Wall clock time and date at job start Tue Mar 31 2020 05:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45199 * 109.47050 * 2 1 4 4 C 1.34636 * 116.99979 * 180.02562 * 3 2 1 5 5 O 1.21509 * 119.99785 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00027 * 180.02562 * 4 3 2 7 7 C 1.47025 * 125.65088 * 359.95003 * 6 4 3 8 8 C 1.54322 * 107.27350 * 181.10095 * 7 6 4 9 9 C 1.55152 * 102.94097 * 22.19563 * 8 7 6 10 10 H 1.08999 * 111.04183 * 82.59090 * 9 8 7 11 11 N 1.46902 * 111.00169 * 206.42611 * 9 8 7 12 12 C 1.46900 * 110.99938 * 198.64743 * 11 9 8 13 13 C 1.52998 * 109.47327 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.47397 * 305.00096 * 13 12 11 15 15 O 1.42901 * 109.46910 * 65.00052 * 13 12 11 16 16 C 1.52999 * 109.47415 * 185.00028 * 13 12 11 17 17 N 1.46904 * 109.47545 * 177.28627 * 16 13 12 18 18 C 1.46894 * 111.00357 * 160.25493 * 17 16 13 19 19 C 1.46898 * 111.00007 * 284.21371 * 17 16 13 20 20 C 1.50696 * 109.47118 * 169.99600 * 19 17 16 21 21 H 1.07999 * 120.00199 * 359.97438 * 20 19 17 22 22 C 1.37886 * 120.00060 * 179.97438 * 20 19 17 23 23 N 1.31509 * 119.99990 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99766 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46861 * 269.99793 * 24 22 20 26 26 H 1.48496 * 109.47556 * 29.99745 * 24 22 20 27 27 H 1.48503 * 109.47352 * 150.00099 * 24 22 20 28 28 C 1.47427 * 125.65049 * 180.02562 * 6 4 3 29 29 H 1.09000 * 109.46978 * 299.99450 * 1 2 3 30 30 H 1.09003 * 109.46935 * 60.00104 * 1 2 3 31 31 H 1.08999 * 109.46986 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46978 * 240.00550 * 2 1 3 33 33 H 1.08999 * 109.47056 * 120.00385 * 2 1 3 34 34 H 1.09000 * 109.87855 * 300.51911 * 7 6 4 35 35 H 1.08999 * 109.87740 * 61.52861 * 7 6 4 36 36 H 1.08993 * 110.71922 * 263.83099 * 8 7 6 37 37 H 1.09003 * 110.72005 * 140.55858 * 8 7 6 38 38 H 1.00892 * 111.00318 * 74.69607 * 11 9 8 39 39 H 1.09007 * 109.47405 * 60.00133 * 12 11 9 40 40 H 1.08997 * 109.47504 * 300.00413 * 12 11 9 41 41 H 0.96700 * 113.99794 * 60.00539 * 15 13 12 42 42 H 1.08997 * 109.47171 * 57.29029 * 16 13 12 43 43 H 1.08999 * 109.47518 * 297.28962 * 16 13 12 44 44 H 1.08994 * 109.47076 * 189.21188 * 18 17 16 45 45 H 1.08994 * 109.47180 * 309.21719 * 18 17 16 46 46 H 1.09003 * 109.46953 * 69.21300 * 18 17 16 47 47 H 1.09010 * 109.47348 * 49.99597 * 19 17 16 48 48 H 1.09000 * 109.46867 * 289.99934 * 19 17 16 49 49 H 0.96997 * 120.00019 * 179.97438 * 23 22 20 50 50 H 1.09004 * 110.36315 * 36.98830 * 28 6 4 51 51 H 1.08994 * 110.46117 * 274.71713 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 -0.0005 5 8 4.0889 0.5817 -0.0005 6 7 3.8639 2.7908 0.0000 7 6 3.0874 4.0393 0.0000 8 6 4.0966 5.2065 -0.0277 9 6 5.3737 4.5479 -0.6129 10 1 5.3294 4.5072 -1.7012 11 7 6.5822 5.2521 -0.1639 12 6 7.7266 4.9384 -1.0299 13 6 8.9635 5.6888 -0.5323 14 1 8.7426 6.7546 -0.4732 15 8 9.3255 5.2048 0.7626 16 6 10.1232 5.4616 -1.5042 17 7 11.2917 6.2342 -1.0615 18 6 12.5272 5.7072 -1.6561 19 6 11.1265 7.6611 -1.3688 20 6 12.2160 8.4505 -0.6900 21 1 12.9569 7.9430 -0.0900 22 6 12.2671 9.8208 -0.8350 23 7 13.2177 10.5097 -0.2422 24 14 10.9853 10.6987 -1.8721 25 1 11.4579 10.7814 -3.2775 26 1 9.7074 9.9439 -1.8233 27 1 10.7718 12.0686 -1.3403 28 6 5.2993 3.1269 -0.0011 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.4500 4.0793 -0.8832 35 1 2.4765 4.0957 0.9009 36 1 4.2821 5.5798 0.9794 37 1 3.7429 6.0068 -0.6777 38 1 6.7887 5.0374 0.8000 39 1 7.5034 5.2441 -2.0521 40 1 7.9177 3.8655 -1.0052 41 1 9.5360 4.2612 0.7850 42 1 9.8298 5.7867 -2.5023 43 1 10.3759 4.4016 -1.5269 44 1 13.3880 6.1866 -1.1899 45 1 12.5784 4.6307 -1.4933 46 1 12.5320 5.9134 -2.7265 47 1 10.1546 8.0001 -1.0096 48 1 11.1875 7.8101 -2.4468 49 1 13.2538 11.4736 -0.3445 50 1 5.8542 2.4191 -0.6169 51 1 5.6904 3.1312 1.0163 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496451898.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:35 Heat of formation + Delta-G solvation = -114.881697 kcal Electronic energy + Delta-G solvation = -28409.317198 eV Core-core repulsion = 24344.173525 eV Total energy + Delta-G solvation = -4065.143673 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93522 -39.21579 -38.09928 -36.72444 -35.87562 -34.67588 -32.42442 -32.25851 -31.19179 -29.90174 -28.43795 -27.82796 -25.62779 -24.30033 -23.25585 -22.97014 -21.68554 -21.21209 -20.89549 -19.98248 -18.55637 -17.37509 -17.17774 -16.99359 -16.46384 -16.04518 -16.00055 -15.11896 -14.84597 -14.56426 -14.49749 -14.45076 -14.14939 -13.87286 -13.60892 -13.32832 -13.19632 -13.12499 -13.03739 -12.70830 -12.54828 -12.30323 -12.24655 -12.04700 -12.01896 -11.67401 -11.53469 -11.33472 -11.18858 -11.11546 -10.93626 -10.92531 -10.75661 -10.64958 -10.09022 -9.85044 -9.67693 -9.21852 -9.19486 -8.68289 -8.54118 -7.34671 -6.01516 -3.98278 1.64313 2.44372 3.29901 3.37873 3.39783 3.42192 3.77420 4.18705 4.21325 4.44828 4.48441 4.52781 4.57565 4.61959 4.77525 4.81826 4.82988 4.88696 5.02630 5.13851 5.18893 5.23385 5.29694 5.30667 5.33390 5.36042 5.45407 5.47210 5.57631 5.58271 5.65858 5.69898 5.77625 5.90616 5.96802 6.01628 6.25119 6.37124 6.66205 6.74446 6.84686 6.98627 7.01381 7.13722 7.62815 7.86892 7.88514 8.01968 8.05534 8.69389 9.07753 9.60155 11.11815 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.024448 B = 0.001959 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.002890 B =14289.576017 C =15021.836300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.081 3.919 3 O -0.368 6.368 4 C 0.664 3.336 5 O -0.573 6.573 6 N -0.601 5.601 7 C 0.105 3.895 8 C -0.121 4.121 9 C 0.077 3.923 10 H 0.096 0.904 11 N -0.665 5.665 12 C 0.026 3.974 13 C 0.114 3.886 14 H 0.111 0.889 15 O -0.541 6.541 16 C 0.023 3.977 17 N -0.521 5.521 18 C 0.040 3.960 19 C 0.162 3.838 20 C -0.506 4.506 21 H 0.080 0.920 22 C 0.068 3.932 23 N -0.901 5.901 24 Si 0.874 3.126 25 H -0.279 1.279 26 H -0.266 1.266 27 H -0.285 1.285 28 C 0.095 3.905 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.353 0.647 39 H 0.081 0.919 40 H 0.034 0.966 41 H 0.361 0.639 42 H 0.033 0.967 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.045 0.955 46 H 0.012 0.988 47 H 0.030 0.970 48 H -0.019 1.019 49 H 0.263 0.737 50 H 0.080 0.920 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.509 -18.761 -1.695 31.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 O -0.283 6.283 4 C 0.419 3.581 5 O -0.462 6.462 6 N -0.342 5.342 7 C -0.018 4.018 8 C -0.160 4.160 9 C -0.035 4.035 10 H 0.115 0.885 11 N -0.297 5.297 12 C -0.104 4.104 13 C 0.054 3.946 14 H 0.128 0.872 15 O -0.343 6.343 16 C -0.107 4.107 17 N -0.244 5.244 18 C -0.109 4.109 19 C 0.036 3.964 20 C -0.545 4.545 21 H 0.098 0.902 22 C -0.134 4.134 23 N -0.540 5.540 24 Si 0.702 3.298 25 H -0.205 1.205 26 H -0.191 1.191 27 H -0.211 1.211 28 C -0.029 4.029 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.174 0.826 39 H 0.099 0.901 40 H 0.052 0.948 41 H 0.207 0.793 42 H 0.051 0.949 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.064 0.936 46 H 0.030 0.970 47 H 0.048 0.952 48 H -0.001 1.001 49 H 0.073 0.927 50 H 0.099 0.901 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -25.508 -17.829 -1.321 31.150 hybrid contribution -0.392 -0.943 -1.428 1.755 sum -25.900 -18.772 -2.749 32.105 Atomic orbital electron populations 1.21831 0.92404 1.03152 1.03584 1.22978 0.94884 0.78609 1.02852 1.86245 1.21821 1.33270 1.86933 1.17530 0.81201 0.82862 0.76510 1.91013 1.59998 1.38955 1.56207 1.46952 1.08080 1.03054 1.76137 1.22130 0.94675 0.82509 1.02516 1.22680 0.93401 0.96591 1.03312 1.22824 0.91387 0.89203 1.00107 0.88545 1.60459 1.02620 1.59023 1.07551 1.22785 0.91631 0.98009 0.97978 1.21986 0.89667 0.99753 0.83198 0.87162 1.86710 1.90204 1.28302 1.29124 1.22731 0.93375 0.98235 0.96339 1.61864 1.00073 1.04253 1.58257 1.22230 0.94392 0.97889 0.96341 1.20249 0.98377 0.84186 0.93614 1.21028 1.11620 0.91371 1.30441 0.90161 1.24901 0.95496 0.97384 0.95598 1.69891 1.32972 1.07126 1.44017 0.86873 0.82857 0.79387 0.80692 1.20494 1.19113 1.21126 1.23142 0.79524 0.98335 1.01873 0.91416 0.91438 0.89898 0.91149 0.91125 0.90974 0.90890 0.89571 0.89065 0.82597 0.90105 0.94779 0.79338 0.94920 0.91820 0.90361 0.93646 0.96962 0.95250 1.00109 0.92718 0.90146 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 10.29 37.16 0.38 -0.29 16 2 C 0.08 0.59 6.19 37.16 0.23 0.82 16 3 O -0.37 -3.62 9.82 -40.31 -0.40 -4.01 16 4 C 0.66 7.81 8.62 54.05 0.47 8.28 16 5 O -0.57 -8.43 16.39 -19.28 -0.32 -8.75 16 6 N -0.60 -5.80 3.33 -176.31 -0.59 -6.39 16 7 C 0.10 0.73 6.89 -3.06 -0.02 0.71 16 8 C -0.12 -0.82 6.65 -24.90 -0.17 -0.99 16 9 C 0.08 0.62 3.32 -65.58 -0.22 0.40 16 10 H 0.10 0.78 7.92 -51.93 -0.41 0.37 16 11 N -0.67 -6.56 6.38 -104.48 -0.67 -7.23 16 12 C 0.03 0.27 5.23 -3.83 -0.02 0.25 16 13 C 0.11 1.64 3.28 -26.73 -0.09 1.56 16 14 H 0.11 1.95 6.72 -51.93 -0.35 1.60 16 15 O -0.54 -8.07 12.77 -35.23 -0.45 -8.52 16 16 C 0.02 0.36 4.65 -3.82 -0.02 0.34 16 17 N -0.52 -10.72 4.60 -244.38 -1.12 -11.85 16 18 C 0.04 0.75 9.31 60.06 0.56 1.31 16 19 C 0.16 3.93 3.62 -4.98 -0.02 3.91 16 20 C -0.51 -14.57 9.14 -34.44 -0.31 -14.88 16 21 H 0.08 2.52 7.34 -52.49 -0.39 2.14 16 22 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 23 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 24 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 C 0.09 0.85 6.49 -2.54 -0.02 0.83 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.35 3.51 7.86 -39.30 -0.31 3.20 16 39 H 0.08 0.84 8.09 -51.92 -0.42 0.42 16 40 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.36 3.99 9.05 45.56 0.41 4.40 16 42 H 0.03 0.51 8.00 -51.93 -0.42 0.09 16 43 H 0.06 0.85 7.75 -51.93 -0.40 0.45 16 44 H 0.08 1.65 7.01 -51.93 -0.36 1.29 16 45 H 0.04 0.71 7.85 -51.93 -0.41 0.31 16 46 H 0.01 0.22 8.07 -51.93 -0.42 -0.20 16 47 H 0.03 0.73 5.66 -51.92 -0.29 0.43 16 48 H -0.02 -0.45 7.50 -51.93 -0.39 -0.84 16 49 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 50 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 51 H 0.07 0.65 7.80 -51.93 -0.40 0.25 16 LS Contribution 408.97 15.07 6.16 6.16 Total: -1.00 -34.97 408.97 -8.98 -43.95 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -8.37 Total: 2.60 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 0.66 Total: 4.15 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -1.60 Total: -52.56 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -1.16 Total: -21.29 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.97 -8.98 -43.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496451898.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.931 kcal (2) G-P(sol) polarization free energy of solvation -34.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds