Wall clock time and date at job start Tue Mar 31 2020 05:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47276 * 69.56315 * 3 2 1 5 5 C 1.36937 * 120.00266 * 292.29134 * 4 3 2 6 6 H 1.07996 * 119.99861 * 142.07414 * 5 4 3 7 7 C 1.38814 * 119.99989 * 322.07839 * 5 4 3 8 8 N 1.31617 * 120.00097 * 162.26279 * 7 5 4 9 9 Si 1.86803 * 119.99887 * 342.26471 * 7 5 4 10 10 H 1.48503 * 109.47210 * 91.34681 * 9 7 5 11 11 H 1.48492 * 109.46999 * 211.34713 * 9 7 5 12 12 H 1.48504 * 109.47104 * 331.34683 * 9 7 5 13 13 S 1.65605 * 119.99889 * 112.29687 * 4 3 2 14 14 O 1.42099 * 106.40292 * 328.05188 * 13 4 3 15 15 O 1.42104 * 106.39792 * 195.13545 * 13 4 3 16 16 C 1.76203 * 107.21847 * 81.59496 * 13 4 3 17 17 C 1.34977 * 124.15615 * 244.95680 * 16 13 4 18 18 S 1.71754 * 105.46429 * 180.21728 * 17 16 13 19 19 N 1.56140 * 97.28097 * 359.74139 * 18 17 16 20 20 C 1.30653 * 109.79843 * 359.97438 * 19 18 17 21 21 C 1.47557 * 122.11557 * 180.02562 * 20 19 18 22 22 O 1.21499 * 119.99970 * 184.25487 * 21 20 19 23 23 O 1.34738 * 120.00233 * 3.98445 * 21 20 19 24 24 C 1.45198 * 117.00100 * 180.27617 * 23 21 20 25 25 H 4.40634 * 5.51525 * 180.02562 * 4 1 2 26 26 H 1.08998 * 109.47050 * 309.55859 * 3 2 1 27 27 H 1.09000 * 109.46740 * 189.56422 * 3 2 1 28 28 H 0.96995 * 120.00158 * 180.02562 * 8 7 5 29 29 H 1.08004 * 127.26362 * 359.95501 * 17 16 13 30 30 H 1.09000 * 109.47514 * 59.99841 * 24 23 21 31 31 H 1.09002 * 109.46855 * 179.97438 * 24 23 21 32 32 H 1.08998 * 109.46991 * 299.99292 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.4814 -1.2942 5 6 2.9394 -1.7874 -1.6565 6 1 2.7057 -2.0343 -2.6816 7 6 3.0417 -2.7941 -0.7062 8 7 2.5266 -3.9811 -0.9468 9 14 3.9106 -2.4640 0.9142 10 1 2.9226 -1.9961 1.9193 11 1 4.5523 -3.7137 1.3953 12 1 4.9476 -1.4196 0.7160 13 16 3.9232 0.5532 -2.3191 14 8 3.3575 1.8390 -2.1048 15 8 3.9487 -0.0827 -3.5896 16 6 5.5970 0.6492 -1.7770 17 6 6.1741 1.7698 -1.2941 18 16 7.7917 1.3282 -0.9225 19 7 7.6927 -0.1687 -1.3554 20 6 6.4873 -0.4250 -1.7893 21 6 6.0942 -1.7642 -2.2682 22 8 4.9867 -1.9414 -2.7354 23 8 6.9653 -2.7893 -2.1925 24 6 6.5128 -4.0769 -2.6879 25 1 -1.0499 0.0001 -0.0003 26 1 3.0097 -0.6537 0.7923 27 1 3.0089 1.0142 0.1708 28 1 2.5977 -4.6844 -0.2826 29 1 5.7164 2.7404 -1.1716 30 1 6.2542 -3.9898 -3.7432 31 1 7.3086 -4.8122 -2.5688 32 1 5.6360 -4.3955 -2.1241 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490866367.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:38 Heat of formation + Delta-G solvation = -11.237426 kcal Electronic energy + Delta-G solvation = -25441.723187 eV Core-core repulsion = 21625.528568 eV Total energy + Delta-G solvation = -3816.194619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 330.022 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.16654 -38.42933 -36.62109 -36.12464 -35.41328 -34.44792 -32.75116 -31.58514 -31.50964 -27.95574 -26.90714 -25.88303 -24.14665 -22.25548 -20.23808 -18.82360 -18.53172 -18.11320 -17.69495 -16.81579 -16.54390 -16.06328 -16.02195 -15.68740 -15.15496 -14.52117 -14.17035 -13.78544 -13.67453 -13.29776 -13.12003 -12.96281 -12.63574 -12.47731 -11.80467 -11.44826 -11.37935 -11.19873 -11.01804 -10.84573 -10.78850 -10.59692 -10.40657 -10.20055 -10.07676 -9.88552 -9.79125 -9.74490 -9.59700 -9.06572 -8.76246 -8.41901 -6.82671 -4.12916 0.67525 1.18453 1.58171 1.80299 1.95556 2.83350 2.96167 3.00427 3.19294 3.35225 3.45969 3.49234 3.81543 4.22587 4.62377 4.78903 4.91176 5.03532 5.20529 5.42247 5.61724 5.63382 5.74146 5.75247 5.76611 5.96140 6.04936 6.34702 6.44597 6.75873 6.95236 7.23424 8.17589 8.26418 8.34784 8.68175 8.77128 10.22419 Molecular weight = 330.02amu Principal moments of inertia in cm(-1) A = 0.011960 B = 0.008787 C = 0.006675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.667552 B = 3185.651501 C = 4193.945124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C 0.223 3.777 4 N -0.819 5.819 5 C -0.172 4.172 6 H 0.137 0.863 7 C 0.064 3.936 8 N -0.806 5.806 9 Si 0.860 3.140 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.260 1.260 13 S 2.528 3.472 14 O -1.000 7.000 15 O -0.943 6.943 16 C -0.670 4.670 17 C -0.184 4.184 18 S 0.433 5.567 19 N -0.507 5.507 20 C 0.157 3.843 21 C 0.474 3.526 22 O -0.383 6.383 23 O -0.351 6.351 24 C 0.037 3.963 25 H 0.214 0.786 26 H 0.066 0.934 27 H 0.099 0.901 28 H 0.283 0.717 29 H 0.197 0.803 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.398 4.652 4.179 8.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.164 4.164 3 C 0.097 3.903 4 N -0.642 5.642 5 C -0.325 4.325 6 H 0.154 0.846 7 C -0.153 4.153 8 N -0.444 5.444 9 Si 0.688 3.312 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.185 1.185 13 S 2.626 3.374 14 O -0.990 6.990 15 O -0.932 6.932 16 C -0.758 4.758 17 C -0.333 4.333 18 S 0.589 5.411 19 N -0.341 5.341 20 C -0.017 4.017 21 C 0.308 3.692 22 O -0.262 6.262 23 O -0.268 6.268 24 C -0.057 4.057 25 H 0.231 0.769 26 H 0.083 0.917 27 H 0.116 0.884 28 H 0.094 0.906 29 H 0.214 0.786 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.038 5.250 3.894 10.360 hybrid contribution -0.710 -0.527 0.653 1.100 sum 7.328 4.723 4.547 9.832 Atomic orbital electron populations 1.24634 0.95559 1.02109 1.00233 1.22972 0.94163 0.99157 1.00068 1.18212 0.85367 0.99426 0.87250 1.54267 1.56028 1.23260 1.30604 1.19544 1.34307 0.79225 0.99380 0.84560 1.25825 0.95613 0.94852 0.98964 1.69754 1.36505 1.02659 1.35531 0.87138 0.81229 0.78862 0.84017 1.18614 1.20486 1.18515 1.12670 0.72405 0.73948 0.78348 1.93342 1.76090 1.42681 1.86844 1.93423 1.85128 1.74473 1.40156 1.32972 1.31962 0.95909 1.14980 1.27134 1.02370 1.03118 1.00706 1.80255 1.09422 0.99682 1.51735 1.72441 1.24366 1.17092 1.20178 1.19684 0.87714 0.93632 1.00696 1.20107 0.83796 0.83695 0.81600 1.91347 1.17456 1.82217 1.35163 1.86509 1.44162 1.18966 1.77178 1.23275 1.01336 0.80865 1.00209 0.76880 0.91664 0.88355 0.90590 0.78584 0.91759 0.88841 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.72 19.25 29.55 0.57 -3.15 16 2 C -0.16 -3.32 13.28 -37.12 -0.49 -3.81 16 3 C 0.22 4.63 5.24 -6.83 -0.04 4.59 16 4 N -0.82 -19.14 2.55 -62.78 -0.16 -19.30 16 5 C -0.17 -4.32 5.85 -15.06 -0.09 -4.41 16 6 H 0.14 3.80 7.24 -52.49 -0.38 3.42 16 7 C 0.06 1.57 5.22 -17.43 -0.09 1.48 16 8 N -0.81 -20.11 13.97 55.49 0.78 -19.34 16 9 Si 0.86 18.81 24.78 -169.99 -4.21 14.59 16 10 H -0.26 -5.36 6.75 56.52 0.38 -4.98 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 13 S 2.53 59.19 5.04 -107.50 -0.54 58.65 16 14 O -1.00 -23.58 16.59 -57.17 -0.95 -24.53 16 15 O -0.94 -24.82 14.45 -67.01 -0.97 -25.79 16 16 C -0.67 -13.80 5.98 -40.26 -0.24 -14.04 16 17 C -0.18 -2.99 10.89 29.57 0.32 -2.67 16 18 S 0.43 6.19 23.20 -107.50 -2.49 3.69 16 19 N -0.51 -9.62 11.21 24.86 0.28 -9.34 16 20 C 0.16 3.33 6.66 -84.09 -0.56 2.77 16 21 C 0.47 10.64 7.94 34.53 0.27 10.92 16 22 O -0.38 -9.35 8.31 -27.29 -0.23 -9.58 16 23 O -0.35 -7.09 10.46 -40.60 -0.42 -7.51 16 24 C 0.04 0.61 10.56 101.05 1.07 1.68 16 25 H 0.21 2.85 7.80 -54.10 -0.42 2.43 16 26 H 0.07 1.34 2.53 -51.93 -0.13 1.21 16 27 H 0.10 1.78 7.32 -51.93 -0.38 1.40 16 28 H 0.28 6.51 8.31 -40.82 -0.34 6.17 16 29 H 0.20 2.59 8.03 -52.48 -0.42 2.17 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 308.08 15.07 4.64 4.64 Total: -1.00 -31.53 308.08 -5.71 -37.24 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -2.16 Total: 3.19 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 0.72 Total: -6.63 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.89 Total: -47.97 kcal Atomic # 8 Polarization: -64.84 SS G_CDS: -2.57 Total: -67.41 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.21 Total: 14.59 kcal Atomic # 16 Polarization: 65.37 SS G_CDS: -3.04 Total: 62.34 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.53 -5.71 -37.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490866367.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.007 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds