Wall clock time and date at job start Tue Mar 31 2020 06:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47351 * 2 1 4 4 C 1.50698 * 109.47072 * 239.99332 * 2 1 3 5 5 H 1.07998 * 120.00312 * 240.00339 * 4 2 1 6 6 C 1.37879 * 119.99592 * 60.00263 * 4 2 1 7 7 N 1.31513 * 120.00331 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47271 * 90.00166 * 8 6 4 10 10 H 1.48501 * 109.47421 * 209.99902 * 8 6 4 11 11 H 1.48499 * 109.47159 * 330.00162 * 8 6 4 12 12 N 1.46507 * 109.46833 * 119.99948 * 2 1 3 13 13 C 1.46497 * 120.00215 * 59.99844 * 12 2 1 14 14 C 1.34779 * 119.99526 * 239.99423 * 12 2 1 15 15 O 1.21574 * 120.00188 * 5.00886 * 14 12 2 16 16 C 1.47692 * 119.99637 * 185.00298 * 14 12 2 17 17 C 1.39656 * 120.16883 * 315.10132 * 16 14 12 18 18 C 1.37851 * 119.88017 * 179.69955 * 17 16 14 19 19 C 1.38463 * 120.21771 * 0.57715 * 18 17 16 20 20 S 1.76201 * 119.83454 * 179.69438 * 19 18 17 21 21 N 1.65594 * 107.22185 * 270.02586 * 20 19 18 22 22 O 1.42102 * 106.39770 * 23.56559 * 20 19 18 23 23 O 1.42095 * 106.39982 * 156.47982 * 20 19 18 24 24 C 1.38208 * 120.33535 * 359.72504 * 19 18 17 25 25 C 1.38314 * 120.11926 * 359.97014 * 24 19 18 26 26 F 1.35095 * 120.11254 * 180.02562 * 25 24 19 27 27 H 1.08998 * 109.47032 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46948 * 299.99791 * 1 2 3 29 29 H 1.09001 * 109.46950 * 60.00206 * 1 2 3 30 30 H 0.96997 * 120.00075 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.47008 * 275.29852 * 13 12 2 32 32 H 1.09006 * 109.46884 * 155.29971 * 13 12 2 33 33 H 1.09005 * 109.46892 * 35.30423 * 13 12 2 34 34 H 1.08000 * 120.06014 * 359.97438 * 17 16 14 35 35 H 1.08002 * 119.89829 * 180.27381 * 18 17 16 36 36 H 0.97007 * 119.99858 * 359.97438 * 21 20 19 37 37 H 0.96991 * 120.00174 * 180.02562 * 21 20 19 38 38 H 1.08004 * 119.93781 * 179.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3225 -1.1198 -4.0079 9 1 1.3447 -2.1618 -4.4123 10 1 2.4872 -0.1406 -5.1120 11 1 3.6308 -1.7569 -3.7118 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 6 2.7933 -0.0356 2.0833 15 8 3.0122 1.1515 1.9391 16 6 3.3763 -0.7600 3.2308 17 6 2.5913 -1.6425 3.9759 18 6 3.1432 -2.3202 5.0419 19 6 4.4700 -2.1198 5.3835 20 16 5.1630 -2.9853 6.7529 21 7 4.9292 -2.0454 8.0961 22 8 4.3692 -4.1498 6.9348 23 8 6.5661 -3.0280 6.5322 24 6 5.2535 -1.2439 4.6561 25 6 4.7156 -0.5613 3.5800 26 9 5.4817 0.2945 2.8688 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.7088 1.1610 -3.4844 31 1 0.6914 -2.1464 1.9164 32 1 2.4168 -2.5571 2.0659 33 1 1.6218 -2.6196 0.4746 34 1 1.5548 -1.7971 3.7148 35 1 2.5376 -3.0061 5.6157 36 1 4.4784 -1.1902 8.0171 37 1 5.2437 -2.3497 8.9617 38 1 6.2875 -1.0921 4.9284 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000538838428.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:06 Heat of formation + Delta-G solvation = -114.563082 kcal Electronic energy + Delta-G solvation = -26192.985397 eV Core-core repulsion = 22077.763255 eV Total energy + Delta-G solvation = -4115.222142 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.95516 -40.12031 -38.34271 -37.48635 -36.17163 -35.56368 -33.59454 -33.24001 -31.84174 -30.97989 -29.29855 -26.51986 -25.33793 -24.70371 -23.23537 -21.44907 -20.01444 -19.23262 -18.80727 -17.77010 -17.25786 -16.98093 -16.78083 -16.41609 -16.00734 -15.71771 -15.61560 -15.47064 -14.71342 -14.53894 -14.31444 -13.79732 -13.29902 -13.02574 -12.80021 -12.66745 -12.61543 -12.49891 -12.42821 -12.32000 -11.97693 -11.77229 -11.61079 -11.23087 -11.13898 -10.89951 -10.89888 -10.82896 -10.37330 -10.25476 -9.73609 -9.35790 -9.24572 -9.13660 -8.52096 -7.81250 -6.16127 -4.24989 -0.10852 0.16978 0.77122 2.53832 2.81372 3.19553 3.21979 3.29507 3.31102 3.35824 3.64126 3.83939 4.15493 4.31930 4.49784 4.56552 4.62498 4.86730 5.09042 5.15655 5.37853 5.52706 5.55172 5.57839 5.64019 5.73360 5.82425 6.22254 6.34932 6.59746 6.63595 6.69887 6.92359 7.20780 7.36575 7.60214 7.88661 8.05380 8.28973 8.61074 8.81714 9.41759 10.89306 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.023042 B = 0.002990 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.885165 B = 9362.505631 C = 9411.001703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.065 0.935 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.577 5.577 13 C 0.070 3.930 14 C 0.537 3.463 15 O -0.529 6.529 16 C -0.088 4.088 17 C -0.086 4.086 18 C -0.038 4.038 19 C -0.644 4.644 20 S 2.708 3.292 21 N -1.250 6.250 22 O -0.958 6.958 23 O -0.959 6.959 24 C -0.060 4.060 25 C 0.128 3.872 26 F -0.113 7.113 27 H 0.031 0.969 28 H 0.012 0.988 29 H 0.096 0.904 30 H 0.265 0.735 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.418 0.582 37 H 0.421 0.579 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.620 -7.049 20.501 21.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.083 0.917 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.307 5.307 13 C -0.074 4.074 14 C 0.322 3.678 15 O -0.407 6.407 16 C -0.093 4.093 17 C -0.105 4.105 18 C -0.057 4.057 19 C -0.731 4.731 20 S 2.796 3.204 21 N -0.925 5.925 22 O -0.947 6.947 23 O -0.948 6.948 24 C -0.080 4.080 25 C 0.107 3.893 26 F -0.091 7.091 27 H 0.050 0.950 28 H 0.031 0.969 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.172 0.828 35 H 0.172 0.828 36 H 0.246 0.754 37 H 0.251 0.749 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.098 -7.206 19.986 21.637 hybrid contribution -0.021 0.451 -1.128 1.215 sum 4.076 -6.754 18.858 20.442 Atomic orbital electron populations 1.22086 0.97737 0.99588 1.01049 1.19062 0.91188 0.94530 0.79349 0.91681 1.21279 1.32260 1.13250 0.90157 0.92117 1.24885 0.94808 0.94923 0.99022 1.69869 1.36089 1.22443 1.23974 0.86458 0.79246 0.79299 0.82202 1.20511 1.21002 1.19862 1.48243 1.47544 1.11782 1.23104 1.21985 0.99010 0.83247 1.03143 1.17976 0.80474 0.87064 0.82291 1.90813 1.60672 1.14461 1.74712 1.20853 0.93360 0.97307 0.97778 1.21599 1.01076 0.93818 0.94021 1.20947 0.92558 0.96466 0.95777 1.30557 1.04953 1.15717 1.21897 1.01463 0.73727 0.72689 0.72534 1.53026 1.77801 1.36428 1.25253 1.93620 1.70789 1.45238 1.85073 1.93621 1.30670 1.85577 1.84972 1.20837 1.00703 0.93375 0.93120 1.17639 0.88350 0.91340 0.92017 1.91620 1.74043 1.66963 1.76520 0.94974 0.96867 0.88584 0.92525 0.92984 0.92053 0.89720 0.82806 0.82764 0.75442 0.74865 0.82276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.97 37.16 0.33 -3.03 16 2 C 0.26 6.42 2.63 -69.08 -0.18 6.24 16 3 H 0.07 1.89 6.91 -51.93 -0.36 1.53 16 4 C -0.53 -14.04 8.03 -34.44 -0.28 -14.32 16 5 H 0.06 1.58 7.25 -52.49 -0.38 1.20 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -24.58 11.32 55.43 0.63 -23.96 16 8 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.58 -11.92 2.75 -176.43 -0.49 -12.40 16 13 C 0.07 1.10 8.04 59.85 0.48 1.58 16 14 C 0.54 11.08 7.10 -12.40 -0.09 11.00 16 15 O -0.53 -13.06 15.80 5.30 0.08 -12.97 16 16 C -0.09 -1.39 5.08 -104.91 -0.53 -1.92 16 17 C -0.09 -0.99 7.45 -39.19 -0.29 -1.28 16 18 C -0.04 -0.35 9.50 -39.64 -0.38 -0.73 16 19 C -0.64 -6.10 5.95 -39.51 -0.23 -6.33 16 20 S 2.71 21.94 6.28 -107.50 -0.67 21.27 16 21 N -1.25 -5.18 9.55 60.35 0.58 -4.61 16 22 O -0.96 -10.31 17.27 -57.17 -0.99 -11.30 16 23 O -0.96 -10.92 17.26 -57.17 -0.99 -11.91 16 24 C -0.06 -0.68 9.48 -39.56 -0.38 -1.06 16 25 C 0.13 1.93 7.25 -38.96 -0.28 1.64 16 26 F -0.11 -2.00 16.38 2.25 0.04 -1.97 16 27 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 28 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.10 2.44 6.07 -51.93 -0.32 2.13 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.05 0.68 7.58 -51.93 -0.39 0.29 16 32 H 0.06 0.81 5.29 -51.93 -0.27 0.54 16 33 H 0.08 1.43 6.96 -51.93 -0.36 1.07 16 34 H 0.15 1.50 6.18 -52.49 -0.32 1.18 16 35 H 0.15 1.01 7.60 -52.49 -0.40 0.61 16 36 H 0.42 0.94 8.92 -34.47 -0.31 0.63 16 37 H 0.42 1.04 8.96 -34.46 -0.31 0.73 16 38 H 0.16 1.49 7.60 -52.48 -0.40 1.10 16 LS Contribution 335.70 15.07 5.06 5.06 Total: -1.00 -36.30 335.70 -7.47 -43.77 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -3.78 Total: -0.19 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -1.92 Total: -6.53 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.72 Total: -40.97 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -1.89 Total: -36.18 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 21.94 SS G_CDS: -0.67 Total: 21.27 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.30 -7.47 -43.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000538838428.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.789 kcal (2) G-P(sol) polarization free energy of solvation -36.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds