Wall clock time and date at job start Tue Mar 31 2020 06:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34895 * 117.00478 * 2 1 4 4 O 1.21619 * 119.99559 * 359.97438 * 3 2 1 5 5 C 1.46491 * 120.00227 * 179.97438 * 3 2 1 6 6 C 1.37992 * 126.26580 * 179.97438 * 5 3 2 7 7 C 1.39791 * 106.97000 * 180.02562 * 6 5 3 8 8 S 1.76206 * 126.07791 * 180.02562 * 7 6 5 9 9 O 1.42094 * 106.40025 * 23.52283 * 8 7 6 10 10 O 1.42106 * 106.40023 * 156.44370 * 8 7 6 11 11 N 1.65604 * 107.21864 * 269.98191 * 8 7 6 12 12 C 1.47063 * 136.05757 * 269.62733 * 11 8 7 13 13 C 1.53228 * 88.08276 * 207.20559 * 12 11 8 14 14 O 1.42898 * 114.02134 * 87.71593 * 13 12 11 15 15 C 1.50702 * 114.50716 * 220.45944 * 13 12 11 16 16 H 1.08003 * 120.00068 * 93.84320 * 15 13 12 17 17 C 1.37879 * 119.99860 * 273.84269 * 15 13 12 18 18 N 1.31511 * 120.00342 * 0.02562 * 17 15 13 19 19 Si 1.86804 * 119.99932 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47287 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46636 * 120.00515 * 19 17 15 22 22 H 1.48494 * 109.47546 * 240.00326 * 19 17 15 23 23 C 1.47060 * 136.05471 * 90.00111 * 11 8 7 24 24 C 1.35483 * 107.84595 * 359.97438 * 7 6 5 25 25 N 1.34964 * 108.98297 * 0.02562 * 24 7 6 26 26 H 0.97000 * 125.63417 * 179.97438 * 25 24 7 27 27 H 1.08998 * 109.47044 * 300.00768 * 1 2 3 28 28 H 1.09004 * 109.46471 * 59.99399 * 1 2 3 29 29 H 1.08999 * 109.47471 * 179.97438 * 1 2 3 30 30 H 1.08004 * 126.51428 * 359.97438 * 6 5 3 31 31 H 1.08997 * 113.47132 * 321.93997 * 12 11 8 32 32 H 1.09010 * 113.46414 * 92.37814 * 12 11 8 33 33 H 0.96703 * 113.99801 * 86.38274 * 14 13 12 34 34 H 0.96992 * 120.00547 * 179.97438 * 18 17 15 35 35 H 1.09001 * 113.46674 * 267.62163 * 23 11 8 36 36 H 1.08994 * 113.47193 * 38.00639 * 23 11 8 37 37 H 1.07998 * 125.51244 * 180.25943 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4021 2.2219 -0.0005 5 6 3.5274 1.2785 0.0006 6 6 4.2844 2.4322 0.0001 7 6 5.6261 2.0399 0.0004 8 16 7.0217 3.1156 0.0006 9 8 6.5764 4.3505 0.5446 10 8 8.1023 2.3708 0.5456 11 7 7.4106 3.4145 -1.5811 12 6 8.2872 2.8013 -2.5901 13 6 8.4019 4.1781 -3.2526 14 8 9.4541 4.9903 -2.7280 15 6 8.3642 4.1522 -4.7590 16 1 7.4277 4.2931 -5.2782 17 6 9.5252 3.9485 -5.4742 18 7 10.6654 3.7764 -4.8420 19 14 9.4783 3.9156 -7.3414 20 1 8.0844 4.1321 -7.8055 21 1 10.3507 4.9912 -7.8774 22 1 9.9626 2.5981 -7.8257 23 6 7.0362 4.4140 -2.5929 24 6 5.6627 0.6856 0.0015 25 7 4.3988 0.2123 0.0014 26 1 4.1460 -0.7242 0.0017 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.9111 3.4457 -0.0011 31 1 9.2303 2.4375 -2.1824 32 1 7.7826 2.0612 -3.2114 33 1 10.3131 4.8393 -3.1457 34 1 11.4821 3.6328 -5.3452 35 1 6.1950 4.1079 -3.2148 36 1 6.9167 5.4186 -2.1873 37 1 6.5584 0.0822 0.0059 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358882501.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:21 Heat of formation + Delta-G solvation = -116.991844 kcal Electronic energy + Delta-G solvation = -26023.435062 eV Core-core repulsion = 21895.734811 eV Total energy + Delta-G solvation = -4127.700251 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.081 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.74894 -40.18194 -38.59700 -36.77688 -36.63702 -35.31528 -33.91937 -32.11918 -31.72594 -30.34990 -27.93202 -27.80809 -25.04216 -24.67156 -23.69731 -22.09495 -20.67808 -19.69402 -19.53625 -17.87740 -17.48243 -17.36687 -16.79390 -16.51149 -16.15537 -15.75190 -15.35758 -14.97112 -14.77049 -14.21700 -14.02364 -13.82310 -13.65012 -13.45213 -13.11153 -13.03140 -12.81781 -12.54322 -12.07288 -11.62653 -11.60820 -11.54631 -11.46621 -11.22357 -11.16189 -11.06468 -10.93521 -10.74491 -10.44739 -10.18211 -9.79352 -9.25713 -8.86346 -8.74536 -8.50037 -8.02000 -6.34624 -4.44841 0.87454 0.88706 1.82956 2.20712 2.72079 2.75325 3.15863 3.25642 3.28972 3.61863 4.20722 4.34336 4.43416 4.47957 4.70537 4.73649 4.79880 4.89063 5.07126 5.11709 5.23156 5.53702 5.57502 5.87674 6.07304 6.10501 6.13421 6.30488 6.39855 6.47200 6.74447 6.83838 6.91979 7.06921 7.36129 7.54378 7.70652 7.89573 8.58977 9.25922 9.59429 10.71711 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.015583 B = 0.003348 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.376405 B = 8361.673871 C = 9349.008554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.366 6.366 3 C 0.539 3.461 4 O -0.493 6.493 5 C -0.061 4.061 6 C 0.003 3.997 7 C -0.760 4.760 8 S 2.735 3.265 9 O -0.961 6.961 10 O -0.964 6.964 11 N -1.030 6.030 12 C 0.101 3.899 13 C 0.243 3.757 14 O -0.571 6.571 15 C -0.531 4.531 16 H 0.073 0.927 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.908 3.092 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.282 1.282 23 C 0.129 3.871 24 C 0.160 3.840 25 N -0.518 5.518 26 H 0.428 0.572 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.167 0.833 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.394 0.606 34 H 0.273 0.727 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.808 -11.052 6.813 18.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.284 6.284 3 C 0.384 3.616 4 O -0.381 6.381 5 C -0.169 4.169 6 C -0.023 4.023 7 C -0.850 4.850 8 S 2.824 3.176 9 O -0.952 6.952 10 O -0.955 6.955 11 N -0.871 5.871 12 C -0.025 4.025 13 C 0.199 3.801 14 O -0.384 6.384 15 C -0.570 4.570 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.537 5.537 19 Si 0.735 3.265 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.208 1.208 23 C 0.004 3.996 24 C 0.015 3.985 25 N -0.112 5.112 26 H 0.267 0.733 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.121 0.879 30 H 0.185 0.815 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.250 0.750 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -14.168 -10.468 8.166 19.416 hybrid contribution -0.524 -1.397 -1.531 2.137 sum -14.692 -11.864 6.635 20.016 Atomic orbital electron populations 1.23301 0.75311 1.03856 1.02986 1.86538 1.24240 1.32673 1.84924 1.19679 0.86713 0.81866 0.73316 1.90935 1.65251 1.35711 1.46160 1.19401 0.86705 0.88328 1.22506 1.21047 0.89603 0.97728 0.93876 1.31830 1.17350 1.08805 1.26977 1.00650 0.72337 0.72877 0.71696 1.93527 1.82998 1.42198 1.76452 1.93527 1.51683 1.73828 1.76485 1.59955 1.57723 1.42667 1.26725 1.23638 0.91625 1.00973 0.86221 1.19536 0.84480 0.85718 0.90398 1.86037 1.22693 1.64084 1.65618 1.21535 0.95098 1.50128 0.90253 0.90907 1.25089 0.95126 0.93242 0.99717 1.69280 0.99178 1.48920 1.36367 0.86288 0.78435 0.77772 0.84018 1.19500 1.20683 1.20795 1.22881 0.99306 0.90902 0.86473 1.21907 0.87772 0.93723 0.95081 1.42133 1.05918 1.09237 1.53905 0.73310 0.91589 0.91516 0.87881 0.81533 0.91337 0.90695 0.74991 0.91658 0.90061 0.91091 0.78802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.57 101.05 1.07 1.33 16 2 O -0.37 -3.56 10.58 -41.03 -0.43 -3.99 16 3 C 0.54 6.72 7.93 34.05 0.27 6.99 16 4 O -0.49 -7.37 16.68 -19.36 -0.32 -7.70 16 5 C -0.06 -0.76 7.10 -82.00 -0.58 -1.34 16 6 C 0.00 0.04 10.46 -39.09 -0.41 -0.37 16 7 C -0.76 -11.08 6.18 -39.98 -0.25 -11.33 16 8 S 2.73 49.84 6.42 -107.50 -0.69 49.15 16 9 O -0.96 -19.94 17.87 -57.17 -1.02 -20.97 16 10 O -0.96 -19.23 17.85 -57.17 -1.02 -20.25 16 11 N -1.03 -20.26 4.24 -125.35 -0.53 -20.79 16 12 C 0.10 2.13 8.14 -8.65 -0.07 2.06 16 13 C 0.24 5.73 1.57 -91.40 -0.14 5.59 16 14 O -0.57 -14.74 13.53 -35.23 -0.48 -15.21 16 15 C -0.53 -13.02 8.70 -34.44 -0.30 -13.32 16 16 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 17 C 0.07 1.74 5.39 -17.82 -0.10 1.64 16 18 N -0.90 -22.61 11.01 55.43 0.61 -22.00 16 19 Si 0.91 19.16 29.54 -169.99 -5.02 14.14 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 C 0.13 2.64 8.15 -8.51 -0.07 2.57 16 24 C 0.16 1.80 11.61 -17.16 -0.20 1.60 16 25 N -0.52 -5.01 6.07 -9.53 -0.06 -5.07 16 26 H 0.43 2.57 8.96 -40.82 -0.37 2.20 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.17 2.36 8.06 -52.48 -0.42 1.93 16 31 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.07 1.44 8.10 -51.92 -0.42 1.02 16 33 H 0.39 10.28 6.33 45.56 0.29 10.57 16 34 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 35 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 36 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.20 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 345.32 15.07 5.20 5.20 Total: -1.00 -32.94 345.32 -7.96 -40.90 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -3.42 Total: 11.16 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -0.78 Total: -4.58 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.02 Total: -47.86 kcal Atomic # 8 Polarization: -64.84 SS G_CDS: -3.28 Total: -68.12 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Atomic # 16 Polarization: 49.84 SS G_CDS: -0.69 Total: 49.15 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.94 -7.96 -40.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358882501.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.093 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds