Wall clock time and date at job start Tue Mar 31 2020 05:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47505 * 2 1 4 4 N 1.46505 * 109.47240 * 120.00360 * 2 1 3 5 5 C 1.34775 * 120.00179 * 84.99794 * 4 2 1 6 6 O 1.21513 * 120.00065 * 359.97438 * 5 4 2 7 7 O 1.34637 * 119.99876 * 180.02562 * 5 4 2 8 8 C 1.45209 * 116.99677 * 180.02562 * 7 5 4 9 9 C 1.53510 * 114.16513 * 209.99334 * 8 7 5 10 10 N 1.47473 * 87.93064 * 220.13836 * 9 8 7 11 11 C 1.46900 * 110.99932 * 138.70888 * 10 9 8 12 12 C 1.53003 * 109.47407 * 169.99733 * 11 10 9 13 13 H 1.08999 * 109.47269 * 305.00036 * 12 11 10 14 14 O 1.42903 * 109.46459 * 64.99929 * 12 11 10 15 15 C 1.53001 * 109.47376 * 184.99739 * 12 11 10 16 16 N 1.46898 * 109.46893 * 180.02562 * 15 12 11 17 17 C 1.46904 * 110.99700 * 293.95259 * 16 15 12 18 18 C 1.46900 * 110.99713 * 170.00124 * 16 15 12 19 19 C 1.50701 * 109.46974 * 189.99520 * 18 16 15 20 20 H 1.07992 * 120.00244 * 0.02562 * 19 18 16 21 21 C 1.37879 * 119.99822 * 180.02562 * 19 18 16 22 22 N 1.31516 * 120.00065 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99811 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47640 * 59.99464 * 23 21 19 25 25 H 1.48497 * 109.47289 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.47157 * 299.99376 * 23 21 19 27 27 C 1.47476 * 87.83857 * 27.01345 * 10 9 8 28 28 H 1.09008 * 109.46874 * 299.99994 * 1 2 3 29 29 H 1.08995 * 109.46921 * 59.99965 * 1 2 3 30 30 H 1.08999 * 109.47009 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47193 * 240.00090 * 2 1 3 32 32 H 1.08999 * 109.47448 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47091 * 300.00281 * 3 2 1 34 34 H 1.09008 * 109.47050 * 60.00114 * 3 2 1 35 35 H 0.97004 * 119.99621 * 264.99940 * 4 2 1 36 36 H 1.08996 * 113.25457 * 342.94229 * 8 7 5 37 37 H 1.09003 * 113.47478 * 105.37347 * 9 8 7 38 38 H 1.09000 * 113.53420 * 334.91972 * 9 8 7 39 39 H 1.09005 * 109.47208 * 50.00045 * 11 10 9 40 40 H 1.08999 * 109.46786 * 289.99823 * 11 10 9 41 41 H 0.96700 * 114.00311 * 60.00313 * 14 12 11 42 42 H 1.08999 * 109.47164 * 300.00361 * 15 12 11 43 43 H 1.08997 * 109.47124 * 60.00063 * 15 12 11 44 44 H 1.09000 * 109.47293 * 60.00423 * 17 16 15 45 45 H 1.08996 * 109.47257 * 180.02562 * 17 16 15 46 46 H 1.09003 * 109.47219 * 300.00099 * 17 16 15 47 47 H 1.09001 * 109.47261 * 309.99867 * 18 16 15 48 48 H 1.09010 * 109.46835 * 69.99701 * 18 16 15 49 49 H 0.97001 * 119.99978 * 180.02562 * 22 21 19 50 50 H 1.09005 * 113.47492 * 87.75450 * 27 10 9 51 51 H 1.08996 * 113.48106 * 218.22364 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1471 -2.0323 1.1943 6 8 1.8576 -2.6691 0.2007 7 8 2.5954 -2.6670 2.2938 8 6 2.7094 -4.1127 2.2199 9 6 2.5058 -4.8286 3.5625 10 7 3.6083 -5.7331 3.1865 11 6 4.4863 -5.9981 4.3340 12 6 5.4619 -7.1226 3.9807 13 1 4.9030 -7.9980 3.6499 14 8 6.3304 -6.6877 2.9326 15 6 6.2921 -7.4838 5.2141 16 7 7.2292 -8.5630 4.8747 17 6 6.5102 -9.8052 4.5612 18 6 8.2010 -8.7756 5.9555 19 6 9.2857 -9.7073 5.4796 20 1 9.2563 -10.1017 4.4747 21 6 10.3157 -10.0563 6.3273 22 7 10.3518 -9.5756 7.5509 23 14 11.6605 -11.2105 5.7372 24 1 12.3478 -10.6117 4.5649 25 1 12.6429 -11.4256 6.8297 26 1 11.0602 -12.5118 5.3475 27 6 4.1444 -4.6419 2.3517 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8901 35 1 2.2491 -0.1824 1.9895 36 1 2.1477 -4.5470 1.3928 37 1 1.5416 -5.3303 3.6453 38 1 2.7317 -4.2045 4.4271 39 1 3.8833 -6.2964 5.1917 40 1 5.0458 -5.0955 4.5795 41 1 6.8601 -5.9106 3.1576 42 1 6.8510 -6.6085 5.5450 43 1 5.6297 -7.8154 6.0136 44 1 5.8480 -9.6373 3.7119 45 1 7.2276 -10.5877 4.3140 46 1 5.9216 -10.1124 5.4257 47 1 8.6418 -7.8204 6.2409 48 1 7.6967 -9.2147 6.8164 49 1 11.0766 -9.8208 8.1471 50 1 4.8080 -3.9673 2.8927 51 1 4.5689 -4.9852 1.4084 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496089033.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:16 Heat of formation + Delta-G solvation = -86.464688 kcal Electronic energy + Delta-G solvation = -28115.269095 eV Core-core repulsion = 24051.357675 eV Total energy + Delta-G solvation = -4063.911419 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.16473 -40.00997 -37.87434 -37.13227 -35.84426 -35.32659 -32.51729 -32.05844 -31.12402 -28.28966 -27.76826 -26.94010 -26.28194 -25.41815 -23.75971 -22.61146 -21.29959 -21.10670 -20.43808 -20.04169 -19.27338 -17.38813 -16.69348 -16.50465 -16.22722 -16.07259 -15.66260 -15.58066 -14.93832 -14.78874 -14.61564 -14.44873 -14.07703 -13.76066 -13.61556 -13.33621 -13.01388 -12.97054 -12.79038 -12.72469 -12.56739 -12.29416 -12.00945 -11.89422 -11.87586 -11.51848 -11.30420 -11.12866 -11.03988 -10.94356 -10.85509 -10.73201 -10.64593 -10.46274 -10.28235 -9.98172 -9.69758 -9.60335 -9.22803 -9.06868 -8.41750 -7.17451 -6.01223 -4.02126 1.76093 2.47783 3.35748 3.39052 3.42895 3.56192 3.80477 4.02218 4.27852 4.42393 4.49223 4.55496 4.65156 4.69122 4.74056 4.91601 4.97275 5.03056 5.09276 5.13166 5.23282 5.24111 5.25238 5.34773 5.36075 5.42910 5.51095 5.56708 5.58329 5.63837 5.72870 5.74145 5.94583 5.97159 6.08348 6.19951 6.23850 6.34493 6.42844 6.71254 6.81402 6.99281 7.28482 7.34441 7.81965 7.98474 8.00930 8.12688 8.22790 8.57523 9.05799 9.62015 11.09693 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.030872 B = 0.001661 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.747250 B =16848.589860 C =17132.434329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.152 3.848 3 C -0.162 4.162 4 N -0.708 5.708 5 C 0.647 3.353 6 O -0.569 6.569 7 O -0.359 6.359 8 C 0.073 3.927 9 C -0.002 4.002 10 N -0.452 5.452 11 C -0.010 4.010 12 C 0.122 3.878 13 H 0.103 0.897 14 O -0.540 6.540 15 C 0.024 3.976 16 N -0.528 5.528 17 C 0.037 3.963 18 C 0.193 3.807 19 C -0.506 4.506 20 H 0.064 0.936 21 C 0.054 3.946 22 N -0.901 5.901 23 Si 0.899 3.101 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.277 1.277 27 C -0.002 4.002 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.406 0.594 36 H 0.128 0.872 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.364 0.636 42 H 0.068 0.932 43 H 0.028 0.972 44 H 0.048 0.952 45 H 0.074 0.926 46 H 0.008 0.992 47 H 0.027 0.973 48 H -0.011 1.011 49 H 0.261 0.739 50 H 0.079 0.921 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.731 22.137 -10.561 32.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.049 3.951 3 C -0.219 4.219 4 N -0.368 5.368 5 C 0.400 3.600 6 O -0.457 6.457 7 O -0.272 6.272 8 C 0.017 3.983 9 C -0.130 4.130 10 N -0.176 5.176 11 C -0.140 4.140 12 C 0.062 3.938 13 H 0.120 0.880 14 O -0.343 6.343 15 C -0.106 4.106 16 N -0.253 5.253 17 C -0.112 4.112 18 C 0.068 3.932 19 C -0.544 4.544 20 H 0.082 0.918 21 C -0.147 4.147 22 N -0.541 5.541 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.214 1.214 26 H -0.203 1.203 27 C -0.131 4.131 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.240 0.760 36 H 0.146 0.854 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.210 0.790 42 H 0.086 0.914 43 H 0.046 0.954 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.026 0.974 47 H 0.046 0.954 48 H 0.007 0.993 49 H 0.071 0.929 50 H 0.097 0.903 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.863 20.690 -11.850 31.682 hybrid contribution 0.873 0.560 1.856 2.126 sum -19.989 21.250 -9.994 30.839 Atomic orbital electron populations 1.22239 0.94966 1.02963 1.02377 1.20983 0.94273 0.92581 0.87234 1.22101 1.02078 0.94471 1.03290 1.44851 1.70203 1.03567 1.18138 1.18194 0.76492 0.83334 0.81987 1.91000 1.55102 1.65820 1.33775 1.86332 1.78944 1.23757 1.38189 1.24627 0.98928 0.74397 1.00356 1.24241 0.98686 0.93813 0.96308 1.68900 1.06540 1.28013 1.14136 1.23493 0.96620 1.00073 0.93769 1.21865 0.88589 0.95267 0.88104 0.87973 1.86625 1.57385 1.50563 1.39765 1.22723 0.95276 0.97231 0.95339 1.62016 1.14525 1.04935 1.43775 1.22250 0.97542 0.93436 0.97962 1.19742 0.89580 0.96911 0.87001 1.21143 1.07102 1.27094 0.99099 0.91817 1.24993 0.98192 0.96633 0.94860 1.69953 1.32934 1.44949 1.06239 0.86540 0.81403 0.81153 0.78188 1.20140 1.21409 1.20272 1.24391 0.95589 0.92109 1.01020 0.92287 0.91195 0.91872 0.88968 0.91636 0.90389 0.91798 0.75962 0.85446 0.88487 0.90126 0.89807 0.92982 0.78986 0.91401 0.95384 0.93311 0.90733 0.97383 0.95448 0.99333 0.92934 0.90264 0.88123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 9.48 37.16 0.35 -0.54 16 2 C 0.15 0.87 3.18 -67.93 -0.22 0.65 16 3 C -0.16 -0.50 9.38 37.15 0.35 -0.16 16 4 N -0.71 -4.88 5.08 -58.73 -0.30 -5.18 16 5 C 0.65 6.76 8.71 54.05 0.47 7.23 16 6 O -0.57 -7.70 15.22 -19.28 -0.29 -8.00 16 7 O -0.36 -3.61 10.33 -40.32 -0.42 -4.02 16 8 C 0.07 0.75 4.61 -26.20 -0.12 0.62 16 9 C 0.00 -0.02 7.53 -7.56 -0.06 -0.07 16 10 N -0.45 -5.09 6.31 -244.68 -1.54 -6.63 16 11 C -0.01 -0.12 4.53 -3.82 -0.02 -0.13 16 12 C 0.12 1.78 3.08 -26.73 -0.08 1.70 16 13 H 0.10 1.62 6.55 -51.93 -0.34 1.28 16 14 O -0.54 -8.47 12.54 -35.23 -0.44 -8.91 16 15 C 0.02 0.42 4.62 -3.82 -0.02 0.40 16 16 N -0.53 -11.57 4.62 -244.36 -1.13 -12.70 16 17 C 0.04 0.74 9.14 60.07 0.55 1.29 16 18 C 0.19 5.09 4.72 -4.98 -0.02 5.06 16 19 C -0.51 -14.47 8.46 -34.44 -0.29 -14.76 16 20 H 0.06 1.82 7.12 -52.49 -0.37 1.44 16 21 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 22 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 23 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.00 -0.02 6.94 -7.55 -0.05 -0.08 16 28 H 0.06 0.27 8.14 -51.92 -0.42 -0.16 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.68 7.58 -51.93 -0.39 0.29 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.06 0.15 8.14 -51.92 -0.42 -0.28 16 35 H 0.41 1.88 8.71 -40.82 -0.36 1.52 16 36 H 0.13 1.44 7.06 -51.93 -0.37 1.08 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.67 7.91 -51.93 -0.41 0.26 16 39 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 40 H 0.05 0.54 7.30 -51.93 -0.38 0.16 16 41 H 0.36 4.71 9.05 45.56 0.41 5.12 16 42 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 43 H 0.03 0.48 8.12 -51.93 -0.42 0.05 16 44 H 0.05 0.88 6.47 -51.93 -0.34 0.54 16 45 H 0.07 1.63 6.76 -51.93 -0.35 1.28 16 46 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 47 H 0.03 0.76 7.93 -51.93 -0.41 0.35 16 48 H -0.01 -0.31 8.12 -51.92 -0.42 -0.73 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 50 H 0.08 0.78 7.42 -51.93 -0.39 0.39 16 51 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 411.81 15.07 6.21 6.21 Total: -1.00 -33.96 411.81 -9.76 -43.73 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -8.31 Total: 2.13 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 0.75 Total: 2.69 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -2.23 Total: -50.74 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -1.15 Total: -20.93 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.96 -9.76 -43.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496089033.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.739 kcal (2) G-P(sol) polarization free energy of solvation -33.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds