Wall clock time and date at job start Tue Mar 31 2020 06:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99876 * 2 1 4 4 C 1.50701 * 109.47070 * 270.00147 * 3 2 1 5 5 H 1.07996 * 120.00372 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00288 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99542 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00278 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47024 * 90.00307 * 8 6 4 10 10 H 1.48501 * 109.46965 * 209.99940 * 8 6 4 11 11 H 1.48501 * 109.47317 * 330.00289 * 8 6 4 12 12 C 1.34781 * 120.00474 * 180.02562 * 2 1 3 13 13 O 1.21277 * 120.00315 * 179.97438 * 12 2 1 14 14 C 1.50698 * 119.99654 * 0.02562 * 12 2 1 15 15 N 1.46502 * 109.46987 * 179.97438 * 14 12 2 16 16 S 1.65601 * 119.99902 * 164.99646 * 15 14 12 17 17 O 1.42107 * 106.40351 * 311.46098 * 16 15 14 18 18 O 1.42095 * 106.40404 * 178.53967 * 16 15 14 19 19 C 1.76198 * 107.21872 * 64.99881 * 16 15 14 20 20 C 1.38271 * 119.99027 * 270.25597 * 19 16 15 21 21 C 1.38219 * 120.05279 * 180.25746 * 20 19 16 22 22 C 1.38227 * 120.02402 * 359.48356 * 21 20 19 23 23 C 1.38435 * 119.97416 * 0.26250 * 22 21 20 24 24 F 1.35097 * 120.02437 * 179.97438 * 23 22 21 25 25 C 1.38179 * 119.98426 * 90.00066 * 19 16 15 26 26 H 1.08999 * 109.46885 * 269.99944 * 1 2 3 27 27 H 1.08992 * 109.47346 * 30.00156 * 1 2 3 28 28 H 1.09006 * 109.47094 * 149.99989 * 1 2 3 29 29 H 1.09000 * 109.47311 * 29.99658 * 3 2 1 30 30 H 1.09001 * 109.47554 * 150.00340 * 3 2 1 31 31 H 0.97001 * 119.99669 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47428 * 59.99376 * 14 12 2 33 33 H 1.09000 * 109.47035 * 299.99849 * 14 12 2 34 34 H 0.96997 * 120.00291 * 344.99695 * 15 14 12 35 35 H 1.08000 * 119.97479 * 0.02562 * 20 19 16 36 36 H 1.08002 * 119.99072 * 179.76964 * 21 20 19 37 37 H 1.07999 * 120.01289 * 180.23490 * 22 21 20 38 38 H 1.07994 * 120.01414 * 0.02562 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1259 2.8780 -1.6729 7 7 3.5532 3.6182 -0.6732 8 14 3.4377 3.4169 -3.4340 9 1 2.3075 4.2592 -3.9014 10 1 4.6977 4.2005 -3.4961 11 1 3.5559 2.2196 -4.3045 12 6 2.1390 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3855 -2.4723 -0.0017 15 7 2.3376 -3.5858 -0.0027 16 16 1.8228 -5.1156 0.3672 17 8 1.0597 -5.0047 1.5609 18 8 2.9583 -5.9613 0.2465 19 6 0.6991 -5.6079 -0.8975 20 6 -0.6506 -5.3379 -0.7663 21 6 -1.5340 -5.7282 -1.7552 22 6 -1.0674 -6.3796 -2.8816 23 6 0.2844 -6.6457 -3.0165 24 9 0.7414 -7.2827 -4.1167 25 6 1.1678 -6.2590 -2.0226 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6083 2.0284 0.5138 30 1 3.1499 1.1385 0.5138 31 1 4.0300 4.4441 -0.8505 32 1 0.7591 -2.5294 -0.8919 33 1 0.7585 -2.5306 0.8880 34 1 3.2695 -3.4269 -0.2200 35 1 -1.0155 -4.8250 0.1113 36 1 -2.5885 -5.5202 -1.6499 37 1 -1.7573 -6.6811 -3.6559 38 1 2.2225 -6.4664 -2.1266 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514829120.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:39 Heat of formation + Delta-G solvation = -118.982039 kcal Electronic energy + Delta-G solvation = -25705.840221 eV Core-core repulsion = 21590.426459 eV Total energy + Delta-G solvation = -4115.413763 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.32308 -39.40210 -39.24072 -37.44826 -36.06704 -35.26295 -34.50196 -32.66718 -31.91887 -31.03104 -28.59672 -26.83560 -25.55286 -24.05381 -23.27142 -22.68094 -19.95671 -19.03751 -18.70492 -17.70996 -17.04223 -16.75289 -16.66884 -16.38923 -16.15458 -16.04404 -15.82523 -15.40099 -15.04779 -14.67294 -14.41331 -13.85945 -13.70602 -13.47923 -13.06390 -12.78415 -12.75603 -12.37952 -12.34265 -12.27806 -12.20126 -12.12092 -12.11794 -11.89809 -11.27102 -11.16235 -10.96784 -10.64558 -10.23452 -10.00552 -9.80762 -9.69072 -9.32458 -9.14626 -8.50019 -7.80240 -6.11031 -4.16360 0.00938 0.29471 0.62205 2.62270 2.94422 3.17348 3.25632 3.33131 3.36942 3.51334 3.67992 3.78044 4.04036 4.35269 4.37215 4.39056 4.52669 4.74317 4.80108 4.99797 5.12073 5.23142 5.24796 5.35621 5.44642 5.46531 5.54561 5.61447 5.63836 5.82474 6.10242 6.26647 6.87933 6.94610 7.34156 7.40169 7.84371 8.14384 8.23186 8.76096 8.91710 9.48934 10.97127 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.014136 B = 0.003201 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.241605 B = 8743.829706 C = 9483.851097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.597 5.597 3 C 0.245 3.755 4 C -0.530 4.530 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.503 3.497 13 O -0.532 6.532 14 C 0.094 3.906 15 N -1.099 6.099 16 S 2.702 3.298 17 O -0.950 6.950 18 O -0.951 6.951 19 C -0.652 4.652 20 C -0.033 4.033 21 C -0.110 4.110 22 C -0.100 4.100 23 C 0.080 3.920 24 F -0.134 7.134 25 C -0.051 4.051 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.264 0.736 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.431 0.569 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.277 -18.849 -1.435 23.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.330 5.330 3 C 0.126 3.874 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.287 3.713 13 O -0.409 6.409 14 C -0.036 4.036 15 N -0.864 5.864 16 S 2.789 3.211 17 O -0.940 6.940 18 O -0.942 6.942 19 C -0.737 4.737 20 C -0.052 4.052 21 C -0.129 4.129 22 C -0.119 4.119 23 C 0.060 3.940 24 F -0.112 7.112 25 C -0.071 4.071 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.123 0.877 34 H 0.270 0.730 35 H 0.168 0.832 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.457 -19.184 -0.684 22.883 hybrid contribution 0.066 0.458 -2.110 2.160 sum -12.390 -18.726 -2.794 22.627 Atomic orbital electron populations 1.21737 0.81129 1.02870 1.00929 1.48139 1.06382 1.07653 1.70797 1.19356 0.92663 0.77740 0.97674 1.21406 1.36887 1.06389 0.92173 0.92418 1.24939 0.95258 0.96370 0.97493 1.69931 1.38172 1.14309 1.30781 0.86483 0.77738 0.78593 0.84505 1.20618 1.21037 1.19927 1.19998 0.88208 0.84844 0.78202 1.90674 1.13576 1.86524 1.50131 1.21224 0.91806 0.86883 1.03651 1.55206 1.20258 1.22583 1.88381 1.01778 0.73338 0.72173 0.73788 1.93602 1.72625 1.85944 1.41838 1.93613 1.49072 1.64744 1.86728 1.31102 1.11498 1.13921 1.17157 1.21094 0.90959 0.94536 0.98601 1.21214 1.00811 0.97889 0.92952 1.21523 0.93922 0.97300 0.99122 1.17730 0.92910 0.98374 0.85029 1.91545 1.89497 1.79350 1.50835 1.20927 1.01060 0.94219 0.90899 0.93131 0.90326 0.92402 0.94684 0.93638 0.92617 0.89187 0.87668 0.72950 0.83190 0.83718 0.83839 0.82786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.05 10.24 59.85 0.61 1.67 16 2 N -0.60 -11.63 2.86 -182.96 -0.52 -12.15 16 3 C 0.24 6.10 5.16 -5.19 -0.03 6.07 16 4 C -0.53 -14.44 9.39 -34.44 -0.32 -14.76 16 5 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 12 C 0.50 9.52 7.74 -10.98 -0.09 9.44 16 13 O -0.53 -12.35 15.31 5.56 0.09 -12.26 16 14 C 0.09 1.21 5.25 -5.19 -0.03 1.18 16 15 N -1.10 -13.99 5.93 -11.66 -0.07 -14.06 16 16 S 2.70 31.62 5.74 -107.50 -0.62 31.01 16 17 O -0.95 -12.68 16.76 -57.17 -0.96 -13.63 16 18 O -0.95 -13.51 17.28 -57.17 -0.99 -14.50 16 19 C -0.65 -6.37 5.94 -39.59 -0.24 -6.61 16 20 C -0.03 -0.26 9.52 -39.58 -0.38 -0.63 16 21 C -0.11 -0.71 10.04 -39.59 -0.40 -1.10 16 22 C -0.10 -0.72 10.03 -39.51 -0.40 -1.12 16 23 C 0.08 0.75 7.30 -39.42 -0.29 0.47 16 24 F -0.13 -1.38 17.27 2.25 0.04 -1.34 16 25 C -0.05 -0.51 9.50 -39.51 -0.38 -0.89 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 28 H 0.06 0.58 6.44 -51.93 -0.33 0.24 16 29 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 30 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.09 0.89 7.40 -51.93 -0.38 0.50 16 33 H 0.11 1.10 7.72 -51.93 -0.40 0.70 16 34 H 0.43 5.92 7.70 -34.47 -0.27 5.66 16 35 H 0.15 0.91 7.62 -52.49 -0.40 0.51 16 36 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.15 1.44 7.62 -52.49 -0.40 1.04 16 LS Contribution 349.31 15.07 5.26 5.26 Total: -1.00 -36.12 349.31 -8.29 -44.41 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -4.22 Total: 0.83 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -2.02 Total: -4.67 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: 0.14 Total: -51.38 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -1.86 Total: -40.39 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 31.62 SS G_CDS: -0.62 Total: 31.01 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.12 -8.29 -44.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514829120.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.572 kcal (2) G-P(sol) polarization free energy of solvation -36.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds