Wall clock time and date at job start Tue Mar 31 2020 06:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.53001 * 109.46892 * 85.00151 * 3 2 1 5 5 N 1.46501 * 109.46892 * 180.02562 * 4 3 2 6 6 C 1.34775 * 119.99970 * 180.02562 * 5 4 3 7 7 O 1.21691 * 119.99819 * 0.02562 * 6 5 4 8 8 C 1.46376 * 119.99953 * 179.97438 * 6 5 4 9 9 H 1.08000 * 119.99861 * 0.02562 * 8 6 5 10 10 C 1.40050 * 119.99929 * 180.02562 * 8 6 5 11 11 N 1.30673 * 119.99666 * 359.97438 * 10 8 6 12 12 Si 1.86793 * 119.99946 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47077 * 89.99826 * 12 10 8 14 14 H 1.48501 * 109.47222 * 209.99429 * 12 10 8 15 15 H 1.48500 * 109.47256 * 330.00004 * 12 10 8 16 16 S 1.65599 * 119.99791 * 180.02562 * 2 1 3 17 17 O 1.42099 * 106.40401 * 203.53818 * 16 2 1 18 18 O 1.42103 * 106.40122 * 336.45794 * 16 2 1 19 19 C 1.76205 * 107.21913 * 89.99801 * 16 2 1 20 20 C 1.38246 * 119.97286 * 269.72470 * 19 16 2 21 21 C 1.38199 * 120.02088 * 179.72340 * 20 19 16 22 22 C 1.38454 * 119.97572 * 0.57118 * 21 20 19 23 23 F 1.35103 * 120.02562 * 179.67919 * 22 21 20 24 24 C 1.38460 * 119.94838 * 359.70850 * 22 21 20 25 25 C 1.38193 * 119.97402 * 359.97438 * 24 22 21 26 26 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 27 27 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 28 28 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 29 29 H 1.09001 * 109.47135 * 205.00098 * 3 2 1 30 30 H 1.09001 * 109.46893 * 325.00392 * 3 2 1 31 31 H 1.09001 * 109.47188 * 299.99915 * 4 3 2 32 32 H 1.08997 * 109.47202 * 59.99921 * 4 3 2 33 33 H 0.97003 * 119.99685 * 359.97438 * 5 4 3 34 34 H 0.97000 * 119.99550 * 179.97438 * 11 10 8 35 35 H 1.08003 * 119.98911 * 359.97438 * 20 19 16 36 36 H 1.08003 * 120.00813 * 180.25164 * 21 20 19 37 37 H 1.07999 * 120.01202 * 179.97438 * 24 22 21 38 38 H 1.08001 * 119.98965 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3437 1.7732 1.4370 5 7 3.0757 3.0422 1.4370 6 6 3.3249 3.6765 2.5998 7 8 2.9423 3.1947 3.6497 8 6 4.0568 4.9441 2.5998 9 1 4.3967 5.3714 1.6679 10 6 4.3163 5.6029 3.8081 11 7 3.9045 5.0861 4.9355 12 14 5.2508 7.2202 3.8082 13 1 4.2907 8.3467 3.6870 14 1 6.0114 7.3524 5.0768 15 1 6.1932 7.2475 2.6608 16 16 2.2930 -1.4342 -0.0006 17 8 3.5760 -1.1571 0.5439 18 8 1.4113 -2.4067 0.5434 19 6 2.5537 -1.8852 -1.6839 20 6 1.6216 -2.6655 -2.3422 21 6 1.8223 -3.0150 -3.6641 22 6 2.9631 -2.5934 -4.3256 23 9 3.1635 -2.9399 -5.6160 24 6 3.8989 -1.8167 -3.6635 25 6 3.6929 -1.4629 -2.3436 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5139 29 1 3.1859 1.1177 -0.4343 30 1 1.6502 2.0043 -0.5894 31 1 1.3555 1.9242 1.8714 32 1 2.8910 1.0376 2.0264 33 1 3.3816 3.4256 0.6001 34 1 4.0846 5.5422 5.7724 35 1 0.7342 -2.9986 -1.8245 36 1 1.0919 -3.6212 -4.1794 37 1 4.7893 -1.4876 -4.1784 38 1 4.4224 -0.8568 -1.8270 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000437463696.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:56 Heat of formation + Delta-G solvation = -122.993377 kcal Electronic energy + Delta-G solvation = -25441.008273 eV Core-core repulsion = 21325.420565 eV Total energy + Delta-G solvation = -4115.587707 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -49.54280 -39.40134 -37.70643 -37.37148 -36.37309 -35.94537 -33.18177 -32.22753 -31.75158 -31.25226 -29.01638 -26.56226 -25.32080 -23.69379 -23.57571 -22.31322 -19.76336 -19.35831 -18.47040 -17.94756 -17.39680 -17.21247 -16.98881 -16.19366 -15.99563 -15.27727 -15.21104 -14.89467 -14.44972 -14.27084 -14.15751 -13.89655 -13.82092 -13.64286 -13.57440 -13.16727 -12.91189 -12.42225 -12.31346 -12.19261 -11.91155 -11.72895 -11.68188 -11.64307 -11.26032 -11.11094 -11.07358 -10.63236 -10.44814 -10.21533 -9.72362 -9.66414 -9.22692 -8.83312 -7.60300 -7.50565 -6.16540 -4.62144 0.00597 0.30806 0.64244 2.58467 2.95935 3.15540 3.22292 3.25828 3.55984 3.62536 3.93229 4.12068 4.23734 4.30248 4.50650 4.61598 4.64736 4.78325 4.98304 5.10515 5.16298 5.27701 5.30391 5.42947 5.45317 5.53044 5.54213 5.58532 5.68773 5.74654 5.85815 6.22429 6.29289 6.50754 6.63213 7.45292 7.93280 8.08715 8.33440 9.04313 9.54319 10.62410 10.80834 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.020936 B = 0.002612 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.061465 B =10718.829114 C =11477.960544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.994 5.994 3 C 0.115 3.885 4 C 0.113 3.887 5 N -0.766 5.766 6 C 0.555 3.445 7 O -0.579 6.579 8 C -0.545 4.545 9 H 0.068 0.932 10 C 0.086 3.914 11 N -0.768 5.768 12 Si 0.909 3.091 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.265 1.265 16 S 2.690 3.310 17 O -0.939 6.939 18 O -0.952 6.952 19 C -0.691 4.691 20 C 0.008 3.992 21 C -0.177 4.177 22 C 0.152 3.848 23 F -0.131 7.131 24 C -0.174 4.174 25 C 0.011 3.989 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.380 0.620 34 H 0.268 0.732 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.244 -13.639 -20.215 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.833 5.833 3 C -0.011 4.011 4 C -0.014 4.014 5 N -0.423 5.423 6 C 0.359 3.641 7 O -0.461 6.461 8 C -0.582 4.582 9 H 0.086 0.914 10 C -0.133 4.133 11 N -0.397 5.397 12 Si 0.734 3.266 13 H -0.198 1.198 14 H -0.205 1.205 15 H -0.189 1.189 16 S 2.779 3.221 17 O -0.929 6.929 18 O -0.942 6.942 19 C -0.776 4.776 20 C -0.011 4.011 21 C -0.196 4.196 22 C 0.132 3.868 23 F -0.110 7.110 24 C -0.194 4.194 25 C -0.008 4.008 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.211 0.789 34 H 0.079 0.921 35 H 0.168 0.832 36 H 0.163 0.837 37 H 0.165 0.835 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.295 -14.473 -18.565 24.128 hybrid contribution 0.581 0.939 -1.562 1.913 sum -4.714 -13.534 -20.127 24.708 Atomic orbital electron populations 1.21553 0.77762 1.02905 1.03072 1.57316 1.15487 1.21168 1.89340 1.21595 0.96300 0.84383 0.98803 1.21258 0.97391 0.88551 0.94160 1.46032 1.62899 1.23163 1.10175 1.18226 0.79723 0.84963 0.81194 1.90609 1.56129 1.68530 1.30868 1.20865 1.38000 1.05624 0.93711 0.91377 1.25719 0.94346 0.98217 0.95047 1.70026 1.35449 1.36023 0.98171 0.86362 0.79866 0.82108 0.78305 1.19808 1.20492 1.18923 1.02278 0.73601 0.72562 0.73690 1.93648 1.39810 1.84063 1.75407 1.93582 1.66161 1.58682 1.75816 1.31345 1.04263 1.13947 1.28056 1.20828 0.96805 0.90521 0.92955 1.21286 0.98079 1.04345 0.95913 1.18014 0.95000 0.95132 0.78645 1.91551 1.94943 1.89922 1.34549 1.21326 1.00706 1.01426 0.95937 1.20899 0.93977 0.92975 0.92949 0.91614 0.90508 0.91240 0.89797 0.89681 0.92837 0.92487 0.78894 0.92100 0.83178 0.83676 0.83525 0.82878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 10.33 59.85 0.62 1.44 16 2 N -0.99 -11.29 3.18 -121.75 -0.39 -11.68 16 3 C 0.11 1.45 5.48 -4.04 -0.02 1.43 16 4 C 0.11 2.14 6.00 -4.04 -0.02 2.12 16 5 N -0.77 -16.76 5.55 -61.72 -0.34 -17.10 16 6 C 0.56 15.86 7.75 -12.99 -0.10 15.76 16 7 O -0.58 -19.06 15.02 5.20 0.08 -18.98 16 8 C -0.54 -15.32 9.54 -35.63 -0.34 -15.66 16 9 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 10 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 11 N -0.77 -23.23 11.83 55.55 0.66 -22.57 16 12 Si 0.91 20.08 29.56 -169.99 -5.02 15.05 16 13 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 14 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 16 S 2.69 33.46 5.60 -107.50 -0.60 32.86 16 17 O -0.94 -14.92 16.25 -57.17 -0.93 -15.85 16 18 O -0.95 -13.48 16.35 -57.17 -0.93 -14.41 16 19 C -0.69 -6.74 5.97 -39.58 -0.24 -6.98 16 20 C 0.01 0.07 9.52 -39.59 -0.38 -0.31 16 21 C -0.18 -1.32 10.03 -39.52 -0.40 -1.72 16 22 C 0.15 1.27 7.30 -39.42 -0.29 0.98 16 23 F -0.13 -1.14 17.27 2.25 0.04 -1.10 16 24 C -0.17 -1.40 10.03 -39.52 -0.40 -1.80 16 25 C 0.01 0.10 9.52 -39.60 -0.38 -0.28 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.55 7.94 -51.93 -0.41 0.13 16 28 H 0.07 0.47 7.79 -51.93 -0.40 0.06 16 29 H 0.08 0.95 7.61 -51.93 -0.40 0.56 16 30 H 0.08 0.87 7.96 -51.93 -0.41 0.46 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.38 6.94 8.45 -40.82 -0.35 6.59 16 34 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 35 H 0.15 0.97 7.61 -52.48 -0.40 0.57 16 36 H 0.15 0.74 8.06 -52.48 -0.42 0.31 16 37 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 38 H 0.15 1.24 7.62 -52.49 -0.40 0.84 16 LS Contribution 350.55 15.07 5.28 5.28 Total: -1.00 -38.98 350.55 -8.63 -47.61 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -4.43 Total: 3.57 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.03 Total: -2.69 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.07 Total: -51.35 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: -1.79 Total: -49.24 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 33.46 SS G_CDS: -0.60 Total: 32.86 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -38.98 -8.63 -47.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437463696.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.384 kcal (2) G-P(sol) polarization free energy of solvation -38.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds