Wall clock time and date at job start Tue Mar 31 2020 05:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34635 * 117.00336 * 2 1 4 4 O 1.21516 * 119.99784 * 0.02562 * 3 2 1 5 5 N 1.34773 * 119.99904 * 180.02562 * 3 2 1 6 6 C 1.46506 * 119.99778 * 179.97438 * 5 3 2 7 7 C 1.50695 * 109.46874 * 180.02562 * 6 5 3 8 8 O 1.21274 * 120.00413 * 0.27298 * 7 6 5 9 9 N 1.34784 * 119.99635 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99893 * 0.02562 * 9 7 6 11 11 C 1.50697 * 109.47293 * 90.00297 * 10 9 7 12 12 H 1.07997 * 120.00010 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00091 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00149 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00247 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47226 * 89.99205 * 15 13 11 17 17 H 1.48494 * 109.47051 * 209.99874 * 15 13 11 18 18 H 1.48508 * 109.46947 * 329.99558 * 15 13 11 19 19 C 1.46499 * 119.99971 * 179.97438 * 9 7 6 20 20 C 1.52999 * 109.47276 * 89.99654 * 19 9 7 21 21 N 1.46893 * 109.47361 * 180.02562 * 20 19 9 22 22 C 1.47013 * 110.99929 * 293.63619 * 21 20 19 23 23 C 1.53109 * 109.25866 * 177.60627 * 22 21 20 24 24 O 1.43011 * 109.25677 * 56.85034 * 23 22 21 25 25 C 1.43014 * 113.73945 * 301.32986 * 24 23 22 26 26 C 1.47012 * 111.00146 * 170.00252 * 21 20 19 27 27 H 1.08997 * 109.47254 * 59.99613 * 1 2 3 28 28 H 1.09000 * 109.47187 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46903 * 299.99587 * 1 2 3 30 30 H 0.97000 * 120.00556 * 0.02562 * 5 3 2 31 31 H 1.09005 * 109.46943 * 60.00092 * 6 5 3 32 32 H 1.09002 * 109.47064 * 300.00355 * 6 5 3 33 33 H 1.08997 * 109.46865 * 210.00034 * 10 9 7 34 34 H 1.08998 * 109.47058 * 329.99547 * 10 9 7 35 35 H 0.96995 * 120.00744 * 180.02562 * 14 13 11 36 36 H 1.08998 * 109.47416 * 209.99869 * 19 9 7 37 37 H 1.09008 * 109.47058 * 330.00468 * 19 9 7 38 38 H 1.08998 * 109.47074 * 300.00425 * 20 19 9 39 39 H 1.09007 * 109.46853 * 59.99785 * 20 19 9 40 40 H 1.08992 * 109.51039 * 297.54327 * 22 21 20 41 41 H 1.09006 * 109.50759 * 57.67723 * 22 21 20 42 42 H 1.08999 * 109.50103 * 296.91687 * 23 22 21 43 43 H 1.08994 * 109.53824 * 176.80489 * 23 22 21 44 44 H 1.08999 * 109.51245 * 298.73756 * 25 24 23 45 45 H 1.09006 * 109.54530 * 178.62599 * 25 24 23 46 46 H 1.09004 * 109.50986 * 302.32707 * 26 21 20 47 47 H 1.09010 * 109.50745 * 62.41541 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2700 -0.0005 6 6 4.0743 2.5754 -0.0011 7 6 5.5683 2.3778 -0.0022 8 8 6.0318 1.2571 -0.0076 9 7 6.3893 3.4467 -0.0024 10 6 5.8294 4.8004 -0.0009 11 6 5.6390 5.2637 1.4204 12 1 5.9077 4.6145 2.2406 13 6 5.1206 6.5160 1.6737 14 7 4.7929 7.3064 0.6750 15 14 4.8839 7.0900 3.4355 16 1 6.1148 7.7775 3.9017 17 1 3.7368 8.0308 3.4996 18 1 4.6119 5.9178 4.3057 19 6 7.8417 3.2547 -0.0029 20 6 8.3468 3.1880 -1.4456 21 7 9.8030 2.9949 -1.4462 22 6 10.4907 4.1719 -0.8959 23 6 11.9980 3.9051 -0.8597 24 8 12.4511 3.5797 -2.1765 25 6 11.8026 2.4377 -2.7428 26 6 10.2935 2.6897 -2.7980 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 3.9375 0.4565 -0.0013 31 1 3.7818 3.1326 0.8889 32 1 3.7811 3.1322 -0.8911 33 1 6.5124 5.4766 -0.5150 34 1 4.8676 4.7964 -0.5137 35 1 4.4286 8.1875 0.8531 36 1 8.3188 4.0893 0.5108 37 1 8.0855 2.3246 0.5106 38 1 7.8697 2.3534 -1.9593 39 1 8.1030 4.1180 -1.9593 40 1 10.2896 5.0385 -1.5256 41 1 10.1308 4.3643 0.1149 42 1 12.2039 3.0720 -0.1876 43 1 12.5174 4.7955 -0.5056 44 1 12.0030 1.5620 -2.1255 45 1 12.1802 2.2665 -3.7509 46 1 9.7895 1.8001 -3.1760 47 1 10.0885 3.5324 -3.4585 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490988467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:49 Heat of formation + Delta-G solvation = -148.452828 kcal Electronic energy + Delta-G solvation = -28935.305635 eV Core-core repulsion = 24732.873114 eV Total energy + Delta-G solvation = -4202.432521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.32519 -39.70926 -39.16495 -36.59075 -36.14344 -34.99013 -34.28932 -32.69336 -31.28977 -30.24066 -28.41319 -27.36390 -26.90694 -25.38817 -24.07279 -23.09757 -22.15150 -21.03765 -20.36405 -19.33432 -18.17006 -16.86268 -16.82389 -16.56602 -16.42324 -16.20067 -16.01387 -15.71736 -15.16304 -15.05128 -14.96325 -14.64229 -14.44064 -14.14417 -13.85921 -13.51736 -13.39146 -13.09622 -12.65261 -12.48117 -12.30752 -12.14824 -12.00728 -11.93996 -11.55956 -11.47795 -11.40341 -11.01311 -10.85628 -10.74492 -10.68415 -10.46626 -10.43887 -10.20858 -9.90418 -9.72598 -9.39662 -9.01951 -8.63448 -8.41305 -7.94613 -6.26120 -4.34790 2.27484 2.99556 3.08217 3.19930 3.28206 3.30915 3.47264 3.77526 4.04610 4.28050 4.50258 4.80315 4.93452 4.96406 5.06569 5.08247 5.10186 5.14983 5.21209 5.22344 5.39049 5.46874 5.48407 5.49538 5.56985 5.71659 5.74736 5.77163 5.87858 5.90401 5.99636 6.14099 6.30724 6.33442 6.48508 6.55501 6.93302 6.96936 7.03522 7.05942 7.31701 7.61892 7.67220 7.92745 8.06671 8.50922 8.60848 8.77060 9.34337 10.80862 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.008417 B = 0.003643 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3325.786976 B = 7683.818858 C =10516.359166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.375 6.375 3 C 0.646 3.354 4 O -0.570 6.570 5 N -0.696 5.696 6 C 0.122 3.878 7 C 0.514 3.486 8 O -0.568 6.568 9 N -0.586 5.586 10 C 0.233 3.767 11 C -0.545 4.545 12 H 0.063 0.937 13 C 0.068 3.932 14 N -0.888 5.888 15 Si 0.898 3.102 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.126 3.874 20 C 0.044 3.956 21 N -0.533 5.533 22 C 0.012 3.988 23 C 0.065 3.935 24 O -0.389 6.389 25 C 0.065 3.935 26 C 0.018 3.982 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.414 0.586 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.038 0.962 34 H 0.041 0.959 35 H 0.267 0.733 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.039 0.961 40 H 0.045 0.955 41 H 0.093 0.907 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.059 0.941 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.906 -10.184 -5.016 12.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.289 6.289 3 C 0.398 3.602 4 O -0.458 6.458 5 N -0.357 5.357 6 C -0.004 4.004 7 C 0.301 3.699 8 O -0.449 6.449 9 N -0.316 5.316 10 C 0.113 3.887 11 C -0.584 4.584 12 H 0.081 0.919 13 C -0.136 4.136 14 N -0.525 5.525 15 Si 0.725 3.275 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.197 1.197 19 C 0.003 3.997 20 C -0.085 4.085 21 N -0.259 5.259 22 C -0.117 4.117 23 C -0.012 4.012 24 O -0.308 6.308 25 C -0.012 4.012 26 C -0.110 4.110 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.252 0.748 31 H 0.134 0.866 32 H 0.118 0.882 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.112 0.888 42 H 0.078 0.922 43 H 0.115 0.885 44 H 0.077 0.923 45 H 0.113 0.887 46 H 0.103 0.897 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.933 -10.350 -4.862 12.454 hybrid contribution -0.624 0.919 0.546 1.238 sum 4.309 -9.431 -4.315 11.231 Atomic orbital electron populations 1.23151 0.74706 1.03113 1.02762 1.86227 1.23947 1.31286 1.87397 1.17999 0.83300 0.82103 0.76820 1.91038 1.64612 1.34632 1.55527 1.44337 1.02952 1.10879 1.77566 1.21137 0.89711 0.83294 1.06240 1.20207 0.88620 0.84678 0.76397 1.90612 1.77520 1.23907 1.52901 1.48109 1.05336 1.08375 1.69820 1.19566 0.94948 0.76132 0.98005 1.21430 1.44053 1.00891 0.91988 0.91887 1.24932 0.94683 0.96320 0.97618 1.69905 1.42207 1.09402 1.30992 0.86490 0.77896 0.78790 0.84313 1.20486 1.20960 1.19685 1.21218 0.80303 1.03108 0.95117 1.22500 0.86349 1.00817 0.98823 1.62138 1.05072 1.37223 1.21432 1.22891 0.95014 0.91895 1.01856 1.22683 0.93155 1.01079 0.84325 1.87959 1.63324 1.48204 1.31268 1.22643 0.90858 0.88706 0.98986 1.22767 0.96628 1.01518 0.90096 0.91925 0.88227 0.91874 0.74806 0.86636 0.88249 0.94353 0.94082 0.92339 0.90152 0.89892 0.90528 0.94258 0.93696 0.88846 0.92244 0.88473 0.92281 0.88688 0.89686 0.94015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.60 10.56 101.05 1.07 1.67 16 2 O -0.37 -5.36 10.61 -40.31 -0.43 -5.79 16 3 C 0.65 11.11 8.75 54.05 0.47 11.58 16 4 O -0.57 -11.51 16.13 -19.28 -0.31 -11.82 16 5 N -0.70 -11.61 5.53 -66.46 -0.37 -11.98 16 6 C 0.12 2.22 4.71 -5.19 -0.02 2.20 16 7 C 0.51 9.78 7.74 -10.98 -0.09 9.69 16 8 O -0.57 -11.32 15.25 5.56 0.08 -11.23 16 9 N -0.59 -11.27 2.46 -175.06 -0.43 -11.70 16 10 C 0.23 5.16 4.96 -5.20 -0.03 5.13 16 11 C -0.55 -13.50 9.28 -34.44 -0.32 -13.82 16 12 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 13 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -23.89 13.29 55.43 0.74 -23.15 16 15 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 C 0.13 2.15 5.34 -4.04 -0.02 2.13 16 20 C 0.04 0.66 5.28 -3.83 -0.02 0.64 16 21 N -0.53 -7.17 4.73 -234.30 -1.11 -8.28 16 22 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 23 C 0.06 0.72 7.01 37.21 0.26 0.98 16 24 O -0.39 -4.83 10.83 -35.23 -0.38 -5.21 16 25 C 0.07 0.68 7.01 37.21 0.26 0.94 16 26 C 0.02 0.21 5.64 -3.71 -0.02 0.19 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.41 6.48 7.55 -40.82 -0.31 6.17 16 31 H 0.12 2.32 8.00 -51.93 -0.42 1.91 16 32 H 0.10 1.80 7.40 -51.93 -0.38 1.42 16 33 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.04 0.95 6.44 -51.93 -0.33 0.61 16 35 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.08 1.37 6.45 -51.93 -0.33 1.04 16 37 H 0.08 1.47 7.43 -51.92 -0.39 1.09 16 38 H 0.08 1.20 8.04 -51.93 -0.42 0.79 16 39 H 0.04 0.62 8.12 -51.92 -0.42 0.20 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 1.18 6.38 -51.93 -0.33 0.84 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 47 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -30.08 388.22 -7.47 -37.55 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -7.52 Total: 7.42 kcal Atomic # 6 Polarization: 21.70 SS G_CDS: 1.43 Total: 23.13 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -1.17 Total: -55.11 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -1.04 Total: -34.05 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.08 -7.47 -37.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490988467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.907 kcal (2) G-P(sol) polarization free energy of solvation -30.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds