Wall clock time and date at job start Tue Mar 31 2020 05:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47119 * 197.73137 * 3 2 1 5 5 C 1.36940 * 119.99663 * 86.83803 * 4 3 2 6 6 H 1.08006 * 119.99727 * 173.10708 * 5 4 3 7 7 C 1.38803 * 120.00267 * 352.83705 * 5 4 3 8 8 N 1.31619 * 119.99892 * 335.43594 * 7 5 4 9 9 Si 1.86801 * 120.00505 * 155.43453 * 7 5 4 10 10 H 1.48503 * 109.46998 * 89.99564 * 9 7 5 11 11 H 1.48496 * 109.47460 * 210.00237 * 9 7 5 12 12 H 1.48506 * 109.46784 * 330.00210 * 9 7 5 13 13 S 1.65593 * 120.00257 * 266.84063 * 4 3 2 14 14 O 1.42100 * 106.40406 * 23.53926 * 13 4 3 15 15 O 1.42102 * 106.40389 * 156.46012 * 13 4 3 16 16 C 1.76204 * 107.21997 * 270.00025 * 13 4 3 17 17 C 1.38201 * 120.37649 * 89.99905 * 16 13 4 18 18 N 1.31883 * 120.89622 * 179.97438 * 17 16 13 19 19 C 1.31920 * 121.76383 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 119.67280 * 179.97438 * 19 18 17 21 21 C 1.38854 * 120.65571 * 0.02562 * 19 18 17 22 22 O 1.35942 * 120.48129 * 179.97438 * 21 19 18 23 23 C 1.42893 * 117.00401 * 179.97438 * 22 21 19 24 24 C 1.38599 * 120.37316 * 269.72026 * 16 13 4 25 25 H 4.40642 * 5.51498 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.46798 * 77.73556 * 3 2 1 27 27 H 1.08998 * 109.47678 * 317.73827 * 3 2 1 28 28 H 0.97007 * 119.99962 * 179.97438 * 8 7 5 29 29 H 1.07998 * 119.54843 * 359.97438 * 17 16 13 30 30 H 1.09003 * 109.47154 * 180.02562 * 23 22 21 31 31 H 1.08998 * 109.47140 * 299.99571 * 23 22 21 32 32 H 1.09001 * 109.47199 * 60.00059 * 23 22 21 33 33 H 1.08002 * 120.81024 * 0.02710 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.3165 0.4207 5 6 3.3001 1.5915 1.7518 6 1 3.7633 2.5179 2.0580 7 6 2.8685 0.6822 2.7076 8 7 1.9082 -0.1702 2.4187 9 14 3.6505 0.6683 4.4040 10 1 2.9043 1.5873 5.3006 11 1 3.6061 -0.7086 4.9583 12 1 5.0630 1.1153 4.3015 13 16 3.4837 2.4712 -0.7135 14 8 2.7280 2.1396 -1.8703 15 8 3.3839 3.7255 -0.0531 16 6 5.1786 2.2738 -1.1530 17 6 5.5380 1.4391 -2.1941 18 7 6.8033 1.2841 -2.5321 19 6 7.7737 1.9129 -1.8970 20 17 9.4211 1.6685 -2.3871 21 6 7.4906 2.7674 -0.8398 22 8 8.4934 3.4132 -0.1875 23 6 8.1180 4.2750 0.8886 24 6 6.1660 2.9585 -0.4622 25 1 -1.0503 -0.0004 0.0001 26 1 3.0093 -0.2175 -1.0043 27 1 3.0097 -0.7597 0.6911 28 1 1.6068 -0.8059 3.0866 29 1 4.7722 0.9063 -2.7383 30 1 9.0110 4.7265 1.3210 31 1 7.4602 5.0590 0.5137 32 1 7.5966 3.6973 1.6519 33 1 5.9133 3.6204 0.3530 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490875116.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:52 Heat of formation + Delta-G solvation = 5.543209 kcal Electronic energy + Delta-G solvation = -24001.816233 eV Core-core repulsion = 20184.305571 eV Total energy + Delta-G solvation = -3817.510662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 330.027 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -40.62609 -38.24388 -36.63824 -36.45519 -36.31490 -34.93728 -32.27141 -31.98612 -31.19250 -30.66552 -27.58750 -26.64926 -24.07424 -23.77984 -23.15817 -19.15842 -18.50046 -18.03701 -17.34286 -17.24459 -16.82692 -16.52124 -16.04154 -15.85529 -14.78267 -14.61041 -14.39500 -14.11194 -13.71863 -13.58860 -13.38998 -12.82181 -12.62295 -11.88200 -11.84840 -11.79018 -11.58279 -11.44672 -11.39822 -11.21633 -11.08556 -11.04428 -10.88889 -10.69891 -10.37277 -10.01419 -9.78760 -9.55836 -9.21663 -8.85691 -8.50547 -8.36459 -6.55121 -4.01598 0.54287 1.12797 1.16816 1.77218 2.96687 3.05516 3.13492 3.14868 3.38398 3.72747 4.01396 4.22640 4.36586 4.39156 4.54860 4.68444 4.83131 4.87282 4.97651 5.08627 5.09825 5.34243 5.42053 5.55959 5.64991 5.91346 6.01373 6.21977 6.61234 6.88377 6.95236 7.15630 7.27277 7.59556 8.08159 8.59360 8.94677 8.97900 10.39163 Molecular weight = 330.03amu Principal moments of inertia in cm(-1) A = 0.013562 B = 0.005052 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.043096 B = 5540.486069 C = 6461.261852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.097 4.097 3 C 0.244 3.756 4 N -0.817 5.817 5 C -0.304 4.304 6 H 0.115 0.885 7 C 0.048 3.952 8 N -0.824 5.824 9 Si 0.905 3.095 10 H -0.275 1.275 11 H -0.280 1.280 12 H -0.268 1.268 13 S 2.612 3.388 14 O -0.969 6.969 15 O -0.963 6.963 16 C -0.681 4.681 17 C 0.165 3.835 18 N -0.458 5.458 19 C 0.176 3.824 20 Cl -0.023 7.023 21 C 0.072 3.928 22 O -0.301 6.301 23 C 0.018 3.982 24 C -0.053 4.053 25 H 0.199 0.801 26 H 0.065 0.935 27 H 0.106 0.894 28 H 0.274 0.726 29 H 0.180 0.820 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.936 2.326 -2.399 9.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.100 4.100 3 C 0.119 3.881 4 N -0.646 5.646 5 C -0.442 4.442 6 H 0.133 0.867 7 C -0.163 4.163 8 N -0.462 5.462 9 Si 0.730 3.270 10 H -0.200 1.200 11 H -0.205 1.205 12 H -0.193 1.193 13 S 2.700 3.300 14 O -0.958 6.958 15 O -0.952 6.952 16 C -0.759 4.759 17 C 0.007 3.993 18 N -0.169 5.169 19 C 0.011 3.989 20 Cl 0.006 6.994 21 C 0.023 3.977 22 O -0.213 6.213 23 C -0.077 4.077 24 C -0.080 4.080 25 H 0.216 0.784 26 H 0.083 0.917 27 H 0.124 0.876 28 H 0.085 0.915 29 H 0.197 0.803 30 H 0.124 0.876 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.021 2.291 -3.593 9.977 hybrid contribution 0.635 0.153 1.840 1.952 sum 9.656 2.444 -1.753 10.114 Atomic orbital electron populations 1.24199 0.95310 1.01611 1.06999 1.22726 0.93930 0.98625 0.94687 1.17868 0.85150 0.87315 0.97738 1.53832 1.66814 1.27056 1.16879 1.19431 1.40106 1.05186 0.79481 0.86701 1.25183 0.95077 0.96144 0.99861 1.70194 1.20338 1.19788 1.35852 0.86299 0.80245 0.78050 0.82400 1.20021 1.20498 1.19285 1.06771 0.75276 0.75043 0.72924 1.93486 1.68637 1.84619 1.49095 1.93442 1.86192 1.41085 1.74467 1.33509 1.31530 1.05885 1.04939 1.22329 0.91442 0.93290 0.92271 1.67136 1.00570 1.21412 1.27818 1.21039 0.89031 0.95949 0.92929 1.98391 1.13962 1.95849 1.91208 1.19554 0.88559 0.95442 0.94159 1.86137 1.30976 1.57798 1.46436 1.23257 1.03182 0.93152 0.88148 1.21425 0.89832 0.97724 0.99018 0.78434 0.91708 0.87617 0.91468 0.80290 0.87574 0.91979 0.91699 0.82028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 75. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.53 19.25 29.55 0.57 -4.96 16 2 C -0.10 -2.19 11.24 -37.13 -0.42 -2.61 16 3 C 0.24 5.17 5.10 -6.83 -0.03 5.14 16 4 N -0.82 -18.06 2.88 -62.78 -0.18 -18.24 16 5 C -0.30 -7.07 9.38 -15.06 -0.14 -7.22 16 6 H 0.12 2.59 7.40 -52.48 -0.39 2.20 16 7 C 0.05 1.10 4.93 -17.43 -0.09 1.02 16 8 N -0.82 -19.52 8.94 55.49 0.50 -19.03 16 9 Si 0.90 17.85 29.62 -169.99 -5.04 12.81 16 10 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 11 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 12 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 13 S 2.61 54.41 5.61 -107.50 -0.60 53.81 16 14 O -0.97 -21.31 16.31 -57.17 -0.93 -22.24 16 15 O -0.96 -21.97 16.22 -57.17 -0.93 -22.90 16 16 C -0.68 -12.27 5.99 -39.46 -0.24 -12.51 16 17 C 0.17 2.82 10.68 -17.54 -0.19 2.63 16 18 N -0.46 -7.87 10.34 -10.25 -0.11 -7.97 16 19 C 0.18 2.90 7.29 -17.29 -0.13 2.77 16 20 Cl -0.02 -0.32 28.66 -51.86 -1.49 -1.81 16 21 C 0.07 1.15 6.70 -39.05 -0.26 0.89 16 22 O -0.30 -4.16 9.97 -19.56 -0.19 -4.36 16 23 C 0.02 0.18 9.83 101.05 0.99 1.17 16 24 C -0.05 -0.88 8.61 -39.14 -0.34 -1.22 16 25 H 0.20 3.40 7.80 -54.08 -0.42 2.98 16 26 H 0.06 1.17 7.68 -51.93 -0.40 0.78 16 27 H 0.11 2.26 6.42 -51.93 -0.33 1.93 16 28 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 29 H 0.18 2.70 7.62 -52.49 -0.40 2.30 16 30 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.59 7.68 -51.93 -0.40 0.19 16 32 H 0.06 0.66 7.71 -51.93 -0.40 0.26 16 33 H 0.16 2.46 6.09 -52.49 -0.32 2.14 16 LS Contribution 323.73 15.07 4.88 4.88 Total: -1.00 -28.97 323.73 -6.98 -35.94 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -2.62 Total: 3.98 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -0.27 Total: -14.88 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.21 Total: -45.24 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -2.06 Total: -49.50 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.04 Total: 12.81 kcal Atomic # 16 Polarization: 54.41 SS G_CDS: -0.60 Total: 53.81 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.49 Total: -1.81 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.97 -6.98 -35.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490875116.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.487 kcal (2) G-P(sol) polarization free energy of solvation -28.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds