Wall clock time and date at job start Tue Mar 31 2020 05:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47163 * 2 1 4 4 N 1.46501 * 109.47135 * 120.00054 * 2 1 3 5 5 C 1.34777 * 119.99888 * 154.99782 * 4 2 1 6 6 O 1.21508 * 120.00111 * 0.02562 * 5 4 2 7 7 O 1.34632 * 119.99844 * 179.97438 * 5 4 2 8 8 C 1.45197 * 117.00060 * 180.02562 * 7 5 4 9 9 C 1.53516 * 114.17282 * 150.00235 * 8 7 5 10 10 N 1.47481 * 87.93345 * 87.62393 * 9 8 7 11 11 C 1.46896 * 111.00145 * 138.70617 * 10 9 8 12 12 C 1.52999 * 109.47091 * 169.99931 * 11 10 9 13 13 H 1.08992 * 109.47188 * 60.00120 * 12 11 10 14 14 O 1.42903 * 109.47030 * 299.99792 * 12 11 10 15 15 C 1.53006 * 109.46811 * 179.97438 * 12 11 10 16 16 N 1.46902 * 109.46626 * 184.99853 * 15 12 11 17 17 C 1.46897 * 111.00044 * 66.04918 * 16 15 12 18 18 C 1.46908 * 110.99486 * 190.00122 * 16 15 12 19 19 C 1.50704 * 109.46862 * 170.00391 * 18 16 15 20 20 H 1.08006 * 119.99946 * 359.97438 * 19 18 16 21 21 C 1.37871 * 119.99830 * 179.97438 * 19 18 16 22 22 N 1.31513 * 120.00017 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99769 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47010 * 59.99956 * 23 21 19 25 25 H 1.48501 * 109.46773 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46913 * 299.99855 * 23 21 19 27 27 C 1.47483 * 87.83741 * 27.00987 * 10 9 8 28 28 H 1.09007 * 109.47563 * 299.99986 * 1 2 3 29 29 H 1.09003 * 109.47237 * 60.00189 * 1 2 3 30 30 H 1.09004 * 109.47330 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46834 * 240.00099 * 2 1 3 32 32 H 1.09007 * 109.46869 * 59.99589 * 3 2 1 33 33 H 1.08995 * 109.47190 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47143 * 300.00424 * 3 2 1 35 35 H 0.96999 * 120.00074 * 334.99929 * 4 2 1 36 36 H 1.08996 * 113.25760 * 17.04803 * 8 7 5 37 37 H 1.09004 * 113.47373 * 332.85894 * 9 8 7 38 38 H 1.08999 * 113.53348 * 202.40061 * 9 8 7 39 39 H 1.09009 * 109.47270 * 49.99800 * 11 10 9 40 40 H 1.09001 * 109.47084 * 290.00074 * 11 10 9 41 41 H 0.96698 * 113.99763 * 300.00194 * 14 12 11 42 42 H 1.08993 * 109.46955 * 305.00200 * 15 12 11 43 43 H 1.09000 * 109.47050 * 65.00029 * 15 12 11 44 44 H 1.09000 * 109.47532 * 59.99517 * 17 16 15 45 45 H 1.09001 * 109.47296 * 179.97438 * 17 16 15 46 46 H 1.08997 * 109.47027 * 299.99634 * 17 16 15 47 47 H 1.08998 * 109.46834 * 289.99664 * 18 16 15 48 48 H 1.08991 * 109.47038 * 50.00085 * 18 16 15 49 49 H 0.97007 * 119.99431 * 180.02562 * 22 21 19 50 50 H 1.09000 * 113.47372 * 87.75195 * 27 10 9 51 51 H 1.08999 * 113.47482 * 218.22655 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2403 -1.2592 1.1943 6 8 3.9371 -1.1986 0.2007 7 8 3.6893 -1.8934 2.2938 8 6 5.0146 -2.4818 2.2203 9 6 5.7571 -2.5283 3.5632 10 7 5.1088 -3.8287 3.8158 11 6 6.0535 -4.7802 4.4159 12 6 5.2950 -6.0212 4.8906 13 1 4.7976 -6.4899 4.0416 14 8 4.3199 -5.6404 5.8634 15 6 6.2791 -7.0125 5.5152 16 7 5.5715 -8.2522 5.8621 17 6 5.0978 -8.9433 4.6555 18 6 6.4209 -9.1335 6.6744 19 6 5.5930 -10.2711 7.2144 20 1 4.5409 -10.3329 6.9781 21 6 6.1786 -11.2328 8.0099 22 7 7.4598 -11.1578 8.2972 23 14 5.1521 -12.6425 8.6799 24 1 4.5742 -13.4143 7.5505 25 1 6.0108 -13.5335 9.5009 26 1 4.0554 -12.1000 9.5213 27 6 5.0318 -4.0111 2.3543 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.4622 -0.7387 1.9895 36 1 5.6113 -2.0966 1.3936 37 1 5.4480 -1.7470 4.2575 38 1 6.8400 -2.5959 3.4596 39 1 6.5511 -4.3115 5.2651 40 1 6.7974 -5.0706 3.6740 41 1 4.6923 -5.2160 6.6483 42 1 7.0729 -7.2345 4.8020 43 1 6.7114 -6.5766 6.4159 44 1 5.9489 -9.1923 4.0216 45 1 4.5780 -9.8578 4.9409 46 1 4.4155 -8.2927 4.1084 47 1 7.2264 -9.5314 6.0572 48 1 6.8444 -8.5667 7.5035 49 1 7.8718 -11.8347 8.8566 50 1 5.9211 -4.4744 1.9270 51 1 4.1081 -4.4862 2.0241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496089029.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:12 Heat of formation + Delta-G solvation = -82.518552 kcal Electronic energy + Delta-G solvation = -28212.291820 eV Core-core repulsion = 24148.551518 eV Total energy + Delta-G solvation = -4063.740302 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.17382 -39.94676 -37.84050 -37.06379 -35.78866 -35.29942 -32.50993 -32.01350 -31.03109 -28.30489 -27.73439 -26.95103 -26.34778 -25.39053 -23.62709 -22.92015 -21.22227 -21.21054 -20.27975 -20.03362 -19.12013 -17.11500 -16.77716 -16.55679 -16.15346 -15.97693 -15.87732 -15.41790 -14.96110 -14.80476 -14.64294 -14.34085 -14.08668 -13.82935 -13.66412 -13.37977 -13.11994 -12.99751 -12.82222 -12.72495 -12.44109 -12.20466 -11.90866 -11.87328 -11.49579 -11.45922 -11.36432 -11.22546 -11.05977 -10.90878 -10.87133 -10.73941 -10.64640 -10.53305 -10.26153 -9.97410 -9.66011 -9.56982 -9.14397 -8.94508 -8.41643 -7.17642 -6.01036 -4.01964 1.76128 2.49839 3.35724 3.39064 3.42903 3.53251 3.84527 4.00847 4.31459 4.41028 4.45975 4.52989 4.65419 4.72237 4.73128 4.95737 4.99189 5.06507 5.09886 5.16489 5.20626 5.27142 5.31822 5.35376 5.37831 5.41150 5.45478 5.56754 5.59596 5.63438 5.66381 5.75118 5.97741 5.99847 6.08306 6.19906 6.21417 6.33526 6.45697 6.75782 6.78641 7.03106 7.28621 7.33999 7.82137 8.02035 8.07241 8.17518 8.23628 8.57492 9.05770 9.62149 11.09873 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.027680 B = 0.001742 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.305756 B =16073.861275 C =16617.414976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.153 3.847 3 C -0.167 4.167 4 N -0.706 5.706 5 C 0.647 3.353 6 O -0.574 6.574 7 O -0.333 6.333 8 C 0.077 3.923 9 C -0.002 4.002 10 N -0.445 5.445 11 C -0.018 4.018 12 C 0.125 3.875 13 H 0.093 0.907 14 O -0.534 6.534 15 C 0.024 3.976 16 N -0.529 5.529 17 C 0.036 3.964 18 C 0.193 3.807 19 C -0.506 4.506 20 H 0.064 0.936 21 C 0.054 3.946 22 N -0.901 5.901 23 Si 0.899 3.101 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.276 1.276 27 C -0.014 4.014 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.408 0.592 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.366 0.634 42 H 0.026 0.974 43 H 0.070 0.930 44 H 0.007 0.993 45 H 0.075 0.925 46 H 0.046 0.954 47 H -0.011 1.011 48 H 0.028 0.972 49 H 0.261 0.739 50 H 0.087 0.913 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.975 25.632 -16.354 31.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.050 3.950 3 C -0.225 4.225 4 N -0.366 5.366 5 C 0.400 3.600 6 O -0.464 6.464 7 O -0.246 6.246 8 C 0.020 3.980 9 C -0.131 4.131 10 N -0.167 5.167 11 C -0.148 4.148 12 C 0.064 3.936 13 H 0.110 0.890 14 O -0.337 6.337 15 C -0.106 4.106 16 N -0.253 5.253 17 C -0.112 4.112 18 C 0.068 3.932 19 C -0.544 4.544 20 H 0.082 0.918 21 C -0.147 4.147 22 N -0.541 5.541 23 Si 0.727 3.273 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.201 1.201 27 C -0.143 4.143 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.243 0.757 36 H 0.127 0.873 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.212 0.788 42 H 0.044 0.956 43 H 0.088 0.912 44 H 0.026 0.974 45 H 0.093 0.907 46 H 0.065 0.935 47 H 0.007 0.993 48 H 0.046 0.954 49 H 0.071 0.929 50 H 0.105 0.895 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.834 25.305 -16.423 31.434 hybrid contribution 1.457 -0.923 0.231 1.740 sum -7.377 24.382 -16.193 30.184 Atomic orbital electron populations 1.22104 0.93432 1.03147 1.03299 1.20978 0.94120 0.92731 0.87174 1.22239 1.02316 0.95573 1.02403 1.44826 1.15450 1.58062 1.18214 1.18226 0.82724 0.77133 0.81936 1.90976 1.57034 1.64414 1.33934 1.86342 1.34614 1.66245 1.37410 1.23639 0.80909 0.93813 0.99647 1.24170 0.97791 0.95355 0.95757 1.69102 1.36108 1.01629 1.09883 1.23540 0.94730 0.95963 1.00543 1.21749 0.89492 0.90575 0.91758 0.88950 1.86616 1.34451 1.81219 1.31432 1.22755 0.94816 0.93668 0.99340 1.62019 1.40132 1.05007 1.18149 1.22254 0.98288 0.99257 0.91425 1.19741 0.90971 0.90901 0.91608 1.21142 0.96055 1.07242 1.30008 0.91830 1.24992 0.95005 0.98274 0.96406 1.69954 1.10506 1.35464 1.38129 0.86540 0.79998 0.81780 0.78970 1.20303 1.21397 1.20114 1.24432 1.03698 0.95326 0.90869 0.91714 0.90426 0.91585 0.89055 0.92222 0.91936 0.91229 0.75714 0.87281 0.88514 0.89431 0.90263 0.92841 0.78821 0.95626 0.91185 0.97411 0.90654 0.93508 0.99349 0.95365 0.92930 0.89542 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.59 9.38 37.16 0.35 -0.24 16 2 C 0.15 0.93 3.18 -67.93 -0.22 0.72 16 3 C -0.17 -0.93 9.48 37.16 0.35 -0.58 16 4 N -0.71 -5.38 5.08 -58.73 -0.30 -5.67 16 5 C 0.65 7.06 8.71 54.06 0.47 7.53 16 6 O -0.57 -7.71 15.22 -19.28 -0.29 -8.00 16 7 O -0.33 -3.72 10.33 -40.30 -0.42 -4.14 16 8 C 0.08 0.77 4.61 -26.20 -0.12 0.64 16 9 C 0.00 -0.02 7.53 -7.54 -0.06 -0.07 16 10 N -0.45 -5.11 6.20 -244.62 -1.52 -6.62 16 11 C -0.02 -0.21 4.48 -3.83 -0.02 -0.23 16 12 C 0.12 1.86 3.19 -26.73 -0.09 1.77 16 13 H 0.09 1.48 6.33 -51.93 -0.33 1.15 16 14 O -0.53 -8.85 13.15 -35.23 -0.46 -9.32 16 15 C 0.02 0.42 4.60 -3.82 -0.02 0.40 16 16 N -0.53 -11.68 4.70 -244.37 -1.15 -12.83 16 17 C 0.04 0.74 9.14 60.06 0.55 1.29 16 18 C 0.19 5.11 4.72 -4.97 -0.02 5.09 16 19 C -0.51 -14.51 8.46 -34.44 -0.29 -14.80 16 20 H 0.06 1.82 7.12 -52.48 -0.37 1.44 16 21 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 22 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 23 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C -0.01 -0.15 7.56 -7.53 -0.06 -0.20 16 28 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.69 7.58 -51.93 -0.39 0.30 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.41 2.36 8.71 -40.82 -0.36 2.00 16 36 H 0.11 1.06 7.06 -51.93 -0.37 0.69 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 0.62 7.91 -51.93 -0.41 0.21 16 39 H 0.08 0.83 8.08 -51.92 -0.42 0.41 16 40 H 0.05 0.55 7.30 -51.93 -0.38 0.17 16 41 H 0.37 5.00 9.05 45.56 0.41 5.41 16 42 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 43 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 44 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 45 H 0.07 1.64 6.76 -51.93 -0.35 1.29 16 46 H 0.05 0.84 6.37 -51.93 -0.33 0.50 16 47 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 48 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 49 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 50 H 0.09 0.75 7.42 -51.93 -0.39 0.37 16 51 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 412.74 15.07 6.22 6.22 Total: -1.00 -34.76 412.74 -9.75 -44.51 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -8.29 Total: 2.39 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 0.74 Total: 2.79 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -2.23 Total: -51.40 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -1.17 Total: -21.45 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.76 -9.75 -44.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496089029.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.008 kcal (2) G-P(sol) polarization free energy of solvation -34.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds