Wall clock time and date at job start Tue Mar 31 2020 06:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47186 * 2 1 4 4 C 1.46503 * 119.99657 * 284.15567 * 3 2 1 5 5 C 1.50700 * 109.46687 * 269.99463 * 4 3 2 6 6 H 1.08005 * 120.00432 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00012 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99851 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00150 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47186 * 90.00468 * 9 7 5 11 11 H 1.48506 * 109.46952 * 210.00415 * 9 7 5 12 12 H 1.48498 * 109.47149 * 330.00113 * 9 7 5 13 13 C 1.34779 * 120.00193 * 104.15204 * 3 2 1 14 14 O 1.21564 * 119.99969 * 186.65452 * 13 3 2 15 15 C 1.47693 * 119.99642 * 6.65316 * 13 3 2 16 16 C 1.39660 * 120.16789 * 326.44017 * 15 13 3 17 17 C 1.37855 * 119.87696 * 179.97438 * 16 15 13 18 18 C 1.38463 * 120.21992 * 359.97438 * 17 16 15 19 19 S 1.76197 * 119.83188 * 180.02562 * 18 17 16 20 20 N 1.65598 * 107.21759 * 89.99683 * 19 18 17 21 21 O 1.42098 * 106.40161 * 203.53678 * 19 18 17 22 22 O 1.42102 * 106.40077 * 336.45933 * 19 18 17 23 23 C 1.38206 * 120.33600 * 359.72319 * 18 17 16 24 24 C 1.38320 * 120.11923 * 0.56111 * 23 18 17 25 25 F 1.35103 * 120.11286 * 179.72046 * 24 23 18 26 26 H 1.08997 * 109.47120 * 60.00107 * 1 2 3 27 27 H 1.09004 * 109.47390 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47172 * 300.00145 * 1 2 3 29 29 H 1.08998 * 109.47172 * 239.99855 * 2 1 3 30 30 H 1.08997 * 109.47120 * 119.99893 * 2 1 3 31 31 H 1.08994 * 109.47587 * 29.99881 * 4 3 2 32 32 H 1.09004 * 109.46743 * 150.00493 * 4 3 2 33 33 H 0.96998 * 120.00172 * 179.97438 * 8 7 5 34 34 H 1.07997 * 120.05984 * 359.97438 * 16 15 13 35 35 H 1.07992 * 119.88988 * 180.02562 * 17 16 15 36 36 H 0.97003 * 119.99933 * 149.99684 * 20 19 18 37 37 H 0.97000 * 120.00599 * 330.00144 * 20 19 18 38 38 H 1.08005 * 119.94353 * 180.28279 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9699 2.1752 -1.2303 5 6 3.2523 1.9882 -1.9994 6 1 4.0258 1.3422 -1.6110 7 6 3.4378 2.6410 -3.1997 8 7 2.4957 3.4272 -3.6730 9 14 5.0270 2.4087 -4.1534 10 1 4.8823 1.2610 -5.0845 11 1 5.3237 3.6404 -4.9283 12 1 6.1383 2.1404 -3.2058 13 6 2.5120 1.9215 1.1318 14 8 2.8045 3.1009 1.1650 15 6 2.6977 1.0804 2.3316 16 6 1.8138 0.0323 2.5976 17 6 1.9930 -0.7492 3.7190 18 6 3.0465 -0.4988 4.5819 19 16 3.2664 -1.5046 6.0118 20 7 4.2437 -2.7686 5.5764 21 8 4.0078 -0.7254 6.9403 22 8 1.9943 -2.0645 6.3079 23 6 3.9302 0.5321 4.3240 24 6 3.7601 1.3287 3.2061 25 9 4.6207 2.3400 2.9571 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.1288 1.8478 -1.8412 32 1 1.8478 3.2286 -0.9782 33 1 2.6262 3.8868 -4.5172 34 1 0.9915 -0.1655 1.9260 35 1 1.3099 -1.5600 3.9246 36 1 4.8303 -3.1764 6.2326 37 1 4.2297 -3.1012 4.6653 38 1 4.7524 0.7189 4.9989 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000538838382.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:15 Heat of formation + Delta-G solvation = -131.449241 kcal Electronic energy + Delta-G solvation = -26277.924224 eV Core-core repulsion = 22161.969843 eV Total energy + Delta-G solvation = -4115.954381 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -50.15220 -41.61479 -39.52947 -38.28674 -37.34044 -36.95853 -35.09679 -34.02292 -33.10516 -32.15117 -31.47296 -29.31990 -26.17754 -25.08219 -24.06816 -23.80421 -20.87514 -20.74637 -19.59067 -18.76507 -18.48309 -18.34870 -18.11905 -17.77865 -17.15898 -16.90509 -16.78350 -16.50469 -16.19150 -16.16596 -15.80322 -15.25076 -14.65363 -14.44786 -14.13266 -13.96632 -13.81273 -13.55877 -13.34662 -13.24789 -13.20529 -13.15082 -13.13594 -12.88556 -12.72333 -12.57736 -12.25340 -12.21100 -11.90319 -11.78250 -11.31614 -11.01817 -10.69182 -10.56950 -10.09745 -9.60886 -8.28567 -6.43789 -1.00992 -0.62549 -0.18796 1.32709 1.36426 1.40430 1.47321 1.92187 2.11693 2.28183 2.35179 2.68332 2.86144 3.01508 3.18736 3.30244 3.64749 3.74978 3.92165 4.00960 4.18528 4.27898 4.43358 4.53800 4.63716 4.69929 4.77331 4.86592 4.90399 5.00188 5.14185 5.32998 5.36258 5.41485 5.46681 5.72495 5.97657 6.40469 6.49643 6.64443 7.08270 7.28674 8.78990 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.019802 B = 0.003251 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.625988 B = 8611.728130 C = 9061.044082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.060 3.940 3 N -0.584 5.584 4 C 0.261 3.739 5 C -0.550 4.550 6 H 0.052 0.948 7 C 0.011 3.989 8 N -0.925 5.925 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.275 1.275 13 C 0.529 3.471 14 O -0.583 6.583 15 C -0.119 4.119 16 C -0.099 4.099 17 C -0.022 4.022 18 C -0.632 4.632 19 S 2.742 3.258 20 N -1.229 6.229 21 O -0.988 6.988 22 O -0.973 6.973 23 C -0.052 4.052 24 C 0.099 3.901 25 F -0.139 7.139 26 H 0.045 0.955 27 H 0.113 0.887 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.127 0.873 31 H 0.034 0.966 32 H -0.002 1.002 33 H 0.269 0.731 34 H 0.191 0.809 35 H 0.199 0.801 36 H 0.433 0.567 37 H 0.432 0.568 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.615 -19.735 17.346 26.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.060 4.060 3 N -0.314 5.314 4 C 0.140 3.860 5 C -0.588 4.588 6 H 0.070 0.930 7 C -0.189 4.189 8 N -0.564 5.564 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.206 1.206 12 H -0.200 1.200 13 C 0.317 3.683 14 O -0.464 6.464 15 C -0.123 4.123 16 C -0.117 4.117 17 C -0.041 4.041 18 C -0.717 4.717 19 S 2.826 3.174 20 N -0.910 5.910 21 O -0.978 6.978 22 O -0.962 6.962 23 C -0.071 4.071 24 C 0.078 3.922 25 F -0.118 7.118 26 H 0.064 0.936 27 H 0.131 0.869 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.145 0.855 31 H 0.052 0.948 32 H 0.016 0.984 33 H 0.078 0.922 34 H 0.208 0.792 35 H 0.216 0.784 36 H 0.266 0.734 37 H 0.263 0.737 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.984 -18.658 18.013 25.953 hybrid contribution 1.363 1.183 -1.995 2.691 sum 0.379 -17.475 16.018 23.708 Atomic orbital electron populations 1.22238 0.93602 1.04737 1.02270 1.22753 0.96259 0.81392 1.05628 1.48171 1.58753 1.15192 1.09258 1.18811 0.96617 0.90164 0.80366 1.21673 1.02727 1.28771 1.05654 0.92959 1.25844 1.00465 0.94224 0.98339 1.70042 1.35227 1.30069 1.21109 0.85409 0.78752 0.78277 0.78347 1.18357 1.20566 1.20020 1.18678 0.78455 0.87089 0.84062 1.90771 1.52684 1.18279 1.84661 1.20561 0.97846 0.98676 0.95225 1.22389 0.99246 0.91643 0.98423 1.21504 0.94328 0.98636 0.89624 1.31110 1.04401 1.13402 1.22769 1.00492 0.73060 0.72575 0.71255 1.52690 1.62104 1.52100 1.24079 1.93584 1.72640 1.71007 1.60570 1.93617 1.42986 1.77750 1.81841 1.20981 0.99716 0.92337 0.94091 1.18090 0.89640 0.88206 0.96297 1.91553 1.68034 1.58056 1.94119 0.93623 0.86887 0.91705 0.90502 0.85542 0.94767 0.98383 0.92237 0.79222 0.78372 0.73383 0.73745 0.80663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.75 9.20 71.98 0.66 -3.09 16 2 C 0.06 1.71 5.62 86.38 0.49 2.19 16 3 N -0.58 -24.83 2.49 -829.75 -2.07 -26.89 16 4 C 0.26 14.08 5.17 85.63 0.44 14.52 16 5 C -0.55 -31.75 9.39 25.60 0.24 -31.51 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 7 C 0.01 0.62 5.46 84.66 0.46 1.09 16 8 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 9 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 10 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 13 C 0.53 23.57 7.32 86.74 0.64 24.20 16 14 O -0.58 -32.50 15.57 -3.92 -0.06 -32.56 16 15 C -0.12 -3.85 5.53 -20.05 -0.11 -3.96 16 16 C -0.10 -2.03 7.43 22.52 0.17 -1.87 16 17 C -0.02 -0.31 9.50 22.23 0.21 -0.10 16 18 C -0.63 -9.97 5.98 22.32 0.13 -9.84 16 19 S 2.74 33.88 6.28 -56.49 -0.35 33.52 16 20 N -1.23 -4.85 9.52 37.02 0.35 -4.50 16 21 O -0.99 -19.45 17.27 -128.00 -2.21 -21.66 16 22 O -0.97 -16.58 17.27 -128.00 -2.21 -18.79 16 23 C -0.05 -1.12 9.48 22.28 0.21 -0.91 16 24 C 0.10 3.13 7.24 22.67 0.16 3.30 16 25 F -0.14 -5.48 16.07 44.97 0.72 -4.76 16 26 H 0.04 1.25 7.48 -2.39 -0.02 1.24 16 27 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.06 1.32 7.21 -2.39 -0.02 1.31 16 29 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.13 2.64 3.76 -3.06 -0.01 2.63 16 31 H 0.03 1.83 7.38 -2.39 -0.02 1.82 16 32 H 0.00 -0.12 7.34 -2.38 -0.02 -0.14 16 33 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.19 3.14 3.33 -2.91 -0.01 3.13 16 35 H 0.20 1.15 7.60 -2.91 -0.02 1.12 16 36 H 0.43 0.44 8.96 -96.74 -0.87 -0.43 16 37 H 0.43 -0.25 8.96 -96.74 -0.87 -1.12 16 38 H 0.18 3.15 7.61 -2.91 -0.02 3.13 16 Total: -1.00 -90.53 337.98 -0.39 -90.92 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: -0.58 Total: -0.63 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 3.70 Total: -5.98 kcal Atomic # 7 Polarization: -85.40 SS G_CDS: -1.43 Total: -86.83 kcal Atomic # 8 Polarization: -68.53 SS G_CDS: -4.48 Total: -73.02 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.72 Total: -4.76 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 33.88 SS G_CDS: -0.35 Total: 33.52 kcal Total: -90.53 -0.39 -90.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000538838382.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.524 kcal (2) G-P(sol) polarization free energy of solvation -90.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds