Wall clock time and date at job start Tue Mar 31 2020 06:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99930 * 2 1 4 4 H 1.48501 * 109.46915 * 239.99678 * 3 2 1 5 5 H 1.48506 * 109.46921 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47393 * 119.99488 * 3 2 1 7 7 C 1.37872 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00266 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99959 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47214 * 179.97438 * 9 7 2 11 11 S 1.65597 * 120.00079 * 164.72113 * 10 9 7 12 12 O 1.42100 * 106.40448 * 178.54099 * 11 10 9 13 13 O 1.42103 * 106.40365 * 311.46606 * 11 10 9 14 14 C 1.76197 * 107.21750 * 65.00357 * 11 10 9 15 15 C 1.38365 * 119.85393 * 269.72851 * 14 11 10 16 16 C 1.37961 * 120.14426 * 179.72257 * 15 14 11 17 17 C 1.39574 * 119.85222 * 0.54886 * 16 15 14 18 18 C 1.47850 * 120.14471 * 179.70517 * 17 16 15 19 19 O 1.21551 * 119.99921 * 180.02562 * 18 17 16 20 20 N 1.34774 * 119.99867 * 0.02562 * 18 17 16 21 21 C 1.46501 * 120.00065 * 179.97438 * 20 18 17 22 22 C 1.52993 * 109.47021 * 179.97438 * 21 20 18 23 23 F 1.39905 * 109.47261 * 180.02562 * 22 21 20 24 24 C 1.39579 * 119.71384 * 359.72355 * 17 16 15 25 25 C 1.37963 * 119.84937 * 0.02562 * 24 17 16 26 26 H 0.97001 * 120.00013 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47652 * 59.99684 * 9 7 2 28 28 H 1.09000 * 109.47217 * 299.99790 * 9 7 2 29 29 H 0.97005 * 119.99811 * 345.00092 * 10 9 7 30 30 H 1.07997 * 119.92606 * 359.97438 * 15 14 11 31 31 H 1.07997 * 120.07149 * 180.24762 * 16 15 14 32 32 H 0.97001 * 120.00208 * 0.02562 * 20 18 17 33 33 H 1.08992 * 109.47251 * 300.00421 * 21 20 18 34 34 H 1.09006 * 109.46784 * 60.00183 * 21 20 18 35 35 H 1.08998 * 109.47673 * 299.99968 * 22 21 20 36 36 H 1.09000 * 109.47583 * 60.00371 * 22 21 20 37 37 H 1.07994 * 120.07623 * 179.97438 * 24 17 16 38 38 H 1.07996 * 119.92309 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 16 1.6896 -5.1410 0.3784 12 8 2.8247 -5.9872 0.2570 13 8 0.9309 -5.0252 1.5744 14 6 0.5614 -5.6383 -0.8803 15 6 -0.7896 -5.3758 -0.7373 16 6 -1.6775 -5.7575 -1.7217 17 6 -1.2118 -6.4199 -2.8586 18 6 -2.1585 -6.8376 -3.9146 19 8 -1.7501 -7.4147 -4.9034 20 7 -3.4743 -6.5784 -3.7809 21 6 -4.4124 -6.9918 -4.8275 22 6 -5.8319 -6.5810 -4.4313 23 9 -6.7278 -6.9762 -5.4305 24 6 0.1516 -6.6866 -2.9941 25 6 1.0295 -6.2950 -2.0046 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 3.1350 -3.4540 -0.2169 30 1 -1.1492 -4.8675 0.1451 31 1 -2.7312 -5.5485 -1.6107 32 1 -3.8002 -6.1175 -2.9920 33 1 -4.1433 -6.5101 -5.7675 34 1 -4.3681 -8.0742 -4.9482 35 1 -6.1008 -7.0630 -3.4915 36 1 -5.8766 -5.4986 -4.3103 37 1 0.5182 -7.1992 -3.8711 38 1 2.0846 -6.5011 -2.1080 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000437690237.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:47 Heat of formation + Delta-G solvation = -139.492670 kcal Electronic energy + Delta-G solvation = -25066.053698 eV Core-core repulsion = 20949.750528 eV Total energy + Delta-G solvation = -4116.303170 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.15758 -40.51636 -38.54075 -36.84388 -35.64415 -35.45889 -34.72252 -32.24266 -32.10020 -31.21880 -29.78040 -26.82453 -24.88776 -23.38235 -22.74434 -22.50489 -21.06977 -19.21814 -18.54564 -17.66272 -17.21923 -17.05836 -16.96420 -16.01272 -15.90567 -15.50069 -15.39092 -15.35449 -14.91074 -14.81251 -14.44909 -14.09785 -13.74965 -13.60427 -13.50278 -13.08645 -12.89445 -12.60621 -12.19665 -11.90186 -11.77089 -11.72369 -11.63722 -11.49141 -11.36845 -10.99001 -10.88380 -10.79270 -10.34020 -10.19323 -9.70657 -9.53552 -9.45384 -9.19450 -8.98595 -8.32575 -6.25315 -4.29899 0.22201 0.86348 1.17061 2.40354 2.54700 3.22593 3.27282 3.29106 3.40890 3.65642 3.94423 4.13354 4.22573 4.27365 4.28878 4.42353 4.48164 4.69068 4.79444 4.83616 5.11842 5.13043 5.13619 5.33573 5.38457 5.41917 5.78554 5.83960 5.87338 5.97318 6.01994 6.32732 6.60279 6.95148 7.17850 7.23802 7.69394 7.72554 7.73656 8.08753 8.73765 9.35500 10.84996 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.011167 B = 0.003074 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.856641 B = 9106.200284 C =10813.671894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.531 4.531 8 H 0.066 0.934 9 C 0.245 3.755 10 N -1.101 6.101 11 S 2.689 3.311 12 O -0.975 6.975 13 O -0.958 6.958 14 C -0.644 4.644 15 C -0.019 4.019 16 C -0.108 4.108 17 C -0.092 4.092 18 C 0.563 3.437 19 O -0.527 6.527 20 N -0.726 5.726 21 C 0.087 3.913 22 C 0.053 3.947 23 F -0.206 7.206 24 C -0.083 4.083 25 C -0.026 4.026 26 H 0.267 0.733 27 H 0.022 0.978 28 H 0.040 0.960 29 H 0.412 0.588 30 H 0.151 0.849 31 H 0.133 0.867 32 H 0.405 0.595 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.144 0.856 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.577 -12.185 -6.055 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.571 4.571 8 H 0.084 0.916 9 C 0.122 3.878 10 N -0.864 5.864 11 S 2.776 3.224 12 O -0.966 6.966 13 O -0.948 6.948 14 C -0.729 4.729 15 C -0.038 4.038 16 C -0.128 4.128 17 C -0.096 4.096 18 C 0.350 3.650 19 O -0.404 6.404 20 N -0.381 5.381 21 C -0.037 4.037 22 C -0.002 4.002 23 F -0.188 7.188 24 C -0.103 4.103 25 C -0.045 4.045 26 H 0.076 0.924 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.247 0.753 30 H 0.169 0.831 31 H 0.151 0.849 32 H 0.241 0.759 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.161 0.839 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.482 -13.029 -6.069 16.689 hybrid contribution 0.038 1.387 -0.497 1.474 sum -8.444 -11.642 -6.566 15.810 Atomic orbital electron populations 1.69915 1.06055 1.27529 1.49376 1.24958 0.94999 0.99471 0.94676 0.86464 0.79450 0.82149 0.78819 1.20068 1.21095 1.19974 1.21148 0.93482 0.89851 1.52583 0.91587 1.19112 0.87802 0.83532 0.97314 1.55442 1.19725 1.23613 1.87580 1.02008 0.73278 0.72983 0.74174 1.93541 1.49272 1.66598 1.87145 1.93578 1.72823 1.86319 1.42056 1.31560 1.11577 1.11917 1.17822 1.20987 0.91153 0.93324 0.98360 1.21346 1.00082 0.98062 0.93277 1.20084 0.94452 1.00294 0.94731 1.18282 0.81797 0.78671 0.86203 1.90797 1.77870 1.40976 1.30721 1.45647 1.06915 1.61420 1.24068 1.21886 0.87629 1.02022 0.92164 1.22060 0.86615 1.01838 0.89694 1.92807 1.69090 1.92877 1.63989 1.21337 0.91530 0.98202 0.99229 1.20944 1.00690 0.92214 0.90686 0.92377 0.96018 0.94240 0.75299 0.83108 0.84890 0.75888 0.89895 0.89976 0.89850 0.89699 0.83859 0.83459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.32 13.29 55.43 0.74 -23.58 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.53 -13.63 9.27 -34.44 -0.32 -13.95 16 8 H 0.07 1.62 7.65 -52.49 -0.40 1.22 16 9 C 0.25 5.69 5.98 -5.19 -0.03 5.66 16 10 N -1.10 -20.73 5.99 -11.65 -0.07 -20.80 16 11 S 2.69 46.17 5.74 -107.50 -0.62 45.55 16 12 O -0.98 -17.60 17.27 -57.17 -0.99 -18.58 16 13 O -0.96 -18.99 16.73 -57.17 -0.96 -19.94 16 14 C -0.64 -9.67 5.95 -39.49 -0.24 -9.91 16 15 C -0.02 -0.27 9.50 -39.64 -0.38 -0.64 16 16 C -0.11 -1.22 9.54 -39.18 -0.37 -1.60 16 17 C -0.09 -1.13 5.87 -104.97 -0.62 -1.75 16 18 C 0.56 6.68 7.77 -12.33 -0.10 6.58 16 19 O -0.53 -7.91 16.35 5.32 0.09 -7.82 16 20 N -0.73 -5.90 5.51 -61.25 -0.34 -6.24 16 21 C 0.09 0.64 6.13 -4.05 -0.02 0.61 16 22 C 0.05 0.28 7.67 37.15 0.28 0.56 16 23 F -0.21 -1.70 17.36 2.25 0.04 -1.66 16 24 C -0.08 -1.07 9.60 -39.18 -0.38 -1.45 16 25 C -0.03 -0.36 9.50 -39.64 -0.38 -0.73 16 26 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 29 H 0.41 7.08 8.54 -34.47 -0.29 6.79 16 30 H 0.15 2.02 7.60 -52.49 -0.40 1.62 16 31 H 0.13 0.98 6.41 -52.49 -0.34 0.64 16 32 H 0.40 2.18 6.51 -40.82 -0.27 1.91 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.14 1.67 7.65 -52.49 -0.40 1.27 16 38 H 0.15 1.75 7.60 -52.49 -0.40 1.35 16 LS Contribution 350.04 15.07 5.28 5.28 Total: -1.00 -34.02 350.04 -8.64 -42.66 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -4.15 Total: 5.07 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -2.64 Total: -15.05 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: 0.33 Total: -50.62 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -1.86 Total: -46.35 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 46.17 SS G_CDS: -0.62 Total: 45.55 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.02 -8.64 -42.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437690237.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.834 kcal (2) G-P(sol) polarization free energy of solvation -34.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds