Wall clock time and date at job start Tue Mar 31 2020 05:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99883 * 2 1 4 4 H 1.48501 * 109.47284 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47282 * 300.00349 * 3 2 1 6 6 H 1.48504 * 109.47030 * 60.00076 * 3 2 1 7 7 C 1.37882 * 120.00359 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99803 * 175.13910 * 7 2 1 9 9 C 1.50700 * 119.99740 * 355.41858 * 7 2 1 10 10 C 1.52997 * 115.54877 * 274.92352 * 9 7 2 11 11 N 1.46499 * 109.47330 * 294.81737 * 10 9 7 12 12 C 1.34774 * 120.00448 * 184.78227 * 11 10 9 13 13 O 1.21708 * 119.99542 * 5.03651 * 12 11 10 14 14 C 1.46572 * 120.00055 * 185.04087 * 12 11 10 15 15 C 1.36655 * 125.45748 * 184.81544 * 14 12 11 16 16 C 1.37470 * 113.29605 * 179.83769 * 15 14 12 17 17 C 1.33823 * 115.10289 * 0.45375 * 16 15 14 18 18 S 1.76199 * 124.52282 * 179.72419 * 17 16 15 19 19 N 1.65601 * 107.21468 * 89.99970 * 18 17 16 20 20 O 1.42096 * 106.39983 * 203.54039 * 18 17 16 21 21 O 1.42098 * 106.40214 * 336.46701 * 18 17 16 22 22 S 1.70615 * 110.95260 * 359.75076 * 17 16 15 23 23 C 1.53000 * 117.49579 * 129.25057 * 9 7 2 24 24 C 1.53002 * 117.49755 * 60.59225 * 9 7 2 25 25 H 0.96991 * 120.00103 * 4.99654 * 1 2 3 26 26 H 1.08997 * 109.47099 * 54.82048 * 10 9 7 27 27 H 1.09000 * 109.46723 * 174.82098 * 10 9 7 28 28 H 0.97005 * 119.99150 * 4.77951 * 11 10 9 29 29 H 1.08003 * 123.35001 * 0.02562 * 15 14 12 30 30 H 1.07999 * 122.44978 * 180.22565 * 16 15 14 31 31 H 0.97006 * 119.99529 * 149.99443 * 19 18 17 32 32 H 0.96996 * 120.00474 * 330.00206 * 19 18 17 33 33 H 1.08997 * 117.50275 * 0.02562 * 23 9 7 34 34 H 1.09006 * 117.49200 * 145.02426 * 23 9 7 35 35 H 1.09004 * 117.50049 * 214.97647 * 24 9 7 36 36 H 1.09002 * 117.50024 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0817 -1.1957 -0.0787 9 6 1.2548 -2.4970 0.1054 10 6 0.9191 -2.9527 1.5268 11 7 2.1583 -3.2462 2.2510 12 6 2.1059 -3.7586 3.4964 13 8 1.0333 -4.0630 3.9845 14 6 3.3405 -3.9490 4.2631 15 6 3.4275 -4.5419 5.4913 16 6 4.7110 -4.5923 5.9810 17 6 5.6430 -4.0513 5.1876 18 16 7.3607 -3.9751 5.5729 19 7 8.0574 -5.3560 4.9813 20 8 7.8948 -2.8992 4.8139 21 8 7.4581 -4.0514 6.9885 22 16 4.9460 -3.4445 3.7534 23 6 1.5731 -3.5803 -0.9272 24 6 0.2453 -2.8218 -0.9975 25 1 -0.4850 0.8368 -0.0732 26 1 0.3753 -2.1616 2.0430 27 1 0.3018 -3.8500 1.4844 28 1 3.0166 -3.0719 1.8339 29 1 2.5733 -4.9347 6.0229 30 1 4.9493 -5.0328 6.9378 31 1 8.9825 -5.3459 4.6896 32 1 7.5405 -6.1749 4.9264 33 1 2.3251 -3.3507 -1.6820 34 1 1.5429 -4.6177 -0.5938 35 1 -0.6578 -3.3606 -0.7105 36 1 0.1232 -2.0929 -1.7987 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435962298.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:05 Heat of formation + Delta-G solvation = -56.942203 kcal Electronic energy + Delta-G solvation = -23062.113476 eV Core-core repulsion = 19379.770044 eV Total energy + Delta-G solvation = -3682.343432 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.054 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.56407 -37.89536 -37.35418 -36.70772 -36.15331 -33.62045 -33.57753 -32.04892 -30.48116 -27.00203 -25.62785 -24.66898 -21.51126 -21.03775 -20.71587 -19.78869 -19.39285 -18.70182 -17.75173 -17.28569 -16.66204 -16.19136 -15.92385 -15.45360 -15.06781 -14.96605 -14.66830 -14.24841 -13.77099 -13.43980 -13.16013 -12.82659 -12.76676 -12.51738 -12.38963 -12.30365 -11.99780 -11.82577 -11.66112 -11.21060 -11.05654 -11.03430 -10.88937 -10.57372 -10.33613 -9.97156 -9.57898 -9.54425 -9.15748 -8.89121 -8.60947 -8.47305 -8.26553 -6.15732 -4.26534 -0.19561 0.10853 1.10408 1.47274 1.95315 2.82062 3.21010 3.27226 3.31087 3.31251 3.33082 3.44433 4.29328 4.38851 4.83621 4.92004 5.05393 5.12076 5.25511 5.43822 5.59367 5.71389 5.91103 5.97050 6.21463 6.33981 6.40024 6.59169 6.64190 6.67948 6.97922 7.02403 7.25171 7.43126 7.73145 7.90537 8.23168 8.42243 8.75689 9.41976 10.91230 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.015270 B = 0.003451 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.192729 B = 8111.217441 C = 8982.586011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.075 3.925 3 Si 0.889 3.111 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.020 3.980 10 C 0.161 3.839 11 N -0.692 5.692 12 C 0.569 3.431 13 O -0.533 6.533 14 C -0.201 4.201 15 C -0.101 4.101 16 C -0.006 4.006 17 C -0.838 4.838 18 S 2.732 3.268 19 N -1.247 6.247 20 O -0.955 6.955 21 O -0.953 6.953 22 S 0.340 5.660 23 C -0.211 4.211 24 C -0.139 4.139 25 H 0.262 0.738 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.400 0.600 29 H 0.163 0.837 30 H 0.159 0.841 31 H 0.422 0.578 32 H 0.418 0.582 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.056 -12.012 8.330 19.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.542 4.542 8 H 0.080 0.920 9 C 0.019 3.981 10 C 0.039 3.961 11 N -0.341 5.341 12 C 0.353 3.647 13 O -0.412 6.412 14 C -0.325 4.325 15 C -0.134 4.134 16 C -0.043 4.043 17 C -1.041 5.041 18 S 2.815 3.185 19 N -0.921 5.921 20 O -0.945 6.945 21 O -0.942 6.942 22 S 0.612 5.388 23 C -0.248 4.248 24 C -0.177 4.177 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.234 0.766 29 H 0.180 0.820 30 H 0.177 0.823 31 H 0.253 0.747 32 H 0.246 0.754 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.024 -10.437 7.886 18.459 hybrid contribution -0.313 -0.300 0.653 0.784 sum 12.711 -10.737 8.539 18.702 Atomic orbital electron populations 1.69988 1.05907 1.26943 1.48049 1.24990 0.94831 0.99048 0.94108 0.86593 0.80335 0.83714 0.77766 1.19491 1.20917 1.20852 1.20391 0.92735 0.88473 1.52551 0.92016 1.19052 0.99829 0.93548 0.85670 1.21161 0.83289 0.98412 0.93249 1.45990 1.11982 1.61781 1.14324 1.16980 0.86701 0.79111 0.81956 1.90823 1.28987 1.51431 1.69958 1.25716 0.99138 1.06371 1.01274 1.20933 0.98400 1.00032 0.94031 1.19794 0.90844 0.94606 0.99095 1.35086 1.30319 1.25316 1.13402 1.00840 0.71381 0.72447 0.73810 1.53108 1.24763 1.28579 1.85691 1.93635 1.76973 1.51876 1.71974 1.93615 1.85089 1.85960 1.29582 1.83292 0.94856 1.49431 1.11239 1.23040 1.00863 0.95493 1.05420 1.22469 0.90751 1.01230 1.03226 0.92805 0.90854 0.93448 0.76552 0.81952 0.82331 0.74726 0.75430 0.90203 0.91687 0.91728 0.89362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.48 12.65 55.43 0.70 -22.78 16 2 C 0.07 1.93 5.43 -17.82 -0.10 1.83 16 3 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.50 -12.49 8.59 -34.44 -0.30 -12.79 16 8 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.02 0.44 1.47 -155.66 -0.23 0.21 16 10 C 0.16 3.46 5.53 -4.04 -0.02 3.44 16 11 N -0.69 -12.87 5.47 -61.66 -0.34 -13.21 16 12 C 0.57 10.24 7.77 -12.90 -0.10 10.13 16 13 O -0.53 -11.14 16.83 5.18 0.09 -11.05 16 14 C -0.20 -2.87 6.45 -36.79 -0.24 -3.11 16 15 C -0.10 -1.22 10.01 -40.43 -0.40 -1.62 16 16 C -0.01 -0.06 9.77 -41.41 -0.40 -0.46 16 17 C -0.84 -8.81 6.35 29.18 0.19 -8.63 16 18 S 2.73 26.05 6.41 -107.50 -0.69 25.36 16 19 N -1.25 -6.39 9.52 60.35 0.57 -5.81 16 20 O -0.95 -12.23 17.82 -57.17 -1.02 -13.25 16 21 O -0.95 -11.58 17.74 -57.17 -1.01 -12.60 16 22 S 0.34 4.17 21.95 -107.50 -2.36 1.81 16 23 C -0.21 -4.18 9.96 -26.69 -0.27 -4.45 16 24 C -0.14 -3.04 9.14 -26.69 -0.24 -3.29 16 25 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 26 H 0.07 1.79 8.14 -51.93 -0.42 1.36 16 27 H 0.05 1.00 8.05 -51.93 -0.42 0.58 16 28 H 0.40 6.82 7.49 -40.82 -0.31 6.52 16 29 H 0.16 1.79 8.06 -52.48 -0.42 1.37 16 30 H 0.16 1.16 8.02 -52.49 -0.42 0.74 16 31 H 0.42 1.44 8.96 -34.47 -0.31 1.13 16 32 H 0.42 1.20 8.96 -34.47 -0.31 0.89 16 33 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 346.13 15.07 5.22 5.22 Total: -1.00 -33.24 346.13 -9.82 -43.07 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -3.84 Total: 6.84 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -2.12 Total: -18.72 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.94 Total: -41.80 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -1.95 Total: -36.90 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 30.21 SS G_CDS: -3.05 Total: 27.16 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.24 -9.82 -43.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435962298.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.875 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds