Wall clock time and date at job start Tue Mar 31 2020 04:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46889 * 179.97438 * 4 3 2 6 6 O 1.42904 * 109.47224 * 65.00060 * 5 4 3 7 7 C 1.42895 * 114.00294 * 179.97438 * 6 5 4 8 8 H 1.08998 * 110.88787 * 330.70317 * 7 6 5 9 9 C 1.55152 * 111.00575 * 206.82079 * 7 6 5 10 10 C 1.54376 * 102.92117 * 206.45540 * 9 7 6 11 11 N 1.47026 * 107.28800 * 22.13472 * 10 9 7 12 12 C 1.34772 * 125.64840 * 181.05867 * 11 10 9 13 13 O 1.21587 * 120.00229 * 180.02562 * 12 11 10 14 14 N 1.34775 * 120.00238 * 0.03978 * 12 11 10 15 15 C 1.46498 * 120.00330 * 179.97438 * 14 12 11 16 16 C 1.50704 * 109.47103 * 180.02562 * 15 14 12 17 17 O 1.21287 * 120.00276 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99779 * 180.02562 * 16 15 14 19 19 C 1.37092 * 119.99828 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00013 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99880 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99742 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00235 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.46898 * 89.99896 * 23 21 19 25 25 H 1.48497 * 109.47195 * 210.00174 * 23 21 19 26 26 H 1.48506 * 109.46762 * 330.00050 * 23 21 19 27 27 C 1.47425 * 108.70245 * 1.09440 * 11 10 9 28 28 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 29 29 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 31 31 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 32 32 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 33 33 H 1.08997 * 109.47171 * 299.99768 * 4 3 2 34 34 H 1.08997 * 109.47442 * 59.99964 * 4 3 2 35 35 H 1.09004 * 109.47113 * 184.99738 * 5 4 3 36 36 H 1.08993 * 109.47646 * 305.00069 * 5 4 3 37 37 H 1.08999 * 110.71874 * 324.78448 * 9 7 6 38 38 H 1.08994 * 110.72659 * 88.06282 * 9 7 6 39 39 H 1.09002 * 109.84210 * 262.73047 * 10 9 7 40 40 H 1.09003 * 109.90257 * 141.57472 * 10 9 7 41 41 H 0.97009 * 119.99976 * 0.02562 * 14 12 11 42 42 H 1.08994 * 109.47381 * 300.00929 * 15 14 12 43 43 H 1.09006 * 109.47014 * 60.00777 * 15 14 12 44 44 H 0.97002 * 120.00124 * 0.02562 * 18 16 15 45 45 H 0.97003 * 119.99700 * 179.97438 * 22 21 19 46 46 H 1.08997 * 110.36651 * 217.03011 * 27 11 10 47 47 H 1.09003 * 110.36449 * 94.70518 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 -0.0001 6 8 3.3973 3.5463 1.2204 7 6 3.7189 4.9349 1.3223 8 1 4.6226 5.1668 0.7588 9 6 3.8628 5.3650 2.8060 10 6 3.5185 6.8693 2.7643 11 7 2.7210 7.1015 1.5512 12 6 2.2409 8.2928 1.1429 13 8 1.5900 8.3672 0.1186 14 7 2.4825 9.4017 1.8697 15 6 1.9612 10.6967 1.4256 16 6 2.3691 11.7656 2.4065 17 8 3.0306 11.4744 3.3805 18 7 1.9988 13.0452 2.2015 19 6 2.3703 14.0177 3.0936 20 1 2.9600 13.7584 3.9604 21 6 1.9890 15.3369 2.8819 22 7 2.3455 16.2691 3.7367 23 14 0.9695 15.7854 1.3822 24 1 -0.4738 15.6825 1.7160 25 1 1.2838 17.1764 0.9679 26 1 1.2882 14.8538 0.2704 27 6 2.5326 5.8152 0.8559 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 3.8332 0.9769 0.8908 34 1 3.8340 0.9766 -0.8891 35 1 4.9081 3.0256 -0.0892 36 1 3.3498 3.4411 -0.8424 37 1 3.1548 4.8249 3.4345 38 1 4.8842 5.2121 3.1546 39 1 4.4352 7.4577 2.7235 40 1 2.9394 7.1420 3.6466 41 1 3.0023 9.3425 2.6867 42 1 2.3661 10.9333 0.4417 43 1 0.8736 10.6506 1.3694 44 1 1.4694 13.2781 1.4227 45 1 2.0796 17.1902 3.5888 46 1 2.5683 5.9589 -0.2240 47 1 1.5856 5.3613 1.1480 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358273207.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:26 Heat of formation + Delta-G solvation = -147.196689 kcal Electronic energy + Delta-G solvation = -27550.666522 eV Core-core repulsion = 23348.288471 eV Total energy + Delta-G solvation = -4202.378051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.35011 -39.09471 -38.49217 -37.97407 -36.41259 -34.49688 -33.72209 -32.33401 -31.79617 -31.12252 -29.53353 -28.80959 -27.31221 -24.49381 -23.39256 -23.18150 -22.81877 -21.44741 -19.85456 -19.63722 -18.81730 -17.98477 -17.68655 -17.27981 -16.42110 -15.97578 -15.80474 -15.67453 -15.29992 -15.11762 -14.97435 -14.74206 -14.25828 -14.07280 -13.84565 -13.60966 -13.26504 -13.13313 -13.07472 -12.95009 -12.65315 -12.47643 -12.19414 -12.10525 -12.03607 -11.85728 -11.74116 -11.64969 -11.35719 -11.22445 -10.95811 -10.63115 -10.11945 -10.05283 -10.02803 -9.92730 -9.68837 -8.99336 -8.75744 -8.50450 -8.29300 -6.39939 -3.92440 2.49935 3.00895 3.05690 3.13549 3.22028 3.25807 3.34009 3.58706 3.99588 4.04875 4.30301 4.35808 4.52491 4.60673 4.62780 4.67279 4.73814 4.81796 4.86061 4.94251 4.97266 5.00425 5.15116 5.15297 5.27136 5.35987 5.42093 5.52085 5.52488 5.61388 5.66323 5.71714 5.75091 5.77326 5.81483 5.87293 6.12322 6.65110 6.75382 6.86903 7.09824 7.45880 8.01110 8.10551 8.45332 8.71710 8.82596 9.30868 9.64612 10.72211 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.028854 B = 0.001780 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.174569 B =15723.810808 C =16271.228370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.065 3.935 5 C 0.061 3.939 6 O -0.362 6.362 7 C 0.075 3.925 8 H 0.080 0.920 9 C -0.123 4.123 10 C 0.099 3.901 11 N -0.637 5.637 12 C 0.725 3.275 13 O -0.594 6.594 14 N -0.722 5.722 15 C 0.126 3.874 16 C 0.439 3.561 17 O -0.579 6.579 18 N -0.576 5.576 19 C -0.310 4.310 20 H 0.122 0.878 21 C 0.045 3.955 22 N -0.875 5.875 23 Si 0.879 3.121 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.267 1.267 27 C 0.109 3.891 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.408 0.592 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.375 0.625 45 H 0.275 0.725 46 H 0.078 0.922 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.307 -30.798 -8.093 31.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.300 6.300 4 C -0.012 4.012 5 C -0.016 4.016 6 O -0.280 6.280 7 C 0.015 3.985 8 H 0.097 0.903 9 C -0.161 4.161 10 C -0.025 4.025 11 N -0.377 5.377 12 C 0.426 3.574 13 O -0.473 6.473 14 N -0.380 5.380 15 C -0.003 4.003 16 C 0.225 3.775 17 O -0.464 6.464 18 N -0.214 5.214 19 C -0.438 4.438 20 H 0.139 0.861 21 C -0.159 4.159 22 N -0.514 5.514 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.192 1.192 27 C -0.015 4.015 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.246 0.754 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.208 0.792 45 H 0.086 0.914 46 H 0.096 0.904 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.013 -30.520 -7.991 31.613 hybrid contribution -0.215 0.482 -0.924 1.064 sum 1.798 -30.039 -8.915 31.385 Atomic orbital electron populations 1.21742 0.93622 1.02178 1.03410 1.22462 0.95833 0.83800 0.99855 1.87994 1.20367 1.26235 1.95366 1.22500 0.82388 0.95457 1.00843 1.22627 0.98376 0.92631 0.87963 1.87986 1.80877 1.21465 1.37676 1.23231 0.96579 0.81395 0.97245 0.90252 1.22687 1.03466 0.94250 0.95711 1.22044 0.95878 0.96179 0.88366 1.47275 1.57570 1.06178 1.26693 1.15295 0.79852 0.79181 0.83034 1.90908 1.45426 1.85090 1.25895 1.44746 1.58783 1.05508 1.28949 1.20822 0.99751 0.82000 0.97726 1.19645 0.85915 0.83495 0.88439 1.90529 1.43128 1.81147 1.31559 1.42112 1.48385 1.06842 1.24060 1.19439 1.32774 0.86102 1.05534 0.86089 1.25060 0.97610 0.95399 0.97804 1.69621 1.44563 1.01669 1.35509 0.86672 0.81103 0.79228 0.82509 1.19385 1.19999 1.19195 1.22421 0.98916 0.82273 0.97871 0.91802 0.91170 0.91647 0.93589 0.93419 0.92401 0.91841 0.91515 0.92043 0.89257 0.89351 0.90945 0.90723 0.75387 0.89851 0.89812 0.79215 0.91404 0.90366 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.06 0.37 6.66 37.16 0.25 0.62 16 3 O -0.38 -3.52 10.31 -40.08 -0.41 -3.93 16 4 C 0.06 0.43 6.32 37.16 0.23 0.67 16 5 C 0.06 0.43 6.18 37.16 0.23 0.66 16 6 O -0.36 -3.42 10.12 -40.08 -0.41 -3.83 16 7 C 0.07 0.66 3.51 -24.58 -0.09 0.57 16 8 H 0.08 0.61 7.86 -51.93 -0.41 0.20 16 9 C -0.12 -0.99 6.69 -24.87 -0.17 -1.15 16 10 C 0.10 1.00 6.15 -3.03 -0.02 0.98 16 11 N -0.64 -8.49 3.33 -176.20 -0.59 -9.08 16 12 C 0.72 12.30 8.49 -86.92 -0.74 11.56 16 13 O -0.59 -11.92 16.60 5.29 0.09 -11.83 16 14 N -0.72 -12.32 5.49 -66.42 -0.36 -12.68 16 15 C 0.13 2.26 6.15 -5.19 -0.03 2.23 16 16 C 0.44 9.78 7.85 -10.98 -0.09 9.69 16 17 O -0.58 -14.70 15.24 5.55 0.08 -14.62 16 18 N -0.58 -13.51 5.09 -10.96 -0.06 -13.57 16 19 C -0.31 -8.58 10.16 -14.94 -0.15 -8.73 16 20 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 21 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 22 N -0.87 -25.02 13.96 55.50 0.77 -24.24 16 23 Si 0.88 19.12 27.74 -169.99 -4.71 14.40 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.27 -5.32 6.52 56.52 0.37 -4.96 16 27 C 0.11 1.27 6.64 -2.53 -0.02 1.26 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.33 8.11 -51.93 -0.42 -0.09 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.41 6.82 6.42 -40.82 -0.26 6.56 16 42 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.37 7.77 5.76 -40.82 -0.24 7.54 16 45 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 47 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 393.21 15.07 5.93 5.93 Total: -1.00 -34.78 393.21 -7.61 -42.39 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -7.64 Total: 12.12 kcal Atomic # 6 Polarization: 19.25 SS G_CDS: -0.30 Total: 18.95 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.23 Total: -59.57 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -0.65 Total: -34.21 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.71 Total: 14.40 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.78 -7.61 -42.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358273207.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.811 kcal (2) G-P(sol) polarization free energy of solvation -34.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds