Wall clock time and date at job start Tue Mar 31 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38374 * 119.85915 * 2 1 4 4 C 1.37934 * 120.14667 * 180.23313 * 3 2 1 5 5 C 1.39590 * 119.85294 * 359.51544 * 4 3 2 6 6 C 1.47844 * 120.14501 * 180.23042 * 5 4 3 7 7 O 1.21558 * 120.00163 * 179.97438 * 6 5 4 8 8 N 1.34778 * 120.00104 * 359.97438 * 6 5 4 9 9 C 1.46505 * 120.00199 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47063 * 180.02562 * 9 8 6 11 11 F 1.39896 * 109.47098 * 180.02562 * 10 9 8 12 12 C 1.39554 * 119.71076 * 0.24988 * 5 4 3 13 13 C 1.37978 * 119.85583 * 0.02562 * 12 5 4 14 14 S 1.76195 * 119.93039 * 179.97438 * 13 12 5 15 15 O 1.42105 * 106.40127 * 358.33820 * 14 13 12 16 16 O 1.42096 * 106.40504 * 131.25764 * 14 13 12 17 17 N 1.65605 * 107.21657 * 244.80090 * 14 13 12 18 18 C 1.36935 * 120.00245 * 64.52709 * 17 14 13 19 19 H 1.08005 * 119.99815 * 5.03782 * 18 17 14 20 20 C 1.38809 * 119.99907 * 185.04500 * 18 17 14 21 21 N 1.31620 * 120.00248 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99777 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47478 * 89.99583 * 22 20 18 24 24 H 1.48498 * 109.47019 * 209.99487 * 22 20 18 25 25 H 1.48498 * 109.47326 * 329.99828 * 22 20 18 26 26 H 1.09005 * 109.46991 * 264.49491 * 1 2 3 27 27 H 1.09002 * 109.46910 * 24.48869 * 1 2 3 28 28 H 1.08998 * 109.47369 * 144.49641 * 1 2 3 29 29 H 1.08004 * 119.92805 * 0.02562 * 3 2 1 30 30 H 1.08005 * 120.07275 * 179.78882 * 4 3 2 31 31 H 0.96997 * 119.99780 * 0.02562 * 8 6 5 32 32 H 1.09002 * 109.46977 * 299.99843 * 9 8 6 33 33 H 1.09003 * 109.46723 * 60.00021 * 9 8 6 34 34 H 1.09002 * 109.46918 * 299.99662 * 10 9 8 35 35 H 1.08994 * 109.47179 * 59.99508 * 10 9 8 36 36 H 1.08006 * 120.07070 * 179.97438 * 12 5 4 37 37 H 0.97002 * 119.99468 * 244.52465 * 17 14 13 38 38 H 0.96998 * 119.99639 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2001 0.0000 4 6 3.5752 1.2070 -0.0049 5 6 4.2762 -0.0002 0.0005 6 6 5.7546 -0.0002 0.0005 7 8 6.3624 -1.0530 0.0056 8 7 6.4286 1.1669 -0.0052 9 6 7.8936 1.1668 -0.0047 10 6 8.4037 2.6093 -0.0112 11 9 9.8027 2.6093 -0.0112 12 6 3.5753 -1.2069 0.0054 13 6 2.1955 -1.1999 0.0044 14 16 1.3087 -2.7224 0.0099 15 8 2.2842 -3.7551 -0.0248 16 8 0.3292 -2.6125 1.0336 17 7 0.4809 -2.8126 -1.4216 18 6 1.1658 -2.8866 -2.6050 19 1 2.2428 -2.9682 -2.6015 20 6 0.4760 -2.8567 -3.8092 21 7 -0.8365 -2.7576 -3.8135 22 14 1.4103 -2.9569 -5.4236 23 1 1.5527 -4.3793 -5.8258 24 1 0.6646 -2.2179 -6.4738 25 1 2.7566 -2.3533 -5.2547 26 1 -0.3633 -0.0986 1.0230 27 1 -0.3633 0.9352 -0.4260 28 1 -0.3634 -0.8366 -0.5968 29 1 1.6524 2.1334 0.0004 30 1 4.1117 2.1444 -0.0083 31 1 5.9436 2.0069 -0.0089 32 1 8.2566 0.6575 0.8881 33 1 8.2572 0.6485 -0.8919 34 1 8.0407 3.1190 -0.9037 35 1 8.0400 3.1273 0.8762 36 1 4.1118 -2.1443 0.0091 37 1 -0.4891 -2.8131 -1.4217 38 1 -1.3185 -2.7363 -4.6550 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000437684573.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:40 Heat of formation + Delta-G solvation = -137.917119 kcal Electronic energy + Delta-G solvation = -25908.943191 eV Core-core repulsion = 21792.708342 eV Total energy + Delta-G solvation = -4116.234849 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.10258 -40.22668 -38.45623 -36.15008 -35.40792 -34.79729 -34.72936 -32.86708 -31.09988 -31.04369 -29.99146 -27.15864 -24.60939 -23.70367 -22.92658 -22.22659 -20.64736 -18.82579 -18.27897 -17.89112 -16.93690 -16.87328 -16.55760 -15.77691 -15.71722 -15.43959 -15.12301 -14.99107 -14.68016 -14.59422 -14.14031 -13.85411 -13.69390 -13.56664 -13.36726 -13.19937 -12.22382 -12.01827 -11.83749 -11.80345 -11.64762 -11.40644 -11.37675 -11.33087 -11.13167 -11.00508 -10.87325 -10.63716 -10.39781 -10.17701 -10.00751 -9.81171 -9.43771 -9.10577 -8.60665 -8.37055 -6.59268 -3.99500 0.82554 1.27538 1.54761 2.77044 2.78603 3.14351 3.19394 3.22505 3.77364 4.00780 4.05847 4.29291 4.40237 4.47101 4.60619 4.69037 4.76349 4.88438 4.95102 5.03084 5.14944 5.26197 5.35120 5.48217 5.61309 5.76171 5.83994 5.96339 5.99815 6.06024 6.25543 6.29453 6.40793 6.57013 6.96451 6.99161 7.20691 7.37900 8.05344 8.56767 8.67538 9.12885 10.55680 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.012861 B = 0.003675 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.536196 B = 7618.016534 C = 8519.204704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 C -0.155 4.155 4 C -0.048 4.048 5 C -0.176 4.176 6 C 0.567 3.433 7 O -0.527 6.527 8 N -0.733 5.733 9 C 0.088 3.912 10 C 0.055 3.945 11 F -0.207 7.207 12 C 0.039 3.961 13 C -0.666 4.666 14 S 2.599 3.401 15 O -0.971 6.971 16 O -0.999 6.999 17 N -0.943 5.943 18 C -0.266 4.266 19 H 0.106 0.894 20 C 0.033 3.967 21 N -0.871 5.871 22 Si 0.922 3.078 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.267 1.267 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.123 0.877 31 H 0.400 0.600 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.150 0.850 37 H 0.412 0.588 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.169 14.140 4.669 16.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.049 3.951 3 C -0.174 4.174 4 C -0.067 4.067 5 C -0.180 4.180 6 C 0.356 3.644 7 O -0.404 6.404 8 N -0.387 5.387 9 C -0.037 4.037 10 C -0.001 4.001 11 F -0.188 7.188 12 C 0.019 3.981 13 C -0.745 4.745 14 S 2.690 3.310 15 O -0.961 6.961 16 O -0.988 6.988 17 N -0.695 5.695 18 C -0.408 4.408 19 H 0.124 0.876 20 C -0.175 4.175 21 N -0.512 5.512 22 Si 0.749 3.251 23 H -0.199 1.199 24 H -0.206 1.206 25 H -0.192 1.192 26 H 0.112 0.888 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.149 0.851 30 H 0.141 0.859 31 H 0.236 0.764 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.168 0.832 37 H 0.248 0.752 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.786 12.841 5.424 16.477 hybrid contribution 0.125 1.353 -1.211 1.820 sum 8.910 14.194 4.214 17.280 Atomic orbital electron populations 1.21301 0.90208 1.04526 1.04306 1.19756 0.96198 0.91722 0.87389 1.21038 0.93840 0.97961 1.04530 1.21272 0.94648 0.96289 0.94528 1.19799 0.91889 0.95002 1.11326 1.18292 0.87331 0.83246 0.75576 1.90809 1.69828 1.30958 1.48773 1.45621 1.06374 1.09084 1.77647 1.21847 0.80660 0.96644 1.04531 1.22048 0.76353 0.97328 1.04322 1.92801 1.30261 1.97563 1.98212 1.21068 0.92233 0.98230 0.86580 1.32076 1.05718 1.23255 1.13452 1.07394 0.73220 0.75972 0.74394 1.93468 1.61607 1.53846 1.87171 1.93423 1.59501 1.87641 1.58215 1.51834 1.16916 1.79969 1.20741 1.19420 0.93143 1.45286 0.82993 0.87639 1.25301 0.95733 0.96908 0.99588 1.69686 1.06251 1.46798 1.28486 0.85977 0.79447 0.78882 0.80841 1.19881 1.20637 1.19184 0.88781 0.90608 0.89622 0.85116 0.85915 0.76418 0.90101 0.90024 0.89970 0.90021 0.83193 0.75200 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.59 36.01 0.31 -2.00 16 2 C 0.05 0.85 5.88 -104.53 -0.61 0.24 16 3 C -0.16 -2.08 9.66 -39.64 -0.38 -2.47 16 4 C -0.05 -0.60 9.54 -39.19 -0.37 -0.97 16 5 C -0.18 -2.76 5.87 -104.97 -0.62 -3.38 16 6 C 0.57 8.50 7.77 -12.33 -0.10 8.41 16 7 O -0.53 -9.98 16.35 5.31 0.09 -9.89 16 8 N -0.73 -7.28 5.51 -61.24 -0.34 -7.62 16 9 C 0.09 0.78 6.13 -4.04 -0.02 0.76 16 10 C 0.05 0.33 7.67 37.16 0.28 0.62 16 11 F -0.21 -1.86 17.36 2.25 0.04 -1.82 16 12 C 0.04 0.74 9.09 -39.19 -0.36 0.38 16 13 C -0.67 -12.96 5.81 -39.64 -0.23 -13.19 16 14 S 2.60 57.24 4.90 -107.50 -0.53 56.71 16 15 O -0.97 -23.99 16.65 -57.17 -0.95 -24.94 16 16 O -1.00 -22.66 16.46 -57.17 -0.94 -23.60 16 17 N -0.94 -21.75 4.54 31.50 0.14 -21.61 16 18 C -0.27 -6.53 9.64 -15.06 -0.15 -6.68 16 19 H 0.11 2.55 7.80 -52.48 -0.41 2.14 16 20 C 0.03 0.81 5.50 -17.43 -0.10 0.72 16 21 N -0.87 -21.81 13.06 55.49 0.72 -21.08 16 22 Si 0.92 19.20 29.55 -169.99 -5.02 14.18 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 26 H 0.09 1.41 7.99 -51.93 -0.42 0.99 16 27 H 0.07 0.96 8.05 -51.93 -0.42 0.55 16 28 H 0.09 1.53 5.41 -51.93 -0.28 1.25 16 29 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 30 H 0.12 0.93 6.41 -52.48 -0.34 0.60 16 31 H 0.40 2.60 6.51 -40.82 -0.27 2.34 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.15 3.04 6.92 -52.48 -0.36 2.67 16 37 H 0.41 9.44 7.65 -34.47 -0.26 9.18 16 38 H 0.28 6.52 8.31 -40.82 -0.34 6.18 16 LS Contribution 342.53 15.07 5.16 5.16 Total: -1.00 -32.47 342.53 -7.97 -40.44 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -4.00 Total: 11.64 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -2.34 Total: -17.57 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.53 Total: -50.31 kcal Atomic # 8 Polarization: -56.62 SS G_CDS: -1.81 Total: -58.43 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Atomic # 16 Polarization: 57.24 SS G_CDS: -0.53 Total: 56.71 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.47 -7.97 -40.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437684573.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.479 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds