Wall clock time and date at job start Tue Mar 31 2020 06:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 117.00053 * 2 1 4 4 O 1.20821 * 120.00049 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99916 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47030 * 180.02562 * 5 3 2 7 7 C 1.36936 * 119.99995 * 275.00618 * 6 5 3 8 8 H 1.08004 * 119.99580 * 146.63091 * 7 6 5 9 9 C 1.38812 * 120.00174 * 326.62134 * 7 6 5 10 10 N 1.31617 * 119.99863 * 335.84690 * 9 7 6 11 11 Si 1.86804 * 119.99984 * 155.83780 * 9 7 6 12 12 H 1.48500 * 109.47041 * 90.00656 * 11 9 7 13 13 H 1.48497 * 109.47128 * 210.00786 * 11 9 7 14 14 H 1.48500 * 109.47016 * 330.00437 * 11 9 7 15 15 S 1.65597 * 119.99984 * 95.00352 * 6 5 3 16 16 O 1.42101 * 106.40123 * 341.72081 * 15 6 5 17 17 O 1.42093 * 106.40608 * 208.79737 * 15 6 5 18 18 C 1.76205 * 107.21654 * 95.25479 * 15 6 5 19 19 C 1.38826 * 120.35455 * 90.00196 * 18 15 6 20 20 C 1.38380 * 118.48880 * 180.02562 * 19 18 15 21 21 C 1.38918 * 119.10841 * 0.02562 * 20 19 18 22 22 O 1.35670 * 119.68458 * 179.97438 * 21 20 19 23 23 C 1.42909 * 117.00250 * 179.97438 * 22 21 20 24 24 N 1.32251 * 120.63228 * 359.97438 * 21 20 19 25 25 C 1.31968 * 121.64736 * 0.03914 * 24 21 20 26 26 H 1.09005 * 109.47042 * 59.99965 * 1 2 3 27 27 H 1.09000 * 109.47316 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47109 * 300.00102 * 1 2 3 29 29 H 1.09005 * 109.46706 * 60.00641 * 5 3 2 30 30 H 1.08998 * 109.47713 * 300.00425 * 5 3 2 31 31 H 0.97006 * 119.99427 * 179.97438 * 10 9 7 32 32 H 1.08009 * 120.75517 * 0.02562 * 19 18 15 33 33 H 1.07996 * 120.44818 * 179.72140 * 20 19 18 34 34 H 1.08995 * 109.46686 * 300.00092 * 23 22 21 35 35 H 1.08996 * 109.46653 * 60.00337 * 23 22 21 36 36 H 1.08994 * 109.47267 * 180.02562 * 23 22 21 37 37 H 1.07999 * 119.58186 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.0771 3.3659 -1.1801 8 1 3.8475 4.4208 -1.2118 9 6 4.4689 2.7058 -2.3366 10 7 5.1864 1.6053 -2.2553 11 14 3.9778 3.3792 -4.0084 12 1 5.0213 4.3201 -4.4891 13 1 3.8399 2.2582 -4.9726 14 1 2.6816 4.0946 -3.8926 15 16 4.3359 3.4379 1.4300 16 8 3.7493 2.6512 2.4578 17 8 4.0381 4.8140 1.2388 18 6 6.0801 3.3332 1.6577 19 6 6.9129 4.3282 1.1640 20 6 8.2768 4.2068 1.3642 21 6 8.7636 3.0997 2.0478 22 8 10.0987 2.9687 2.2502 23 6 10.5365 1.8084 2.9604 24 7 7.9380 2.1723 2.5032 25 6 6.6330 2.2603 2.3276 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.9564 0.7806 -0.8893 30 1 3.9558 0.7808 0.8907 31 1 5.4598 1.1439 -3.0636 32 1 6.5057 5.1776 0.6357 33 1 8.9541 4.9600 0.9897 34 1 10.0875 1.7995 3.9535 35 1 10.2335 0.9138 2.4165 36 1 11.6223 1.8274 3.0532 37 1 5.9896 1.4834 2.7133 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000442603535.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:10 Heat of formation + Delta-G solvation = -141.650415 kcal Electronic energy + Delta-G solvation = -26992.193935 eV Core-core repulsion = 22863.424409 eV Total energy + Delta-G solvation = -4128.769527 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.081 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.27590 -39.69015 -37.66619 -36.36900 -36.04209 -35.18202 -34.61233 -32.18180 -31.84840 -30.52488 -28.56947 -27.23111 -26.50695 -24.22640 -23.41373 -22.82745 -20.60320 -18.75125 -18.28300 -17.65422 -17.21322 -16.92650 -16.80164 -16.21377 -15.90071 -15.71098 -15.49324 -14.90818 -14.48922 -14.34125 -14.04002 -13.52064 -13.25604 -13.19649 -12.98284 -12.92620 -12.61012 -12.06129 -11.86045 -11.75040 -11.57307 -11.28666 -11.16845 -11.11581 -10.91725 -10.90762 -10.67356 -10.44726 -10.31982 -10.25044 -9.85170 -9.65724 -9.45492 -9.31142 -8.47561 -8.13859 -6.78492 -4.31957 1.15183 1.53149 1.59212 2.98441 3.03284 3.10097 3.17246 3.20611 3.35957 3.83422 3.95571 4.31571 4.52568 4.58724 4.92932 5.12991 5.21111 5.32481 5.38336 5.40579 5.44253 5.51828 5.56138 5.61174 5.70650 5.82410 5.86869 6.03197 6.04041 6.38435 6.49064 6.70043 6.83128 7.02592 7.21982 7.32822 8.00091 8.05761 8.47410 8.54203 8.93209 10.19471 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.012685 B = 0.005013 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.796325 B = 5584.501565 C = 6477.269282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.368 6.368 3 C 0.446 3.554 4 O -0.497 6.497 5 C 0.132 3.868 6 N -0.794 5.794 7 C -0.243 4.243 8 H 0.115 0.885 9 C 0.035 3.965 10 N -0.829 5.829 11 Si 0.923 3.077 12 H -0.270 1.270 13 H -0.278 1.278 14 H -0.261 1.261 15 S 2.564 3.436 16 O -1.001 7.001 17 O -0.972 6.972 18 C -0.738 4.738 19 C 0.056 3.944 20 C -0.212 4.212 21 C 0.342 3.658 22 O -0.310 6.310 23 C 0.040 3.960 24 N -0.556 5.556 25 C 0.226 3.774 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.058 0.942 29 H 0.149 0.851 30 H 0.101 0.899 31 H 0.279 0.721 32 H 0.153 0.847 33 H 0.141 0.859 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.695 -3.635 2.301 5.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.285 6.285 3 C 0.287 3.713 4 O -0.382 6.382 5 C 0.003 3.997 6 N -0.616 5.616 7 C -0.389 4.389 8 H 0.132 0.868 9 C -0.178 4.178 10 N -0.467 5.467 11 Si 0.748 3.252 12 H -0.195 1.195 13 H -0.203 1.203 14 H -0.185 1.185 15 S 2.664 3.336 16 O -0.990 6.990 17 O -0.961 6.961 18 C -0.819 4.819 19 C 0.030 3.970 20 C -0.233 4.233 21 C 0.164 3.836 22 O -0.217 6.217 23 C -0.056 4.056 24 N -0.280 5.280 25 C 0.069 3.931 26 H 0.076 0.924 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.166 0.834 30 H 0.119 0.881 31 H 0.090 0.910 32 H 0.171 0.829 33 H 0.159 0.841 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.665 -3.575 3.453 6.175 hybrid contribution 0.146 0.478 -1.217 1.316 sum 3.811 -3.097 2.236 5.396 Atomic orbital electron populations 1.23118 0.77880 1.02689 1.02177 1.86518 1.22342 1.34623 1.84994 1.25013 0.93338 0.81013 0.71977 1.90603 1.66836 1.36287 1.44470 1.20835 0.85387 0.85782 1.07698 1.53165 1.68530 1.18742 1.21197 1.19795 1.39025 0.97020 0.83069 0.86791 1.25776 0.93927 0.96796 1.01263 1.69891 1.28307 1.17490 1.31039 0.85950 0.80178 0.79046 0.80046 1.19536 1.20258 1.18520 1.09755 0.74279 0.74891 0.74711 1.93357 1.76531 1.70509 1.58621 1.93382 1.83324 1.33562 1.85877 1.32887 1.32779 1.03649 1.12631 1.21121 0.91392 0.95521 0.88932 1.21088 0.96525 0.99526 1.06205 1.19968 0.83794 0.90133 0.89713 1.86227 1.18414 1.44897 1.72162 1.22842 0.99458 0.86819 0.96446 1.67326 1.05973 1.29177 1.25543 1.22041 0.89114 0.93824 0.88130 0.92363 0.88869 0.92339 0.83406 0.88091 0.91021 0.82936 0.84078 0.92346 0.92136 0.88867 0.81556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.57 16 2 O -0.37 -6.68 10.57 -39.25 -0.41 -7.10 16 3 C 0.45 9.58 8.00 36.01 0.29 9.87 16 4 O -0.50 -11.98 16.09 -18.75 -0.30 -12.28 16 5 C 0.13 2.80 5.57 -5.19 -0.03 2.77 16 6 N -0.79 -18.37 2.37 -61.08 -0.14 -18.51 16 7 C -0.24 -5.78 9.05 -15.06 -0.14 -5.92 16 8 H 0.11 2.76 7.45 -52.48 -0.39 2.37 16 9 C 0.03 0.79 4.97 -17.43 -0.09 0.70 16 10 N -0.83 -18.71 11.29 55.49 0.63 -18.08 16 11 Si 0.92 18.08 29.62 -169.99 -5.03 13.05 16 12 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 13 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 14 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 15 S 2.56 58.83 5.62 -107.50 -0.60 58.23 16 16 O -1.00 -23.83 16.10 -57.17 -0.92 -24.75 16 17 O -0.97 -24.43 16.35 -57.17 -0.93 -25.36 16 18 C -0.74 -15.09 5.99 -39.43 -0.24 -15.32 16 19 C 0.06 1.06 9.64 -39.31 -0.38 0.69 16 20 C -0.21 -3.64 10.04 -39.28 -0.39 -4.03 16 21 C 0.34 6.05 7.49 -17.12 -0.13 5.92 16 22 O -0.31 -4.77 10.48 -18.71 -0.20 -4.97 16 23 C 0.04 0.47 10.38 101.05 1.05 1.52 16 24 N -0.56 -10.25 9.22 -13.33 -0.12 -10.37 16 25 C 0.23 4.33 10.68 -17.56 -0.19 4.15 16 26 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 29 H 0.15 3.15 5.32 -51.93 -0.28 2.88 16 30 H 0.10 1.90 7.46 -51.93 -0.39 1.51 16 31 H 0.28 5.90 8.31 -40.82 -0.34 5.56 16 32 H 0.15 2.70 7.71 -52.48 -0.40 2.29 16 33 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 34 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.17 2.88 7.62 -52.49 -0.40 2.48 16 LS Contribution 342.07 15.07 5.15 5.15 Total: -1.00 -30.72 342.07 -6.01 -36.73 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -3.95 Total: 6.35 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 0.83 Total: 1.91 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.36 Total: -46.97 kcal Atomic # 8 Polarization: -71.69 SS G_CDS: -2.77 Total: -74.46 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Atomic # 16 Polarization: 58.83 SS G_CDS: -0.60 Total: 58.23 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.72 -6.01 -36.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442603535.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.919 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds