Wall clock time and date at job start Tue Mar 31 2020 04:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 114.00142 * 2 1 4 4 C 1.52997 * 109.47229 * 180.02562 * 3 2 1 5 5 O 1.42891 * 109.47420 * 64.99691 * 4 3 2 6 6 C 1.42904 * 114.00196 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.49955 * 29.93208 * 6 5 4 8 8 C 1.53037 * 109.50059 * 150.00324 * 6 5 4 9 9 C 1.53045 * 109.53930 * 181.34931 * 8 6 5 10 10 C 1.53192 * 109.30888 * 298.63433 * 9 8 6 11 11 N 1.46924 * 108.77755 * 54.63334 * 10 9 8 12 12 C 1.34774 * 120.62674 * 126.36957 * 11 10 9 13 13 O 1.21586 * 119.99859 * 185.22739 * 12 11 10 14 14 N 1.34774 * 120.00446 * 5.22162 * 12 11 10 15 15 C 1.46501 * 120.00103 * 175.01840 * 14 12 11 16 16 C 1.50701 * 109.47185 * 180.02562 * 15 14 12 17 17 O 1.21301 * 120.00020 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00439 * 180.02562 * 16 15 14 19 19 C 1.37096 * 120.00486 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99626 * 0.02562 * 19 18 16 21 21 C 1.38940 * 120.00187 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00091 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00268 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47003 * 269.99889 * 23 21 19 25 25 H 1.48495 * 109.46922 * 29.99453 * 23 21 19 26 26 H 1.48499 * 109.47684 * 149.99903 * 23 21 19 27 27 C 1.46926 * 118.74099 * 306.63997 * 11 10 9 28 28 H 1.08993 * 109.46883 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47011 * 300.00088 * 1 2 3 30 30 H 1.09003 * 109.46920 * 60.00334 * 1 2 3 31 31 H 1.08997 * 109.46869 * 59.99963 * 3 2 1 32 32 H 1.08999 * 109.46748 * 300.00079 * 3 2 1 33 33 H 1.09003 * 109.46904 * 304.99515 * 4 3 2 34 34 H 1.09003 * 109.47093 * 185.00044 * 4 3 2 35 35 H 1.08998 * 109.46435 * 61.32672 * 8 6 5 36 36 H 1.09001 * 109.44602 * 301.36028 * 8 6 5 37 37 H 1.09001 * 109.49402 * 178.68418 * 9 8 6 38 38 H 1.08990 * 109.49535 * 58.58435 * 9 8 6 39 39 H 1.09001 * 109.58590 * 294.84188 * 10 9 8 40 40 H 1.09000 * 109.69981 * 174.49630 * 10 9 8 41 41 H 0.96997 * 120.00252 * 355.02848 * 14 12 11 42 42 H 1.08998 * 109.47396 * 60.00479 * 15 14 12 43 43 H 1.09004 * 109.47131 * 299.99805 * 15 14 12 44 44 H 0.96999 * 119.99688 * 359.97438 * 18 16 15 45 45 H 0.96997 * 120.00341 * 359.97438 * 22 21 19 46 46 H 1.09000 * 109.58432 * 173.14455 * 27 11 10 47 47 H 1.08997 * 109.58301 * 293.57408 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9649 0.5797 -1.2218 6 6 5.3812 0.4191 -1.3244 7 1 5.8049 0.2832 -0.3295 8 6 5.6953 -0.8065 -2.1854 9 6 7.2114 -0.9989 -2.2681 10 6 7.8427 0.2307 -2.9287 11 7 7.4261 1.4306 -2.1902 12 6 8.3423 2.2997 -1.7194 13 8 7.9923 3.2374 -1.0291 14 7 9.6465 2.1293 -2.0136 15 6 10.6290 3.1320 -1.5946 16 6 12.0032 2.7073 -2.0442 17 8 12.1478 1.6688 -2.6542 18 7 13.0718 3.4807 -1.7677 19 6 14.3220 3.0941 -2.1762 20 1 14.4506 2.1699 -2.7201 21 6 15.4235 3.8917 -1.8916 22 7 15.2670 5.0165 -1.2303 23 14 17.1269 3.3653 -2.4489 24 1 17.7619 2.5414 -1.3890 25 1 17.0150 2.5668 -3.6959 26 1 17.9582 4.5689 -2.7047 27 6 5.9920 1.6619 -1.9695 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5683 0.8410 34 1 3.9785 2.1766 0.0889 35 1 5.2928 -0.6593 -3.1875 36 1 5.2410 -1.6905 -1.7378 37 1 7.4337 -1.8854 -2.8620 38 1 7.6178 -1.1215 -1.2643 39 1 7.5064 0.3030 -3.9630 40 1 8.9290 0.1445 -2.9030 41 1 9.9346 1.3429 -2.5028 42 1 10.6139 3.2239 -0.5086 43 1 10.3811 4.0936 -2.0442 44 1 12.9562 4.3109 -1.2796 45 1 14.3824 5.2901 -0.9412 46 1 5.8575 2.5185 -1.3090 47 1 5.5017 1.8533 -2.9240 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358270431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:55 Heat of formation + Delta-G solvation = -151.880500 kcal Electronic energy + Delta-G solvation = -28122.920895 eV Core-core repulsion = 23920.339739 eV Total energy + Delta-G solvation = -4202.581156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.54231 -39.07359 -38.42694 -37.88418 -36.48291 -34.78223 -33.90584 -32.71197 -31.30084 -31.16689 -29.65024 -27.61633 -26.63008 -25.35397 -24.11237 -23.42892 -22.65048 -21.24276 -19.99005 -19.62788 -18.48261 -18.02777 -17.26311 -17.01829 -16.34967 -16.13997 -15.81931 -15.76191 -15.55218 -15.19308 -14.87903 -14.64973 -14.36328 -14.24280 -13.93497 -13.70585 -13.64281 -13.26453 -13.18911 -13.07057 -12.64185 -12.40156 -12.05175 -12.02343 -11.60998 -11.54667 -11.32314 -11.27974 -11.15744 -11.01672 -10.79492 -10.26979 -10.09874 -10.08161 -9.97768 -9.93209 -9.68389 -9.01421 -8.68980 -8.50844 -8.16761 -6.85612 -4.00260 2.54026 3.20913 3.24636 3.30683 3.33229 3.39816 3.49801 3.69034 3.94218 4.20864 4.48908 4.58127 4.62296 4.67787 4.71724 4.75082 4.83190 4.92789 4.94896 4.96601 5.05574 5.14874 5.16313 5.24631 5.29673 5.32405 5.38526 5.50962 5.58246 5.61282 5.66480 5.75960 5.84580 5.86841 5.88282 5.97624 6.32548 6.63820 6.73186 6.93456 6.96328 7.67012 7.96307 8.06226 8.44534 8.62816 8.68276 9.33545 9.67350 10.57267 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.033811 B = 0.001876 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.928527 B =14925.704322 C =15536.398932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.063 3.937 4 C 0.061 3.939 5 O -0.370 6.370 6 C 0.077 3.923 7 H 0.065 0.935 8 C -0.114 4.114 9 C -0.132 4.132 10 C 0.106 3.894 11 N -0.627 5.627 12 C 0.710 3.290 13 O -0.597 6.597 14 N -0.724 5.724 15 C 0.127 3.873 16 C 0.431 3.569 17 O -0.592 6.592 18 N -0.561 5.561 19 C -0.387 4.387 20 H 0.102 0.898 21 C -0.006 4.006 22 N -0.894 5.894 23 Si 1.095 2.905 24 H -0.283 1.283 25 H -0.283 1.283 26 H -0.280 1.280 27 C 0.111 3.889 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.407 0.593 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.379 0.621 45 H 0.264 0.736 46 H 0.093 0.907 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.339 -8.848 0.860 26.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.288 6.288 6 C 0.018 3.982 7 H 0.083 0.917 8 C -0.151 4.151 9 C -0.170 4.170 10 C -0.017 4.017 11 N -0.367 5.367 12 C 0.411 3.589 13 O -0.476 6.476 14 N -0.384 5.384 15 C -0.001 4.001 16 C 0.217 3.783 17 O -0.478 6.478 18 N -0.197 5.197 19 C -0.516 4.516 20 H 0.120 0.880 21 C -0.209 4.209 22 N -0.532 5.532 23 Si 0.921 3.079 24 H -0.210 1.210 25 H -0.208 1.208 26 H -0.205 1.205 27 C -0.013 4.013 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.247 0.753 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.213 0.787 45 H 0.075 0.925 46 H 0.112 0.888 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -23.848 -8.608 0.796 25.366 hybrid contribution -1.669 0.050 0.319 1.700 sum -25.516 -8.558 1.115 26.936 Atomic orbital electron populations 1.22742 0.81118 1.02826 0.99885 1.87962 1.19551 1.27421 1.95384 1.22576 0.92369 0.85416 1.00981 1.22608 0.93235 0.98071 0.87685 1.87958 1.21178 1.81625 1.38050 1.22372 0.81177 0.95242 0.99435 0.91688 1.21560 0.95706 0.97116 1.00744 1.21918 0.94873 0.98042 1.02213 1.21735 1.00247 0.84094 0.95671 1.47087 1.05494 1.24646 1.59451 1.15720 0.80857 0.82333 0.79988 1.90883 1.80057 1.33613 1.43007 1.44944 1.04638 1.27143 1.61632 1.20787 0.87245 0.91521 1.00561 1.19670 0.85461 0.86752 0.86392 1.90493 1.85416 1.25770 1.46114 1.41853 1.06834 1.21182 1.49850 1.20605 0.83488 1.10092 1.37400 0.88014 1.26593 1.04584 0.93832 0.95923 1.70866 1.25717 1.21494 1.35094 0.83070 0.72730 0.75782 0.76327 1.20988 1.20849 1.20531 1.21770 0.79141 0.98661 1.01741 0.89611 0.94188 0.94014 0.91756 0.92278 0.92304 0.91349 0.90797 0.90821 0.89710 0.91146 0.90937 0.89529 0.75275 0.90002 0.90111 0.78705 0.92479 0.88841 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.71 10.67 -40.08 -0.43 -4.14 16 3 C 0.06 0.49 6.32 37.16 0.23 0.73 16 4 C 0.06 0.54 6.13 37.16 0.23 0.76 16 5 O -0.37 -3.97 9.96 -40.08 -0.40 -4.37 16 6 C 0.08 0.79 2.75 -26.83 -0.07 0.71 16 7 H 0.07 0.70 7.79 -51.93 -0.40 0.29 16 8 C -0.11 -1.00 5.54 -26.69 -0.15 -1.15 16 9 C -0.13 -1.13 6.08 -26.61 -0.16 -1.29 16 10 C 0.11 1.09 6.39 -3.71 -0.02 1.07 16 11 N -0.63 -8.18 2.98 -178.76 -0.53 -8.71 16 12 C 0.71 11.88 8.29 -86.92 -0.72 11.16 16 13 O -0.60 -11.69 15.77 5.29 0.08 -11.61 16 14 N -0.72 -12.44 5.44 -66.41 -0.36 -12.80 16 15 C 0.13 2.37 6.16 -5.19 -0.03 2.34 16 16 C 0.43 9.90 7.85 -10.99 -0.09 9.81 16 17 O -0.59 -15.15 15.24 5.54 0.08 -15.07 16 18 N -0.56 -13.78 5.28 -10.96 -0.06 -13.84 16 19 C -0.39 -10.57 9.68 -14.94 -0.14 -10.72 16 20 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 21 C -0.01 -0.15 5.50 -17.47 -0.10 -0.25 16 22 N -0.89 -24.55 13.68 55.49 0.76 -23.79 16 23 Si 1.10 23.64 29.92 -169.99 -5.09 18.56 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 27 C 0.11 1.28 6.03 -3.93 -0.02 1.26 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.07 0.54 8.02 -51.93 -0.42 0.12 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.96 5.64 -51.93 -0.29 0.66 16 41 H 0.41 6.81 4.93 -40.82 -0.20 6.61 16 42 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 44 H 0.38 8.66 6.73 -40.82 -0.27 8.38 16 45 H 0.26 6.98 6.78 -40.82 -0.28 6.70 16 46 H 0.09 1.21 6.87 -51.93 -0.36 0.85 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 385.82 15.07 5.81 5.81 Total: -1.00 -34.13 385.82 -7.37 -41.50 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -7.31 Total: 12.72 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 0.06 Total: 15.74 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.19 Total: -59.14 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -0.66 Total: -35.18 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -5.09 Total: 18.56 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.13 -7.37 -41.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358270431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.383 kcal (2) G-P(sol) polarization free energy of solvation -34.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds