Wall clock time and date at job start Tue Mar 31 2020 04:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47041 * 2 1 4 4 C 1.42901 * 113.99942 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46997 * 179.97438 * 4 3 2 6 6 O 1.42900 * 109.47203 * 64.99734 * 5 4 3 7 7 C 1.42902 * 114.00049 * 179.97438 * 6 5 4 8 8 H 1.09000 * 110.63948 * 26.85368 * 7 6 5 9 9 C 1.55155 * 110.71912 * 149.99861 * 7 6 5 10 10 C 1.54912 * 101.57968 * 153.86666 * 9 7 6 11 11 N 1.47426 * 104.83261 * 322.99067 * 10 9 7 12 12 C 1.34780 * 125.64645 * 203.86243 * 11 10 9 13 13 O 1.21591 * 119.99544 * 180.02562 * 12 11 10 14 14 N 1.34766 * 120.00282 * 0.02598 * 12 11 10 15 15 C 1.46503 * 120.00379 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.47370 * 179.97438 * 15 14 12 17 17 O 1.21293 * 119.99937 * 0.02562 * 16 15 14 18 18 N 1.34783 * 120.00035 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00092 * 179.97438 * 18 16 15 20 20 H 1.08008 * 119.99882 * 0.02562 * 19 18 16 21 21 C 1.38945 * 119.99883 * 179.97438 * 19 18 16 22 22 N 1.31420 * 119.99971 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 120.00280 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47092 * 89.99579 * 23 21 19 25 25 H 1.48505 * 109.47383 * 209.99719 * 23 21 19 26 26 H 1.48499 * 109.47046 * 329.99982 * 23 21 19 27 27 C 1.47024 * 108.70449 * 24.12870 * 11 10 9 28 28 H 1.09003 * 109.47287 * 299.99965 * 1 2 3 29 29 H 1.08997 * 109.47227 * 60.00205 * 1 2 3 30 30 H 1.09005 * 109.46889 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47167 * 239.99553 * 2 1 3 32 32 H 1.08997 * 109.47227 * 119.99795 * 2 1 3 33 33 H 1.08994 * 109.47284 * 59.99529 * 4 3 2 34 34 H 1.09008 * 109.46726 * 299.99523 * 4 3 2 35 35 H 1.08993 * 109.47140 * 304.99794 * 5 4 3 36 36 H 1.09007 * 109.47035 * 184.99233 * 5 4 3 37 37 H 1.08997 * 111.00368 * 35.79858 * 9 7 6 38 38 H 1.08989 * 111.00661 * 271.93987 * 9 7 6 39 39 H 1.09002 * 110.36496 * 204.15483 * 10 9 7 40 40 H 1.08995 * 110.46379 * 81.87851 * 10 9 7 41 41 H 0.97002 * 120.00118 * 359.97438 * 14 12 11 42 42 H 1.08996 * 109.47174 * 300.00581 * 15 14 12 43 43 H 1.09004 * 109.46655 * 60.00154 * 15 14 12 44 44 H 0.96994 * 119.99791 * 0.02562 * 18 16 15 45 45 H 0.96995 * 119.99921 * 180.02562 * 22 21 19 46 46 H 1.08995 * 109.88316 * 118.35549 * 27 11 10 47 47 H 1.09002 * 109.88101 * 239.52444 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8253 2.9384 -0.0012 6 8 3.3984 3.5458 1.2198 7 6 3.7202 4.9344 1.3218 8 1 3.7921 5.3858 0.3323 9 6 2.6714 5.6786 2.1899 10 6 3.5017 6.8715 2.7261 11 7 4.8460 6.3171 2.9683 12 6 5.7581 6.8150 3.8267 13 8 6.8403 6.2735 3.9455 14 7 5.4706 7.9130 4.5533 15 6 6.4618 8.4540 5.4867 16 6 5.8969 9.6736 6.1681 17 8 4.7764 10.0534 5.9008 18 7 6.6364 10.3419 7.0754 19 6 6.1228 11.4517 7.6950 20 1 5.1253 11.7904 7.4563 21 6 6.8849 12.1403 8.6307 22 7 6.3924 13.2039 9.2250 23 14 8.6097 11.5542 9.0440 24 1 9.5857 12.2079 8.1355 25 1 8.9290 11.9079 10.4506 26 1 8.6858 10.0809 8.8746 27 6 5.0295 5.1348 2.1138 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8333 0.9767 -0.8907 34 1 3.8340 0.9765 0.8893 35 1 3.3492 3.4411 -0.8429 36 1 4.9082 3.0254 -0.0911 37 1 2.3219 5.0474 3.0069 38 1 1.8364 6.0258 1.5816 39 1 3.0723 7.2451 3.6556 40 1 3.5480 7.6679 1.9834 41 1 4.6074 8.3452 4.4582 42 1 6.7060 7.6998 6.2347 43 1 7.3638 8.7288 4.9398 44 1 7.5323 10.0380 7.2895 45 1 6.9246 13.6848 9.8779 46 1 5.8578 5.3001 1.4250 47 1 5.2272 4.2584 2.7311 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358273208.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:32 Heat of formation + Delta-G solvation = -146.627704 kcal Electronic energy + Delta-G solvation = -27460.486760 eV Core-core repulsion = 23258.133382 eV Total energy + Delta-G solvation = -4202.353378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.36547 -39.10913 -38.49791 -37.98771 -36.40224 -34.50322 -33.72734 -32.34460 -31.79740 -31.11158 -29.53453 -28.84606 -27.32106 -24.48939 -23.42071 -23.19780 -22.84261 -21.43179 -19.86763 -19.64373 -18.83124 -17.98467 -17.74608 -17.15605 -16.56868 -15.97952 -15.82522 -15.67228 -15.35685 -15.14825 -14.98324 -14.64231 -14.29414 -14.01509 -13.87380 -13.73272 -13.24609 -13.14881 -12.96871 -12.87530 -12.56659 -12.47994 -12.26526 -12.12689 -12.03188 -11.96118 -11.78219 -11.69526 -11.33525 -11.22663 -10.96534 -10.63304 -10.12771 -10.05308 -10.03223 -9.93556 -9.68991 -9.01578 -8.76009 -8.51050 -8.29427 -6.40033 -3.92572 2.50754 3.00731 3.05418 3.13367 3.20209 3.25426 3.33894 3.58458 3.98642 4.04729 4.24302 4.33589 4.53218 4.59376 4.60937 4.68821 4.72642 4.81409 4.86528 4.92928 5.00440 5.01208 5.15101 5.16767 5.22026 5.34750 5.40238 5.48662 5.51051 5.57002 5.61672 5.70193 5.71058 5.80368 5.81467 5.86958 6.14561 6.64330 6.73945 6.86334 7.08256 7.45730 8.00903 8.09588 8.45156 8.71135 8.82449 9.30695 9.64387 10.72132 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.033249 B = 0.001705 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.921074 B =16415.377474 C =16785.017508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.382 6.382 4 C 0.064 3.936 5 C 0.061 3.939 6 O -0.362 6.362 7 C 0.077 3.923 8 H 0.081 0.919 9 C -0.125 4.125 10 C 0.097 3.903 11 N -0.636 5.636 12 C 0.725 3.275 13 O -0.595 6.595 14 N -0.722 5.722 15 C 0.126 3.874 16 C 0.439 3.561 17 O -0.579 6.579 18 N -0.576 5.576 19 C -0.310 4.310 20 H 0.122 0.878 21 C 0.046 3.954 22 N -0.875 5.875 23 Si 0.879 3.121 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.267 1.267 27 C 0.109 3.891 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.408 0.592 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.375 0.625 45 H 0.275 0.725 46 H 0.067 0.933 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.266 -23.858 -20.308 31.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.301 6.301 4 C -0.013 4.013 5 C -0.016 4.016 6 O -0.280 6.280 7 C 0.018 3.982 8 H 0.099 0.901 9 C -0.164 4.164 10 C -0.026 4.026 11 N -0.376 5.376 12 C 0.426 3.574 13 O -0.474 6.474 14 N -0.380 5.380 15 C -0.003 4.003 16 C 0.225 3.775 17 O -0.464 6.464 18 N -0.214 5.214 19 C -0.438 4.438 20 H 0.139 0.861 21 C -0.159 4.159 22 N -0.514 5.514 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.192 1.192 27 C -0.015 4.015 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.246 0.754 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.208 0.792 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.346 -23.698 -20.002 31.653 hybrid contribution 1.362 -0.186 0.252 1.398 sum -4.984 -23.884 -19.750 31.390 Atomic orbital electron populations 1.21738 0.93649 1.02207 1.03286 1.22463 0.95783 0.83818 0.99945 1.87966 1.20473 1.26265 1.95395 1.22515 0.82256 0.95539 1.00975 1.22624 0.98605 0.92681 0.87650 1.88032 1.79938 1.22034 1.38031 1.23118 0.93937 0.82453 0.98659 0.90109 1.22856 0.97206 0.96011 1.00279 1.22334 0.82261 0.96266 1.01709 1.47289 1.15550 1.31104 1.43664 1.15286 0.82937 0.80606 0.78530 1.90906 1.22891 1.62688 1.70890 1.44751 1.20460 1.29193 1.43635 1.20820 0.91418 0.95407 0.92634 1.19643 0.87278 0.86426 0.84155 1.90531 1.19833 1.69583 1.66418 1.42109 1.15543 1.26664 1.37069 1.19441 1.03463 1.01723 1.19220 0.86082 1.25058 0.98565 0.95863 0.96376 1.69620 1.37598 1.17452 1.26690 0.86672 0.84348 0.79177 0.79312 1.19399 1.19994 1.19196 1.22157 0.97412 0.88576 0.93352 0.91654 0.91896 0.91154 0.93588 0.93346 0.91821 0.92275 0.92155 0.91468 0.89267 0.89131 0.89837 0.90949 0.75377 0.89837 0.89835 0.79218 0.91401 0.91502 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.46 16 2 C 0.06 0.36 6.66 37.16 0.25 0.61 16 3 O -0.38 -3.40 10.31 -40.09 -0.41 -3.81 16 4 C 0.06 0.43 6.32 37.16 0.23 0.67 16 5 C 0.06 0.43 6.16 37.16 0.23 0.65 16 6 O -0.36 -3.49 10.04 -40.09 -0.40 -3.89 16 7 C 0.08 0.67 3.45 -24.90 -0.09 0.58 16 8 H 0.08 0.55 7.82 -51.93 -0.41 0.15 16 9 C -0.13 -1.06 6.81 -24.58 -0.17 -1.23 16 10 C 0.10 0.98 6.57 -2.53 -0.02 0.96 16 11 N -0.64 -8.39 3.33 -176.24 -0.59 -8.98 16 12 C 0.72 12.24 8.49 -86.93 -0.74 11.50 16 13 O -0.59 -11.86 16.67 5.29 0.09 -11.77 16 14 N -0.72 -12.28 5.49 -66.42 -0.36 -12.65 16 15 C 0.13 2.26 6.15 -5.19 -0.03 2.23 16 16 C 0.44 9.76 7.85 -10.98 -0.09 9.67 16 17 O -0.58 -14.68 15.24 5.55 0.08 -14.60 16 18 N -0.58 -13.49 5.09 -10.96 -0.06 -13.54 16 19 C -0.31 -8.57 10.16 -14.94 -0.15 -8.72 16 20 H 0.12 3.80 7.39 -52.48 -0.39 3.41 16 21 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 22 N -0.87 -25.01 13.96 55.50 0.77 -24.23 16 23 Si 0.88 19.09 27.74 -169.99 -4.71 14.38 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 27 C 0.11 1.22 6.64 -3.06 -0.02 1.20 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 35 H 0.06 0.38 8.11 -51.93 -0.42 -0.04 16 36 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 0.60 8.14 -51.94 -0.42 0.18 16 39 H 0.08 0.86 7.31 -51.93 -0.38 0.48 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.41 6.79 5.92 -40.82 -0.24 6.54 16 42 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 45 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 0.94 8.06 -51.93 -0.42 0.53 16 LS Contribution 392.29 15.07 5.91 5.91 Total: -1.00 -34.88 392.29 -7.56 -42.44 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -7.58 Total: 11.96 kcal Atomic # 6 Polarization: 19.09 SS G_CDS: -0.30 Total: 18.79 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.23 Total: -59.40 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.64 Total: -34.07 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.38 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.88 -7.56 -42.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358273208.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.189 kcal (2) G-P(sol) polarization free energy of solvation -34.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds