Wall clock time and date at job start Tue Mar 31 2020 05:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45203 * 109.47019 * 2 1 4 4 C 1.34634 * 116.99992 * 180.02562 * 3 2 1 5 5 O 1.21509 * 120.00057 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00344 * 179.97438 * 4 3 2 7 7 C 1.47427 * 125.64522 * 359.96976 * 6 4 3 8 8 C 1.54907 * 104.83284 * 155.90929 * 7 6 4 9 9 C 1.55156 * 101.58142 * 37.00718 * 8 7 6 10 10 H 1.09003 * 110.71812 * 83.04435 * 9 8 7 11 11 N 1.46903 * 110.72055 * 206.13395 * 9 8 7 12 12 C 1.46897 * 110.99986 * 202.56156 * 11 9 8 13 13 C 1.53004 * 109.47374 * 180.02562 * 12 11 9 14 14 H 1.08997 * 109.46763 * 59.99814 * 13 12 11 15 15 O 1.42902 * 109.46934 * 300.00257 * 13 12 11 16 16 C 1.53000 * 109.47285 * 180.02562 * 13 12 11 17 17 N 1.46898 * 109.46962 * 182.15729 * 16 13 12 18 18 C 1.46896 * 111.00096 * 199.76394 * 17 16 13 19 19 C 1.46908 * 111.00119 * 75.81227 * 17 16 13 20 20 C 1.50691 * 109.47100 * 189.99969 * 19 17 16 21 21 H 1.08004 * 120.00211 * 0.02562 * 20 19 17 22 22 C 1.37876 * 120.00159 * 179.97438 * 20 19 17 23 23 N 1.31518 * 120.00511 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99737 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.46943 * 269.99946 * 24 22 20 26 26 H 1.48501 * 109.47083 * 29.99689 * 24 22 20 27 27 H 1.48499 * 109.47346 * 149.99778 * 24 22 20 28 28 C 1.47319 * 125.61958 * 180.19781 * 6 4 3 29 29 H 1.09009 * 109.47026 * 300.00417 * 1 2 3 30 30 H 1.08998 * 109.47429 * 60.00077 * 1 2 3 31 31 H 1.08997 * 109.47030 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47175 * 239.99799 * 2 1 3 33 33 H 1.09000 * 109.47283 * 119.99164 * 2 1 3 34 34 H 1.08998 * 110.36517 * 37.06784 * 7 6 4 35 35 H 1.09004 * 110.46012 * 274.79315 * 7 6 4 36 36 H 1.08999 * 111.00516 * 278.93672 * 8 7 6 37 37 H 1.08995 * 111.00700 * 155.08756 * 8 7 6 38 38 H 1.00893 * 111.00424 * 326.51820 * 11 9 8 39 39 H 1.09004 * 109.47568 * 60.00200 * 12 11 9 40 40 H 1.09004 * 109.47301 * 299.99949 * 12 11 9 41 41 H 0.96698 * 113.99523 * 299.99903 * 15 13 12 42 42 H 1.08999 * 109.47172 * 62.15942 * 16 13 12 43 43 H 1.09002 * 109.47079 * 302.15731 * 16 13 12 44 44 H 1.08995 * 109.47184 * 291.01485 * 18 17 16 45 45 H 1.09003 * 109.46648 * 51.01343 * 18 17 16 46 46 H 1.09000 * 109.47354 * 171.01071 * 18 17 16 47 47 H 1.09000 * 109.46782 * 69.99621 * 19 17 16 48 48 H 1.09000 * 109.46618 * 310.00237 * 19 17 16 49 49 H 0.97002 * 119.99877 * 180.02562 * 23 22 20 50 50 H 1.08996 * 110.06691 * 61.67766 * 28 6 4 51 51 H 1.09007 * 109.84644 * 300.41603 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3487 1.5454 -0.0005 5 8 4.0889 0.5818 -0.0005 6 7 3.8639 2.7908 -0.0011 7 6 3.0853 4.0427 -0.0018 8 6 4.0365 5.1018 0.6090 9 6 5.4056 4.6651 0.0239 10 1 5.5391 5.0619 -0.9825 11 7 6.5051 5.0928 0.8992 12 6 7.7679 5.1800 0.1538 13 6 8.8870 5.6267 1.0968 14 1 8.9915 4.9030 1.9051 15 8 8.5667 6.9078 1.6429 16 6 10.2021 5.7182 0.3202 17 7 11.2863 6.0969 1.2363 18 6 12.4320 6.6447 0.4980 19 6 11.6932 4.9578 2.0699 20 6 12.6232 5.4362 3.1548 21 1 12.8855 6.4820 3.2190 22 6 13.1386 4.5391 4.0662 23 7 13.9499 4.9567 5.0134 24 14 12.6844 2.7305 3.9557 25 1 11.4672 2.4754 4.7672 26 1 12.4190 2.3725 2.5392 27 1 13.8060 1.9060 4.4729 28 6 5.2985 3.1259 -0.0058 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 2.1925 3.9345 0.6141 35 1 2.8117 4.3207 -1.0197 36 1 4.0400 5.0424 1.6974 37 1 3.7708 6.1046 0.2750 38 1 6.2893 5.9699 1.3488 39 1 7.6634 5.9035 -0.6548 40 1 8.0125 4.2027 -0.2624 41 1 8.4587 7.6025 0.9790 42 1 10.1097 6.4698 -0.4637 43 1 10.4271 4.7507 -0.1287 44 1 12.9065 5.8503 -0.0780 45 1 12.0879 7.4278 -0.1778 46 1 13.1517 7.0627 1.2019 47 1 12.2048 4.2198 1.4520 48 1 10.8108 4.5046 2.5215 49 1 14.3127 4.3254 5.6544 50 1 5.7699 2.7389 -0.9092 51 1 5.7801 2.7037 0.8762 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496451901.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:39 Heat of formation + Delta-G solvation = -113.232323 kcal Electronic energy + Delta-G solvation = -28482.008977 eV Core-core repulsion = 24416.936826 eV Total energy + Delta-G solvation = -4065.072151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.82994 -39.12983 -38.09100 -36.64836 -35.86879 -34.64197 -32.41051 -32.20084 -31.16365 -29.79366 -28.50611 -27.85727 -25.70237 -24.21375 -23.28875 -22.88941 -21.65030 -21.27804 -20.50692 -19.95399 -18.50876 -17.43799 -17.07622 -16.94258 -16.48161 -16.20740 -15.76894 -15.03289 -14.79582 -14.69836 -14.55459 -14.31698 -14.11314 -13.92308 -13.61201 -13.47334 -13.15696 -13.12143 -12.91667 -12.71169 -12.33841 -12.24014 -12.16316 -12.01423 -11.93842 -11.67619 -11.56536 -11.28482 -11.19354 -11.07704 -10.85625 -10.82837 -10.77122 -10.46822 -10.19381 -9.89169 -9.66879 -9.19242 -9.09355 -8.70335 -8.51493 -7.33198 -6.00310 -3.97136 1.71885 2.55169 3.33469 3.40317 3.42054 3.51165 3.76532 4.05699 4.21708 4.46588 4.54421 4.56879 4.58846 4.70483 4.79457 4.84301 4.89543 4.97805 5.10215 5.15455 5.18728 5.22807 5.32590 5.34238 5.35994 5.38452 5.48145 5.52447 5.58305 5.62332 5.63896 5.71076 5.83709 5.91220 6.01007 6.05235 6.25772 6.37938 6.66123 6.76826 6.87581 6.99575 7.08869 7.18887 7.63059 7.87148 7.98680 8.01923 8.06090 8.70243 9.08533 9.61505 11.12861 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.014398 B = 0.002252 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.200040 B =12432.305154 C =13756.240717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.081 3.919 3 O -0.370 6.370 4 C 0.664 3.336 5 O -0.569 6.569 6 N -0.603 5.603 7 C 0.107 3.893 8 C -0.136 4.136 9 C 0.075 3.925 10 H 0.064 0.936 11 N -0.673 5.673 12 C 0.027 3.973 13 C 0.115 3.885 14 H 0.109 0.891 15 O -0.539 6.539 16 C 0.023 3.977 17 N -0.521 5.521 18 C 0.040 3.960 19 C 0.162 3.838 20 C -0.506 4.506 21 H 0.080 0.920 22 C 0.067 3.933 23 N -0.901 5.901 24 Si 0.873 3.127 25 H -0.274 1.274 26 H -0.269 1.269 27 H -0.286 1.286 28 C 0.133 3.867 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.357 0.643 39 H 0.033 0.967 40 H 0.079 0.921 41 H 0.360 0.640 42 H 0.063 0.937 43 H 0.033 0.967 44 H 0.012 0.988 45 H 0.044 0.956 46 H 0.078 0.922 47 H -0.014 1.014 48 H 0.025 0.975 49 H 0.263 0.737 50 H 0.069 0.931 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.521 -1.869 -15.299 31.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.007 3.993 3 O -0.285 6.285 4 C 0.419 3.581 5 O -0.458 6.458 6 N -0.344 5.344 7 C -0.016 4.016 8 C -0.174 4.174 9 C -0.036 4.036 10 H 0.082 0.918 11 N -0.306 5.306 12 C -0.103 4.103 13 C 0.055 3.945 14 H 0.127 0.873 15 O -0.342 6.342 16 C -0.107 4.107 17 N -0.245 5.245 18 C -0.108 4.108 19 C 0.035 3.965 20 C -0.544 4.544 21 H 0.098 0.902 22 C -0.134 4.134 23 N -0.540 5.540 24 Si 0.700 3.300 25 H -0.200 1.200 26 H -0.194 1.194 27 H -0.212 1.212 28 C 0.011 3.989 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.178 0.822 39 H 0.051 0.949 40 H 0.098 0.902 41 H 0.205 0.795 42 H 0.081 0.919 43 H 0.051 0.949 44 H 0.030 0.970 45 H 0.063 0.937 46 H 0.096 0.904 47 H 0.004 0.996 48 H 0.043 0.957 49 H 0.073 0.927 50 H 0.087 0.913 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -27.271 -2.972 -14.020 30.808 hybrid contribution 0.058 -0.790 -1.630 1.812 sum -27.214 -3.762 -15.650 31.617 Atomic orbital electron populations 1.21827 0.92470 1.03128 1.03505 1.22969 0.94799 0.78646 1.02911 1.86222 1.21907 1.33257 1.87084 1.17467 0.81147 0.82830 0.76661 1.91027 1.59925 1.38933 1.55901 1.47061 1.08230 1.02940 1.76206 1.22293 0.95209 0.82802 1.01286 1.23016 0.93468 0.98598 1.02364 1.22509 0.91155 0.93995 0.95903 0.91807 1.60204 1.01255 1.38205 1.30967 1.22781 0.90601 1.01459 0.95431 1.21978 0.90061 0.86166 0.96322 0.87294 1.86719 1.92499 1.18259 1.36677 1.22736 0.93864 0.99162 0.94961 1.61863 1.07864 1.34217 1.20518 1.22226 0.93891 0.97605 0.97096 1.20241 0.95602 0.87818 0.92796 1.21011 1.25850 0.97028 1.10522 0.90166 1.24900 0.94897 0.98471 0.95120 1.69896 1.32524 1.34838 1.16758 0.86895 0.78435 0.85893 0.78730 1.19990 1.19364 1.21239 1.22055 0.78436 0.95082 1.03355 0.91434 0.91507 0.89923 0.91168 0.91068 0.89866 0.91086 0.89061 0.89372 0.82226 0.94874 0.90223 0.79482 0.91860 0.94899 0.96965 0.93673 0.90353 0.99597 0.95716 0.92721 0.91306 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.29 37.16 0.38 -0.36 16 2 C 0.08 0.65 6.19 37.16 0.23 0.88 16 3 O -0.37 -3.87 9.75 -40.31 -0.39 -4.26 16 4 C 0.66 8.47 8.62 54.06 0.47 8.93 16 5 O -0.57 -9.16 16.46 -19.28 -0.32 -9.47 16 6 N -0.60 -6.37 3.33 -176.06 -0.59 -6.95 16 7 C 0.11 0.75 6.92 -2.53 -0.02 0.73 16 8 C -0.14 -0.86 6.50 -24.58 -0.16 -1.02 16 9 C 0.08 0.61 3.25 -65.88 -0.21 0.40 16 10 H 0.06 0.46 7.86 -51.93 -0.41 0.05 16 11 N -0.67 -6.73 6.30 -104.79 -0.66 -7.39 16 12 C 0.03 0.29 5.26 -3.82 -0.02 0.27 16 13 C 0.11 1.66 3.31 -26.73 -0.09 1.58 16 14 H 0.11 1.95 6.73 -51.93 -0.35 1.60 16 15 O -0.54 -7.94 12.58 -35.23 -0.44 -8.39 16 16 C 0.02 0.36 4.65 -3.82 -0.02 0.34 16 17 N -0.52 -10.76 4.59 -244.37 -1.12 -11.88 16 18 C 0.04 0.76 9.31 60.06 0.56 1.32 16 19 C 0.16 3.97 3.62 -4.98 -0.02 3.95 16 20 C -0.51 -14.67 9.13 -34.44 -0.31 -14.98 16 21 H 0.08 2.53 7.34 -52.48 -0.39 2.14 16 22 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 23 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 24 Si 0.87 22.08 27.47 -169.99 -4.67 17.41 16 25 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.27 -6.55 6.54 56.52 0.37 -6.18 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 C 0.13 1.40 6.63 -2.90 -0.02 1.38 16 29 H 0.07 0.33 8.14 -51.92 -0.42 -0.10 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.54 8.04 -51.93 -0.42 0.12 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.36 3.40 7.85 -39.30 -0.31 3.10 16 39 H 0.03 0.29 8.08 -51.93 -0.42 -0.13 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.36 3.80 9.04 45.56 0.41 4.21 16 42 H 0.06 0.83 7.75 -51.93 -0.40 0.43 16 43 H 0.03 0.52 8.00 -51.93 -0.42 0.10 16 44 H 0.01 0.22 8.08 -51.93 -0.42 -0.20 16 45 H 0.04 0.70 7.85 -51.93 -0.41 0.29 16 46 H 0.08 1.65 7.01 -51.93 -0.36 1.29 16 47 H -0.01 -0.34 7.13 -51.93 -0.37 -0.71 16 48 H 0.02 0.62 6.03 -51.93 -0.31 0.30 16 49 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 50 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.09 1.13 8.03 -51.92 -0.42 0.71 16 LS Contribution 408.90 15.07 6.16 6.16 Total: -1.00 -35.69 408.90 -8.96 -44.66 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -8.38 Total: 2.13 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 0.67 Total: 5.32 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -1.59 Total: -53.56 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -1.15 Total: -22.12 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.69 -8.96 -44.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496451901.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.574 kcal (2) G-P(sol) polarization free energy of solvation -35.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds