Wall clock time and date at job start Tue Mar 31 2020 05:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99815 * 2 1 4 4 H 1.48506 * 109.47297 * 240.00408 * 3 2 1 5 5 H 1.48495 * 109.47328 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47086 * 120.00216 * 3 2 1 7 7 C 1.37873 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00035 * 175.50568 * 7 2 1 9 9 C 1.50694 * 120.00175 * 355.77295 * 7 2 1 10 10 C 1.53005 * 115.55139 * 35.32077 * 9 7 2 11 11 N 1.46498 * 109.46495 * 54.24253 * 10 9 7 12 12 C 1.34786 * 119.99506 * 184.99385 * 11 10 9 13 13 O 1.21633 * 119.99943 * 5.05094 * 12 11 10 14 14 C 1.47185 * 119.99695 * 185.04289 * 12 11 10 15 15 C 1.36011 * 123.46420 * 4.77529 * 14 12 11 16 16 S 1.70443 * 110.81645 * 179.89134 * 15 14 12 17 17 C 1.75504 * 92.44852 * 0.31618 * 16 15 14 18 18 S 1.76196 * 124.71416 * 179.78287 * 17 16 15 19 19 N 1.65593 * 107.21941 * 270.04349 * 18 17 16 20 20 O 1.42103 * 106.40349 * 23.58155 * 18 17 16 21 21 O 1.42101 * 106.40129 * 156.49860 * 18 17 16 22 22 C 1.32771 * 110.57433 * 359.82037 * 17 16 15 23 23 C 1.53005 * 117.49874 * 249.65255 * 9 7 2 24 24 C 1.53003 * 117.50098 * 180.99161 * 9 7 2 25 25 H 0.96992 * 120.00030 * 4.99348 * 1 2 3 26 26 H 1.08995 * 109.46867 * 174.24601 * 10 9 7 27 27 H 1.08997 * 109.46901 * 294.24449 * 10 9 7 28 28 H 0.96993 * 120.00696 * 4.99650 * 11 10 9 29 29 H 1.08000 * 124.58744 * 359.97438 * 15 14 12 30 30 H 0.97001 * 120.00570 * 359.97438 * 19 18 17 31 31 H 0.97001 * 120.00347 * 180.02562 * 19 18 17 32 32 H 1.07999 * 123.46065 * 179.97438 * 22 17 16 33 33 H 1.08999 * 117.49848 * 0.02562 * 23 9 7 34 34 H 1.09006 * 117.49978 * 145.02183 * 23 9 7 35 35 H 1.09001 * 117.49794 * 214.97577 * 24 9 7 36 36 H 1.08996 * 117.49859 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0821 -1.1954 -0.0738 9 6 1.2542 -2.4974 0.0951 10 6 -0.0995 -2.5333 -0.6172 11 7 0.0748 -2.1378 -2.0170 12 6 -1.0011 -1.9988 -2.8169 13 8 -2.1208 -2.1114 -2.3552 14 6 -0.8210 -1.7105 -4.2489 15 6 0.3945 -1.6631 -4.8574 16 16 0.2281 -1.3075 -6.5160 17 6 -1.5201 -1.2088 -6.3966 18 16 -2.5990 -0.8482 -7.7421 19 7 -2.7887 0.7961 -7.7911 20 8 -1.8985 -1.2066 -8.9254 21 8 -3.8668 -1.3884 -7.3957 22 6 -1.9166 -1.4429 -5.1513 23 6 1.3918 -3.2983 1.3915 24 6 2.0775 -3.7869 0.1130 25 1 -0.4850 0.8368 -0.0731 26 1 -0.5066 -3.5434 -0.5729 27 1 -0.7862 -1.8430 -0.1274 28 1 0.9643 -1.9761 -2.3682 29 1 1.3372 -1.8295 -4.3575 30 1 -2.3360 1.3563 -7.1413 31 1 -3.3533 1.1992 -8.4691 32 1 -2.9521 -1.4338 -4.8444 33 1 2.0247 -2.8823 2.1753 34 1 0.5181 -3.8512 1.7367 35 1 1.6545 -4.6609 -0.3823 36 1 3.1618 -3.6926 0.0552 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435961163.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:40 Heat of formation + Delta-G solvation = -52.811439 kcal Electronic energy + Delta-G solvation = -23439.601162 eV Core-core repulsion = 19757.436853 eV Total energy + Delta-G solvation = -3682.164309 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.054 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.32834 -37.39956 -37.09376 -36.33667 -36.03008 -33.44503 -33.23590 -32.28568 -30.34269 -26.36063 -25.57661 -24.64097 -21.89434 -21.29172 -19.77160 -19.41526 -19.05871 -18.75612 -17.64269 -17.01643 -16.85634 -16.19675 -15.72210 -15.21132 -14.95816 -14.78362 -14.41955 -13.96483 -13.46514 -13.24704 -13.02215 -12.83160 -12.51477 -12.38272 -12.27866 -12.16878 -11.84121 -11.66569 -11.53334 -11.30853 -11.15062 -10.84339 -10.75580 -10.61041 -10.34190 -9.83339 -9.65653 -9.28444 -9.06358 -8.94366 -8.60687 -8.38698 -7.95095 -6.08429 -4.29601 0.09832 0.36846 1.16901 1.60299 1.75395 2.91367 3.13421 3.22455 3.23503 3.38645 3.84362 4.00888 4.20622 4.56862 4.73256 4.86249 5.16096 5.31973 5.38521 5.57203 5.66982 5.72533 5.91948 6.03602 6.21611 6.43929 6.52349 6.61615 6.74485 6.81322 6.99776 7.17264 7.45658 7.53111 7.87976 8.20622 8.41965 8.71903 9.02006 9.34291 10.80343 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.017319 B = 0.003464 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.291222 B = 8081.833231 C = 8595.748781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.075 3.925 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.500 4.500 8 H 0.060 0.940 9 C 0.035 3.965 10 C 0.164 3.836 11 N -0.671 5.671 12 C 0.563 3.437 13 O -0.550 6.550 14 C -0.161 4.161 15 C -0.176 4.176 16 S 0.285 5.715 17 C -0.824 4.824 18 S 2.733 3.267 19 N -1.250 6.250 20 O -0.960 6.960 21 O -0.955 6.955 22 C 0.069 3.931 23 C -0.197 4.197 24 C -0.213 4.213 25 H 0.264 0.736 26 H 0.021 0.979 27 H 0.120 0.880 28 H 0.395 0.605 29 H 0.183 0.817 30 H 0.419 0.581 31 H 0.420 0.580 32 H 0.170 0.830 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.600 1.459 -14.459 14.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.130 4.130 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.035 3.965 10 C 0.041 3.959 11 N -0.317 5.317 12 C 0.347 3.653 13 O -0.431 6.431 14 C -0.179 4.179 15 C -0.316 4.316 16 S 0.552 5.448 17 C -1.025 5.025 18 S 2.818 3.182 19 N -0.925 5.925 20 O -0.950 6.950 21 O -0.944 6.944 22 C 0.033 3.967 23 C -0.236 4.236 24 C -0.250 4.250 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.138 0.862 28 H 0.230 0.770 29 H 0.201 0.799 30 H 0.246 0.754 31 H 0.251 0.749 32 H 0.187 0.813 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.854 0.843 -15.793 15.839 hybrid contribution 0.540 1.317 1.901 2.375 sum -0.313 2.159 -13.892 14.062 Atomic orbital electron populations 1.69839 1.05653 1.26947 1.47633 1.25007 0.94848 0.99079 0.94080 0.86634 0.79548 0.82924 0.78761 1.20300 1.21181 1.20075 1.20458 0.92700 0.88550 1.52060 0.92152 1.19231 0.92794 0.89923 0.94588 1.21144 0.98404 0.96823 0.79531 1.45483 1.07935 1.66400 1.11903 1.17299 0.85489 0.78516 0.84042 1.90748 1.24065 1.52566 1.75704 1.20835 0.91640 1.08666 0.96769 1.26308 1.02947 1.01464 1.00855 1.82876 0.95220 1.64064 1.02613 1.35237 1.14977 1.32160 1.20097 1.00729 0.73117 0.72181 0.72163 1.53026 1.65624 1.27618 1.46242 1.93610 1.74607 1.82019 1.44742 1.93625 1.39933 1.77194 1.83687 1.21118 1.01038 0.85937 0.88563 1.22944 1.01715 1.06471 0.92482 1.22968 0.98432 0.99976 1.03636 0.92498 0.96136 0.86213 0.77033 0.79947 0.75366 0.74909 0.81263 0.90168 0.91391 0.91327 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.23 10.11 55.43 0.56 -21.67 16 2 C 0.07 1.83 5.31 -17.82 -0.09 1.74 16 3 Si 0.89 19.33 29.54 -169.99 -5.02 14.31 16 4 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.50 -12.11 8.43 -34.44 -0.29 -12.40 16 8 H 0.06 1.46 7.82 -52.49 -0.41 1.05 16 9 C 0.04 0.79 2.04 -155.66 -0.32 0.48 16 10 C 0.16 3.71 4.62 -4.04 -0.02 3.69 16 11 N -0.67 -13.63 4.99 -61.46 -0.31 -13.94 16 12 C 0.56 11.39 7.78 -12.62 -0.10 11.29 16 13 O -0.55 -13.02 16.78 5.25 0.09 -12.93 16 14 C -0.16 -2.57 5.98 -104.63 -0.63 -3.20 16 15 C -0.18 -2.24 10.37 29.93 0.31 -1.93 16 16 S 0.28 3.04 22.86 -107.50 -2.46 0.59 16 17 C -0.82 -9.82 6.48 28.86 0.19 -9.63 16 18 S 2.73 29.32 6.42 -107.50 -0.69 28.63 16 19 N -1.25 -8.37 9.55 60.35 0.58 -7.80 16 20 O -0.96 -12.42 17.88 -57.17 -1.02 -13.45 16 21 O -0.96 -13.41 17.77 -57.17 -1.02 -14.43 16 22 C 0.07 0.98 9.73 -39.02 -0.38 0.60 16 23 C -0.20 -4.15 9.96 -26.69 -0.27 -4.41 16 24 C -0.21 -4.20 9.92 -26.69 -0.26 -4.47 16 25 H 0.26 6.72 8.32 -40.82 -0.34 6.38 16 26 H 0.02 0.46 8.09 -51.93 -0.42 0.04 16 27 H 0.12 3.13 5.89 -51.93 -0.31 2.83 16 28 H 0.40 7.37 6.67 -40.82 -0.27 7.10 16 29 H 0.18 2.00 7.06 -52.49 -0.37 1.63 16 30 H 0.42 2.08 8.92 -34.47 -0.31 1.77 16 31 H 0.42 1.95 8.96 -34.47 -0.31 1.64 16 32 H 0.17 2.39 8.05 -52.49 -0.42 1.97 16 33 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 340.18 15.07 5.13 5.13 Total: -1.00 -32.64 340.18 -9.66 -42.31 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -3.64 Total: 11.51 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -1.86 Total: -18.24 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.83 Total: -43.41 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -1.95 Total: -40.81 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Atomic # 16 Polarization: 32.36 SS G_CDS: -3.15 Total: 29.22 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.64 -9.66 -42.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435961163.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.506 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds