Wall clock time and date at job start Tue Mar 31 2020 06:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47186 * 2 1 4 4 C 1.46503 * 119.99657 * 284.15567 * 3 2 1 5 5 C 1.50700 * 109.46687 * 269.99463 * 4 3 2 6 6 H 1.08005 * 120.00432 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00012 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99851 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00150 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47186 * 90.00468 * 9 7 5 11 11 H 1.48506 * 109.46952 * 210.00415 * 9 7 5 12 12 H 1.48498 * 109.47149 * 330.00113 * 9 7 5 13 13 C 1.34779 * 120.00193 * 104.15204 * 3 2 1 14 14 O 1.21564 * 119.99969 * 186.65452 * 13 3 2 15 15 C 1.47693 * 119.99642 * 6.65316 * 13 3 2 16 16 C 1.39660 * 120.16789 * 326.44017 * 15 13 3 17 17 C 1.37855 * 119.87696 * 179.97438 * 16 15 13 18 18 C 1.38463 * 120.21992 * 359.97438 * 17 16 15 19 19 S 1.76197 * 119.83188 * 180.02562 * 18 17 16 20 20 N 1.65598 * 107.21759 * 89.99683 * 19 18 17 21 21 O 1.42098 * 106.40161 * 203.53678 * 19 18 17 22 22 O 1.42102 * 106.40077 * 336.45933 * 19 18 17 23 23 C 1.38206 * 120.33600 * 359.72319 * 18 17 16 24 24 C 1.38320 * 120.11923 * 0.56111 * 23 18 17 25 25 F 1.35103 * 120.11286 * 179.72046 * 24 23 18 26 26 H 1.08997 * 109.47120 * 60.00107 * 1 2 3 27 27 H 1.09004 * 109.47390 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47172 * 300.00145 * 1 2 3 29 29 H 1.08998 * 109.47172 * 239.99855 * 2 1 3 30 30 H 1.08997 * 109.47120 * 119.99893 * 2 1 3 31 31 H 1.08994 * 109.47587 * 29.99881 * 4 3 2 32 32 H 1.09004 * 109.46743 * 150.00493 * 4 3 2 33 33 H 0.96998 * 120.00172 * 179.97438 * 8 7 5 34 34 H 1.07997 * 120.05984 * 359.97438 * 16 15 13 35 35 H 1.07992 * 119.88988 * 180.02562 * 17 16 15 36 36 H 0.97003 * 119.99933 * 149.99684 * 20 19 18 37 37 H 0.97000 * 120.00599 * 330.00144 * 20 19 18 38 38 H 1.08005 * 119.94353 * 180.28279 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9699 2.1752 -1.2303 5 6 3.2523 1.9882 -1.9994 6 1 4.0258 1.3422 -1.6110 7 6 3.4378 2.6410 -3.1997 8 7 2.4957 3.4272 -3.6730 9 14 5.0270 2.4087 -4.1534 10 1 4.8823 1.2610 -5.0845 11 1 5.3237 3.6404 -4.9283 12 1 6.1383 2.1404 -3.2058 13 6 2.5120 1.9215 1.1318 14 8 2.8045 3.1009 1.1650 15 6 2.6977 1.0804 2.3316 16 6 1.8138 0.0323 2.5976 17 6 1.9930 -0.7492 3.7190 18 6 3.0465 -0.4988 4.5819 19 16 3.2664 -1.5046 6.0118 20 7 4.2437 -2.7686 5.5764 21 8 4.0078 -0.7254 6.9403 22 8 1.9943 -2.0645 6.3079 23 6 3.9302 0.5321 4.3240 24 6 3.7601 1.3287 3.2061 25 9 4.6207 2.3400 2.9571 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.1288 1.8478 -1.8412 32 1 1.8478 3.2286 -0.9782 33 1 2.6262 3.8868 -4.5172 34 1 0.9915 -0.1655 1.9260 35 1 1.3099 -1.5600 3.9246 36 1 4.8303 -3.1764 6.2326 37 1 4.2297 -3.1012 4.6653 38 1 4.7524 0.7189 4.9989 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000538838382.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:16 Heat of formation + Delta-G solvation = -100.064373 kcal Electronic energy + Delta-G solvation = -26276.563274 eV Core-core repulsion = 22161.969843 eV Total energy + Delta-G solvation = -4114.593431 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.88822 -40.28843 -38.24123 -37.51310 -36.18598 -35.75039 -33.59819 -33.12969 -31.79959 -31.04200 -30.24128 -27.44914 -24.78145 -23.69240 -22.90330 -22.39368 -20.03521 -19.47487 -18.75640 -17.77427 -17.30284 -17.08564 -16.78773 -16.51606 -15.94550 -15.78974 -15.53603 -15.42549 -14.89230 -14.68574 -14.28853 -13.88695 -13.40497 -13.02696 -12.90838 -12.77643 -12.54545 -12.47483 -12.42940 -12.33412 -12.15296 -11.98332 -11.77854 -11.32565 -11.26721 -11.00240 -10.89136 -10.78737 -10.66686 -10.23571 -9.78956 -9.62274 -9.20711 -9.08590 -8.52230 -7.87343 -6.13652 -4.19261 -0.09832 0.17895 0.78322 2.53111 2.85148 3.24001 3.25967 3.31663 3.34507 3.42683 3.66036 3.86686 4.15710 4.35826 4.45120 4.57396 4.58917 4.86079 5.06702 5.15268 5.21019 5.38944 5.41907 5.50970 5.57417 5.58856 5.65135 5.74404 5.82879 6.09513 6.35061 6.39297 6.61811 6.88651 7.28636 7.35551 7.81498 8.10516 8.13939 8.67129 8.86814 9.46121 10.94510 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.019802 B = 0.003251 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.625988 B = 8611.728130 C = 9061.044082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.070 3.930 3 N -0.581 5.581 4 C 0.245 3.755 5 C -0.532 4.532 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.892 5.892 9 Si 0.899 3.101 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.539 3.461 14 O -0.517 6.517 15 C -0.093 4.093 16 C -0.107 4.107 17 C -0.044 4.044 18 C -0.644 4.644 19 S 2.708 3.292 20 N -1.247 6.247 21 O -0.959 6.959 22 O -0.956 6.956 23 C -0.061 4.061 24 C 0.132 3.868 25 F -0.111 7.111 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.038 0.962 32 H 0.048 0.952 33 H 0.265 0.735 34 H 0.173 0.827 35 H 0.154 0.846 36 H 0.422 0.578 37 H 0.419 0.581 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.556 -15.670 15.928 22.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.053 4.053 3 N -0.312 5.312 4 C 0.127 3.873 5 C -0.571 4.571 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.324 3.676 14 O -0.393 6.393 15 C -0.098 4.098 16 C -0.126 4.126 17 C -0.064 4.064 18 C -0.731 4.731 19 S 2.795 3.205 20 N -0.922 5.922 21 O -0.949 6.949 22 O -0.945 6.945 23 C -0.081 4.081 24 C 0.111 3.889 25 F -0.089 7.089 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.189 0.811 35 H 0.172 0.828 36 H 0.252 0.748 37 H 0.246 0.754 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.904 -14.532 16.607 22.086 hybrid contribution 1.385 0.029 -1.674 2.173 sum 0.482 -14.504 14.934 20.823 Atomic orbital electron populations 1.22252 0.96007 1.02049 1.03111 1.22290 0.94299 0.84613 1.04081 1.48175 1.58778 1.13324 1.10891 1.19381 0.97469 0.91920 0.78532 1.21398 1.02045 1.28618 1.05058 0.92424 1.24926 0.96947 0.94744 0.97319 1.69925 1.33231 1.29349 1.20567 0.86474 0.83421 0.77659 0.79758 1.20554 1.20962 1.19865 1.17884 0.79906 0.87218 0.82635 1.90829 1.50026 1.15269 1.83199 1.20903 0.95318 0.96999 0.96591 1.22224 1.00065 0.93071 0.97192 1.20985 0.94725 0.99007 0.91636 1.30695 1.05347 1.14390 1.22656 1.01480 0.73514 0.72904 0.72588 1.53099 1.62546 1.53664 1.22874 1.93614 1.72059 1.69706 1.59488 1.93628 1.41448 1.77588 1.81820 1.20819 0.98879 0.92875 0.95502 1.17671 0.89258 0.87463 0.94545 1.91634 1.67040 1.56485 1.93694 0.90993 0.91487 0.92544 0.89948 0.89118 0.94418 0.93434 0.92564 0.81059 0.82825 0.74794 0.75384 0.82356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 9.20 37.16 0.34 -1.77 16 2 C 0.07 1.03 5.62 -4.04 -0.02 1.01 16 3 N -0.58 -11.82 2.49 -176.23 -0.44 -12.26 16 4 C 0.25 6.20 5.17 -5.19 -0.03 6.17 16 5 C -0.53 -14.73 9.39 -34.44 -0.32 -15.06 16 6 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 9 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.54 11.34 7.32 -12.40 -0.09 11.25 16 14 O -0.52 -13.24 15.57 5.31 0.08 -13.15 16 15 C -0.09 -1.51 5.53 -104.91 -0.58 -2.09 16 16 C -0.11 -1.25 7.43 -39.19 -0.29 -1.54 16 17 C -0.04 -0.41 9.50 -39.64 -0.38 -0.79 16 18 C -0.64 -6.23 5.98 -39.51 -0.24 -6.47 16 19 S 2.71 21.98 6.28 -107.50 -0.67 21.31 16 20 N -1.25 -5.18 9.52 60.35 0.57 -4.61 16 21 O -0.96 -10.82 17.27 -57.17 -0.99 -11.81 16 22 O -0.96 -10.26 17.27 -57.17 -0.99 -11.25 16 23 C -0.06 -0.71 9.48 -39.56 -0.38 -1.09 16 24 C 0.13 2.06 7.24 -38.96 -0.28 1.78 16 25 F -0.11 -2.03 16.07 2.25 0.04 -1.99 16 26 H 0.07 1.00 7.48 -51.93 -0.39 0.61 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.64 7.21 -51.93 -0.37 0.26 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.09 1.07 3.76 -52.65 -0.20 0.87 16 31 H 0.04 0.95 7.38 -51.93 -0.38 0.56 16 32 H 0.05 1.37 7.34 -51.93 -0.38 0.99 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.17 1.73 3.33 -52.49 -0.17 1.56 16 35 H 0.15 0.97 7.60 -52.49 -0.40 0.58 16 36 H 0.42 1.08 8.96 -34.47 -0.31 0.78 16 37 H 0.42 0.90 8.96 -34.47 -0.31 0.59 16 38 H 0.16 1.55 7.61 -52.48 -0.40 1.15 16 LS Contribution 337.98 15.07 5.09 5.09 Total: -1.00 -38.20 337.98 -7.65 -45.85 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -3.71 Total: -1.47 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -2.36 Total: -6.92 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.87 Total: -42.10 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -1.89 Total: -36.21 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 21.98 SS G_CDS: -0.67 Total: 21.31 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -38.20 -7.65 -45.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000538838382.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.216 kcal (2) G-P(sol) polarization free energy of solvation -38.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds