Wall clock time and date at job start Tue Mar 31 2020 05:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34634 * 117.00027 * 2 1 4 4 O 1.21506 * 120.00045 * 0.02562 * 3 2 1 5 5 N 1.34782 * 120.00185 * 180.02562 * 3 2 1 6 6 C 1.46916 * 120.63369 * 180.02562 * 5 3 2 7 7 C 1.53192 * 108.89396 * 126.46208 * 6 5 3 8 8 C 1.53037 * 109.31141 * 54.56307 * 7 6 5 9 9 N 1.46902 * 109.46277 * 178.61296 * 8 7 6 10 10 C 1.46897 * 111.00607 * 205.00353 * 9 8 7 11 11 C 1.52994 * 109.47349 * 180.02562 * 10 9 8 12 12 H 1.09008 * 109.46826 * 304.99382 * 11 10 9 13 13 O 1.42897 * 109.47689 * 64.99615 * 11 10 9 14 14 C 1.52999 * 109.47143 * 184.99840 * 11 10 9 15 15 N 1.46901 * 109.47207 * 178.50403 * 14 11 10 16 16 C 1.46895 * 110.99908 * 164.00920 * 15 14 11 17 17 C 1.46897 * 111.00144 * 287.96269 * 15 14 11 18 18 C 1.50698 * 109.47069 * 169.99788 * 17 15 14 19 19 H 1.07999 * 120.00019 * 0.02562 * 18 17 15 20 20 C 1.37880 * 119.99962 * 179.97438 * 18 17 15 21 21 N 1.31512 * 120.00289 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99997 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.46956 * 90.00356 * 22 20 18 24 24 H 1.48504 * 109.47181 * 210.00630 * 22 20 18 25 25 H 1.48505 * 109.47217 * 329.99790 * 22 20 18 26 26 C 1.53038 * 109.53934 * 298.63479 * 8 7 6 27 27 C 1.46968 * 120.64728 * 359.82270 * 5 3 2 28 28 H 1.09002 * 109.47356 * 299.99626 * 1 2 3 29 29 H 1.09000 * 109.47332 * 59.99198 * 1 2 3 30 30 H 1.08997 * 109.47220 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.58817 * 6.60688 * 6 5 3 32 32 H 1.09004 * 109.58860 * 246.31985 * 6 5 3 33 33 H 1.08997 * 109.50079 * 174.51621 * 7 6 5 34 34 H 1.08999 * 109.49741 * 294.61237 * 7 6 5 35 35 H 1.08999 * 109.46077 * 58.64400 * 8 7 6 36 36 H 1.00907 * 110.99771 * 81.04217 * 9 8 7 37 37 H 1.09007 * 109.46682 * 299.99793 * 10 9 8 38 38 H 1.08994 * 109.47109 * 59.99340 * 10 9 8 39 39 H 0.96701 * 113.99961 * 59.99495 * 13 11 10 40 40 H 1.09000 * 109.47220 * 298.50454 * 14 11 10 41 41 H 1.09003 * 109.46920 * 58.50807 * 14 11 10 42 42 H 1.09009 * 109.47260 * 65.48947 * 16 15 14 43 43 H 1.09003 * 109.47301 * 185.48731 * 16 15 14 44 44 H 1.09002 * 109.47488 * 305.48644 * 16 15 14 45 45 H 1.08996 * 109.47353 * 290.00144 * 17 15 14 46 46 H 1.09003 * 109.46948 * 49.99842 * 17 15 14 47 47 H 0.96992 * 120.00565 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.49465 * 181.31459 * 26 8 7 49 49 H 1.08997 * 109.49948 * 301.37778 * 26 8 7 50 50 H 1.08997 * 109.46426 * 113.75241 * 27 5 3 51 51 H 1.08992 * 109.71532 * 353.46413 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2186 0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.0906 2.5718 0.0000 7 6 5.0842 2.6110 1.1653 8 6 6.0261 1.4087 1.0680 9 7 7.0016 1.4610 2.1651 10 6 8.2301 0.7371 1.8124 11 6 9.2192 0.8132 2.9771 12 1 9.3904 1.8570 3.2408 13 8 8.6819 0.1190 4.1046 14 6 10.5436 0.1677 2.5645 15 7 11.5050 0.2726 3.6703 16 6 12.6353 -0.6448 3.4740 17 6 11.9718 1.6560 3.8325 18 6 12.7563 1.7744 5.1138 19 1 12.8946 0.9085 5.7442 20 6 13.2984 2.9879 5.4806 21 7 13.1304 4.0422 4.7127 22 14 14.2714 3.1345 7.0684 23 1 15.7049 2.8572 6.7979 24 1 14.1271 4.5088 7.6124 25 1 13.7556 2.1541 8.0575 26 6 5.2157 0.1143 1.1676 27 6 4.2235 0.0467 0.0028 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.3563 3.3686 0.1190 32 1 4.6251 2.7049 -0.9406 33 1 5.6645 3.5325 1.1178 34 1 4.5401 2.5714 2.1089 35 1 6.5515 1.4354 0.1134 36 1 6.6035 1.1027 3.0203 37 1 7.9907 -0.3064 1.6071 38 1 8.6761 1.1886 0.9263 39 1 8.5043 -0.8175 3.9418 40 1 10.3771 -0.8828 2.3262 41 1 10.9403 0.6806 1.6883 42 1 13.2033 -0.3388 2.5953 43 1 13.2813 -0.6184 4.3515 44 1 12.2601 -1.6580 3.3294 45 1 12.6089 1.9256 2.9902 46 1 11.1137 2.3272 3.8685 47 1 13.5114 4.8960 4.9708 48 1 5.8896 -0.7412 1.1217 49 1 4.6708 0.0979 2.1115 50 1 4.7691 -0.0290 -0.9377 51 1 3.5787 -0.8238 0.1223 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496792590.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:48 Heat of formation + Delta-G solvation = -121.746254 kcal Electronic energy + Delta-G solvation = -28698.421241 eV Core-core repulsion = 24632.979898 eV Total energy + Delta-G solvation = -4065.441343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.99053 -39.10939 -37.98114 -36.69760 -35.78719 -34.90234 -32.46266 -31.90754 -31.38169 -29.33180 -27.94844 -27.27072 -25.86982 -24.22879 -23.72361 -23.13320 -21.62667 -21.55459 -20.21917 -19.97467 -18.54627 -17.39377 -16.91662 -16.55593 -16.12704 -15.77268 -15.44403 -15.19241 -14.83164 -14.78543 -14.61290 -14.41255 -14.34741 -13.89388 -13.66748 -13.41839 -13.37361 -12.94509 -12.78937 -12.54759 -12.43551 -12.08707 -11.91321 -11.87353 -11.65701 -11.38106 -11.20314 -11.15239 -11.13550 -10.90981 -10.88700 -10.76946 -10.68802 -10.63687 -10.32081 -9.72703 -9.58978 -9.19472 -9.09642 -8.44394 -8.38347 -7.19110 -5.98134 -3.98572 1.79002 2.46495 3.34985 3.41215 3.46261 3.50048 3.89147 4.35628 4.46573 4.51888 4.61791 4.72672 4.76930 4.83160 4.84705 4.88897 4.96917 5.05724 5.11629 5.19580 5.29347 5.32191 5.35541 5.38014 5.43421 5.51764 5.57900 5.61287 5.69835 5.77350 5.80999 5.92649 5.97762 6.04256 6.09136 6.13130 6.34164 6.54389 6.71904 6.93562 6.95320 7.31131 7.34247 7.35500 7.83279 7.91136 8.07019 8.13947 8.23640 8.58989 9.08398 9.65055 11.12936 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.024147 B = 0.001935 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.293606 B =14465.644667 C =15017.893045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.372 6.372 3 C 0.649 3.351 4 O -0.574 6.574 5 N -0.592 5.592 6 C 0.127 3.873 7 C -0.124 4.124 8 C 0.087 3.913 9 N -0.677 5.677 10 C 0.031 3.969 11 C 0.114 3.886 12 H 0.113 0.887 13 O -0.541 6.541 14 C 0.027 3.973 15 N -0.531 5.531 16 C 0.040 3.960 17 C 0.192 3.808 18 C -0.504 4.504 19 H 0.062 0.938 20 C 0.054 3.946 21 N -0.899 5.899 22 Si 0.897 3.103 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.273 1.273 26 C -0.166 4.166 27 C 0.117 3.883 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.349 0.651 37 H 0.028 0.972 38 H 0.078 0.922 39 H 0.358 0.642 40 H 0.058 0.942 41 H 0.031 0.969 42 H 0.010 0.990 43 H 0.073 0.927 44 H 0.042 0.958 45 H -0.012 1.012 46 H 0.033 0.967 47 H 0.261 0.739 48 H 0.076 0.924 49 H 0.071 0.929 50 H 0.071 0.929 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.486 -10.693 -13.256 27.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.286 6.286 3 C 0.403 3.597 4 O -0.463 6.463 5 N -0.333 5.333 6 C 0.005 3.995 7 C -0.162 4.162 8 C -0.023 4.023 9 N -0.308 5.308 10 C -0.099 4.099 11 C 0.054 3.946 12 H 0.131 0.869 13 O -0.343 6.343 14 C -0.103 4.103 15 N -0.255 5.255 16 C -0.109 4.109 17 C 0.067 3.933 18 C -0.543 4.543 19 H 0.081 0.919 20 C -0.147 4.147 21 N -0.539 5.539 22 Si 0.725 3.275 23 H -0.209 1.209 24 H -0.213 1.213 25 H -0.198 1.198 26 C -0.206 4.206 27 C -0.007 4.007 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.169 0.831 37 H 0.046 0.954 38 H 0.096 0.904 39 H 0.203 0.797 40 H 0.076 0.924 41 H 0.049 0.951 42 H 0.028 0.972 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.006 0.994 46 H 0.051 0.949 47 H 0.070 0.930 48 H 0.095 0.905 49 H 0.090 0.910 50 H 0.090 0.910 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.630 -9.133 -12.726 26.706 hybrid contribution 0.594 -1.051 -0.234 1.230 sum -21.036 -10.185 -12.961 26.725 Atomic orbital electron populations 1.23198 0.74414 1.03467 1.02769 1.86226 1.24164 1.31106 1.87090 1.18046 0.83195 0.82129 0.76314 1.90993 1.64204 1.34940 1.56142 1.46973 1.01807 1.08777 1.75760 1.21735 0.95314 0.83384 0.99050 1.21944 0.96462 0.99503 0.98325 1.21586 0.92043 0.93043 0.95649 1.60441 1.05358 1.59515 1.05463 1.22713 0.91672 0.95786 0.99744 1.22016 0.89490 0.98408 0.84692 0.86946 1.86713 1.85187 1.24825 1.37623 1.22658 0.94726 0.99173 0.93745 1.62049 1.14125 1.10381 1.38965 1.22195 0.93674 0.94590 1.00403 1.19781 0.94905 0.82433 0.96152 1.21147 1.31855 0.95291 1.05983 0.91941 1.24987 0.96710 0.95765 0.97239 1.69951 1.45773 1.00372 1.37798 0.86505 0.80029 0.77311 0.83619 1.20856 1.21268 1.19773 1.22704 0.98662 0.99939 0.99282 1.21666 0.93659 0.86537 0.98796 0.91813 0.91875 0.87962 0.88369 0.90817 0.89105 0.91226 0.90276 0.83089 0.95353 0.90391 0.79691 0.92362 0.95110 0.97177 0.90804 0.93966 0.99436 0.94883 0.92986 0.90501 0.91009 0.91033 0.89044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.35 10.56 101.05 1.07 1.42 16 2 O -0.37 -3.43 9.21 -40.31 -0.37 -3.80 16 3 C 0.65 7.20 8.43 54.06 0.46 7.65 16 4 O -0.57 -7.99 15.54 -19.28 -0.30 -8.29 16 5 N -0.59 -5.38 2.98 -178.56 -0.53 -5.92 16 6 C 0.13 1.07 6.43 -3.72 -0.02 1.04 16 7 C -0.12 -1.08 5.69 -26.61 -0.15 -1.24 16 8 C 0.09 0.76 2.43 -67.67 -0.16 0.59 16 9 N -0.68 -7.54 6.25 -106.69 -0.67 -8.21 16 10 C 0.03 0.36 5.16 -3.83 -0.02 0.34 16 11 C 0.11 1.78 3.23 -26.73 -0.09 1.69 16 12 H 0.11 2.21 6.56 -51.92 -0.34 1.87 16 13 O -0.54 -8.62 12.75 -35.23 -0.45 -9.06 16 14 C 0.03 0.45 4.63 -3.82 -0.02 0.43 16 15 N -0.53 -11.36 4.60 -244.37 -1.12 -12.49 16 16 C 0.04 0.77 9.32 60.06 0.56 1.33 16 17 C 0.19 5.04 4.57 -4.98 -0.02 5.01 16 18 C -0.50 -14.41 8.54 -34.44 -0.29 -14.70 16 19 H 0.06 1.78 7.10 -52.49 -0.37 1.40 16 20 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 22 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 26 C -0.17 -1.20 5.33 -26.63 -0.14 -1.35 16 27 C 0.12 0.81 6.44 -3.71 -0.02 0.79 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.94 7.00 -51.93 -0.36 0.58 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.67 7.80 -51.93 -0.40 0.27 16 36 H 0.35 4.01 8.04 -39.29 -0.32 3.70 16 37 H 0.03 0.27 7.41 -51.92 -0.38 -0.11 16 38 H 0.08 0.90 8.05 -51.93 -0.42 0.48 16 39 H 0.36 4.22 9.05 45.56 0.41 4.63 16 40 H 0.06 0.82 7.88 -51.93 -0.41 0.41 16 41 H 0.03 0.53 8.05 -51.93 -0.42 0.11 16 42 H 0.01 0.19 8.13 -51.92 -0.42 -0.23 16 43 H 0.07 1.53 6.90 -51.93 -0.36 1.17 16 44 H 0.04 0.68 7.97 -51.93 -0.41 0.26 16 45 H -0.01 -0.34 8.11 -51.93 -0.42 -0.76 16 46 H 0.03 0.93 6.38 -51.93 -0.33 0.60 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.08 0.51 7.42 -51.93 -0.39 0.13 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 50 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.09 0.61 6.94 -51.93 -0.36 0.25 16 LS Contribution 403.91 15.07 6.09 6.09 Total: -1.00 -34.25 403.91 -8.83 -43.07 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -8.22 Total: 3.43 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 1.04 Total: 4.48 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -1.59 Total: -52.90 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -1.12 Total: -21.15 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.25 -8.83 -43.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496792590.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.675 kcal (2) G-P(sol) polarization free energy of solvation -34.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds