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0278 -0.0005 31 1 1.6884 1.8465 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.8507 0.5688 0.8427 34 1 3.9783 2.1769 0.0902 35 1 5.3221 -0.3147 -3.3464 36 1 5.4918 1.4517 -3.2102 37 1 7.7991 1.1488 -2.3258 38 1 7.6195 0.4311 -3.9454 39 1 8.8343 -1.0704 -2.3263 40 1 7.3417 -1.8006 -2.9715 41 1 9.6982 -1.6528 -1.0917 42 1 10.2475 -1.3995 1.6670 43 1 9.8112 -3.0930 1.3351 44 1 12.3782 -2.9771 2.1486 45 1 15.2783 -3.9789 3.4624 46 1 5.5808 -0.9622 0.3225 47 1 5.2216 -1.7300 -1.2455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358270430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:46 Heat of formation + Delta-G solvation = -152.547869 kcal Electronic energy + Delta-G solvation = -28160.214968 eV Core-core repulsion = 23957.604873 eV Total energy + Delta-G solvation = -4202.610096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.45478 -39.00101 -38.29798 -37.80258 -36.42510 -34.48391 -33.71079 -32.65558 -31.37937 -31.15536 -29.59339 -27.61511 -26.58442 -25.38993 -24.22936 -23.40804 -22.59240 -21.17225 -19.67409 -19.47986 -18.41254 -17.88758 -17.17249 -17.00822 -16.21500 -16.05701 -15.73696 -15.58113 -15.43054 -15.07496 -14.73874 -14.55388 -14.38817 -14.12031 -14.05807 -13.75737 -13.46171 -13.23359 -13.11425 -12.81405 -12.57732 -12.23014 -11.96319 -11.91517 -11.79469 -11.62962 -11.33876 -11.24299 -11.14579 -11.13191 -10.75736 -10.40701 -10.32195 -10.07214 -9.97914 -9.87522 -9.64359 -8.91644 -8.62120 -8.42114 -8.09516 -6.50998 -3.92975 2.62678 3.10498 3.22665 3.28673 3.30731 3.39772 3.43072 3.75566 4.00649 4.16436 4.53264 4.60083 4.67295 4.70691 4.80262 4.83063 4.90148 4.96206 4.99231 5.00233 5.09261 5.13500 5.17849 5.29856 5.34527 5.38150 5.41797 5.58409 5.63661 5.65314 5.72448 5.87492 5.95245 5.99641 6.02391 6.08974 6.40627 6.76030 6.78031 6.98568 7.04019 7.46628 7.93179 8.15649 8.45666 8.77167 9.05180 9.40182 9.87908 10.65960 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.027746 B = 0.001949 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.900542 B =14361.568789 C =15092.904863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.064 3.936 4 C 0.060 3.940 5 O -0.371 6.371 6 C 0.077 3.923 7 H 0.064 0.936 8 C -0.114 4.114 9 C -0.132 4.132 10 C 0.106 3.894 11 N -0.628 5.628 12 C 0.709 3.291 13 O -0.596 6.596 14 N -0.724 5.724 15 C 0.127 3.873 16 C 0.429 3.571 17 O -0.599 6.599 18 N -0.549 5.549 19 C -0.304 4.304 20 H 0.106 0.894 21 C 0.025 3.975 22 N -0.894 5.894 23 Si 0.933 3.067 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.112 3.888 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.406 0.594 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.396 0.604 45 H 0.274 0.726 46 H 0.094 0.906 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.468 10.170 -7.625 26.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.013 4.013 4 C -0.017 4.017 5 O -0.289 6.289 6 C 0.018 3.982 7 H 0.083 0.917 8 C -0.151 4.151 9 C -0.170 4.170 10 C -0.017 4.017 11 N -0.368 5.368 12 C 0.410 3.590 13 O -0.475 6.475 14 N -0.384 5.384 15 C -0.001 4.001 16 C 0.215 3.785 17 O -0.485 6.485 18 N -0.184 5.184 19 C -0.434 4.434 20 H 0.124 0.876 21 C -0.178 4.178 22 N -0.534 5.534 23 Si 0.759 3.241 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.012 4.012 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.247 0.753 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.230 0.770 45 H 0.084 0.916 46 H 0.113 0.887 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -23.469 9.949 -7.539 26.582 hybrid contribution 0.898 0.115 0.180 0.923 sum -22.570 10.064 -7.359 25.785 Atomic orbital electron populations 1.22745 0.81141 1.02904 0.99771 1.87990 1.19514 1.27229 1.95347 1.22560 0.92401 0.85536 1.00774 1.22612 0.93222 0.97629 0.88189 1.87953 1.21414 1.81857 1.37658 1.22460 0.81407 0.97001 0.97334 0.91747 1.21569 0.95540 1.03219 0.94821 1.21917 0.95323 0.97692 1.02096 1.21724 0.99752 0.97411 0.82855 1.47109 1.07626 1.75068 1.06997 1.15737 0.81006 0.78030 0.84203 1.90888 1.76000 1.60542 1.20023 1.44962 1.08056 1.71795 1.13556 1.20804 0.89368 1.00867 0.89107 1.19754 0.86156 0.85289 0.87305 1.90482 1.82573 1.58721 1.16760 1.41793 1.08855 1.57088 1.10657 1.19779 0.84662 1.42471 0.96482 0.87618 1.25327 1.00500 0.96860 0.95072 1.69621 1.34846 1.45758 1.03216 0.85755 0.81170 0.77962 0.79173 1.19149 1.20638 1.20625 1.21837 0.79454 0.96751 1.03134 0.94199 0.94107 0.89546 0.91833 0.92473 0.91946 0.91682 0.90746 0.91049 0.91160 0.89774 0.89489 0.90980 0.75349 0.89965 0.90042 0.77008 0.91646 0.88748 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.89 10.67 -40.08 -0.43 -4.32 16 3 C 0.06 0.50 6.32 37.16 0.23 0.74 16 4 C 0.06 0.54 6.13 37.16 0.23 0.76 16 5 O -0.37 -4.01 9.96 -40.08 -0.40 -4.40 16 6 C 0.08 0.79 2.76 -26.61 -0.07 0.72 16 7 H 0.06 0.68 7.79 -51.93 -0.40 0.27 16 8 C -0.11 -0.98 5.54 -26.69 -0.15 -1.13 16 9 C -0.13 -1.12 6.08 -26.61 -0.16 -1.28 16 10 C 0.11 1.12 6.39 -3.72 -0.02 1.09 16 11 N -0.63 -8.45 2.97 -178.50 -0.53 -8.98 16 12 C 0.71 12.17 8.29 -86.91 -0.72 11.45 16 13 O -0.60 -12.03 15.77 5.29 0.08 -11.94 16 14 N -0.72 -12.65 5.44 -66.41 -0.36 -13.01 16 15 C 0.13 2.41 6.16 -5.19 -0.03 2.38 16 16 C 0.43 9.90 7.85 -10.99 -0.09 9.81 16 17 O -0.60 -15.27 15.24 5.55 0.08 -15.18 16 18 N -0.55 -13.66 5.29 -10.97 -0.06 -13.72 16 19 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 20 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 21 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 22 N -0.89 -23.91 13.05 55.50 0.72 -23.19 16 23 Si 0.93 20.52 29.55 -169.99 -5.02 15.49 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 C 0.11 1.38 6.06 -3.71 -0.02 1.36 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.61 8.02 -51.93 -0.42 0.19 16 34 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.97 5.65 -51.93 -0.29 0.68 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.41 6.87 4.93 -40.82 -0.20 6.67 16 42 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.40 9.50 7.90 -40.82 -0.32 9.18 16 45 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 46 H 0.09 1.34 6.87 -51.93 -0.36 0.98 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 387.58 15.07 5.84 5.84 Total: -1.00 -33.12 387.58 -7.42 -40.54 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -7.42 Total: 13.50 kcal Atomic # 6 Polarization: 19.31 SS G_CDS: 0.07 Total: 19.37 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: -0.23 Total: -58.90 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.66 Total: -35.85 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.12 -7.42 -40.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358270430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.010 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds