Wall clock time and date at job start Tue Mar 31 2020 06:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47071 * 2 1 4 4 H 1.09000 * 109.47173 * 305.00158 * 3 2 1 5 5 C 1.50698 * 109.47110 * 185.00076 * 3 2 1 6 6 H 1.07996 * 120.00121 * 239.99953 * 5 3 2 7 7 C 1.37881 * 119.99691 * 59.99959 * 5 3 2 8 8 N 1.31512 * 120.00105 * 0.02562 * 7 5 3 9 9 Si 1.86809 * 119.99670 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46703 * 90.00047 * 9 7 5 11 11 H 1.48500 * 109.46654 * 209.99969 * 9 7 5 12 12 H 1.48498 * 109.46876 * 330.00230 * 9 7 5 13 13 N 1.46499 * 109.47187 * 65.00366 * 3 2 1 14 14 C 1.34781 * 119.99877 * 274.99930 * 13 3 2 15 15 O 1.21572 * 119.99775 * 359.97438 * 14 13 3 16 16 C 1.47694 * 120.00242 * 180.02562 * 14 13 3 17 17 C 1.39664 * 120.16279 * 359.97244 * 16 14 13 18 18 C 1.37851 * 119.87503 * 180.02562 * 17 16 14 19 19 C 1.38464 * 120.22239 * 0.02562 * 18 17 16 20 20 S 1.76199 * 119.83188 * 179.97438 * 19 18 17 21 21 N 1.65607 * 107.21396 * 89.99930 * 20 19 18 22 22 O 1.42099 * 106.40230 * 203.53871 * 20 19 18 23 23 O 1.42099 * 106.40196 * 336.46012 * 20 19 18 24 24 C 1.38200 * 120.33490 * 359.71544 * 19 18 17 25 25 C 1.38327 * 120.11748 * 0.56169 * 24 19 18 26 26 F 1.35104 * 120.10912 * 179.71579 * 25 24 19 27 27 H 1.08995 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46948 * 299.99764 * 1 2 3 29 29 H 1.09004 * 109.47470 * 59.99576 * 1 2 3 30 30 H 1.09003 * 109.46948 * 240.00236 * 2 1 3 31 31 H 1.09003 * 109.47104 * 120.00024 * 2 1 3 32 32 H 0.97004 * 119.99435 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00512 * 94.99765 * 13 3 2 34 34 H 1.08003 * 120.06044 * 0.05150 * 17 16 14 35 35 H 1.08007 * 119.89244 * 180.02562 * 18 17 16 36 36 H 0.97003 * 119.99567 * 150.00150 * 21 20 19 37 37 H 0.96993 * 119.99837 * 329.99882 * 21 20 19 38 38 H 1.08006 * 119.94412 * 180.30349 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0049 0.8813 -1.3819 10 1 6.5548 -0.3502 -0.7603 11 1 6.3828 0.9224 -2.8174 12 1 6.5569 2.0738 -0.6903 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3411 2.6326 0.4319 16 6 0.0447 3.3252 2.6288 17 6 0.9339 3.3641 3.7051 18 6 0.5631 3.9820 4.8802 19 6 -0.6881 4.5636 4.9972 20 16 -1.1516 5.3500 6.5042 21 7 -0.6943 6.9375 6.3895 22 8 -2.5722 5.3432 6.5400 23 8 -0.3458 4.7729 7.5224 24 6 -1.5730 4.5349 3.9361 25 6 -1.2176 3.9136 2.7524 26 9 -2.0851 3.8808 1.7172 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8292 -0.0610 -2.9500 33 1 2.2720 2.1231 1.9978 34 1 1.9105 2.9113 3.6166 35 1 1.2507 4.0126 5.7125 36 1 -1.1971 7.6222 6.8579 37 1 0.0764 7.1827 5.8540 38 1 -2.5455 4.9948 4.0326 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546585834.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:54 Heat of formation + Delta-G solvation = -130.936958 kcal Electronic energy + Delta-G solvation = -25961.929186 eV Core-core repulsion = 21845.997019 eV Total energy + Delta-G solvation = -4115.932167 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.89535 -39.96122 -38.38297 -37.53286 -36.20548 -35.22503 -33.61642 -32.87846 -31.92171 -30.94045 -30.63769 -27.16526 -24.82330 -23.37226 -22.80071 -20.85975 -20.03372 -19.55377 -18.94690 -18.03625 -17.78658 -17.13523 -16.71459 -16.18862 -15.87542 -15.79227 -15.44434 -15.30055 -14.84321 -14.54986 -14.35403 -13.79404 -13.33730 -12.93507 -12.91837 -12.77455 -12.55234 -12.46688 -12.38208 -12.13909 -12.05584 -11.62174 -11.36519 -11.31410 -11.08209 -10.91708 -10.88393 -10.41066 -10.29585 -9.80564 -9.68530 -9.34022 -9.15933 -9.14091 -8.60547 -8.01690 -6.21430 -4.31953 -0.14064 0.13227 0.77388 2.48722 2.82194 3.18369 3.25466 3.26985 3.28281 3.63504 3.70231 3.85308 4.11403 4.26687 4.43280 4.54884 4.83083 4.90936 5.09898 5.12644 5.40946 5.54928 5.55951 5.67598 5.75720 6.31468 6.35906 6.37174 6.56615 6.59964 6.94249 7.08886 7.19645 7.28232 7.49759 7.59360 7.77472 8.06525 8.42441 8.62432 8.87153 9.35258 10.83853 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.020206 B = 0.002977 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.374432 B = 9402.251278 C =10274.814735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.053 0.947 5 C -0.538 4.538 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.903 3.097 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.693 5.693 14 C 0.532 3.468 15 O -0.521 6.521 16 C -0.098 4.098 17 C -0.083 4.083 18 C -0.042 4.042 19 C -0.643 4.643 20 S 2.708 3.292 21 N -1.247 6.247 22 O -0.959 6.959 23 O -0.955 6.955 24 C -0.063 4.063 25 C 0.134 3.866 26 F -0.107 7.107 27 H 0.025 0.975 28 H 0.036 0.964 29 H 0.051 0.949 30 H 0.102 0.898 31 H 0.032 0.968 32 H 0.266 0.734 33 H 0.389 0.611 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.422 0.578 37 H 0.419 0.581 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.567 11.453 16.308 20.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.070 0.930 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.342 5.342 14 C 0.315 3.685 15 O -0.399 6.399 16 C -0.103 4.103 17 C -0.102 4.102 18 C -0.061 4.061 19 C -0.730 4.730 20 S 2.795 3.205 21 N -0.922 5.922 22 O -0.949 6.949 23 O -0.944 6.944 24 C -0.083 4.083 25 C 0.113 3.887 26 F -0.085 7.085 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.120 0.880 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.222 0.778 34 H 0.168 0.832 35 H 0.172 0.828 36 H 0.252 0.748 37 H 0.246 0.754 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.594 10.699 16.075 20.405 hybrid contribution 1.568 0.236 -0.755 1.756 sum -5.027 10.935 15.320 19.482 Atomic orbital electron populations 1.21852 0.98280 0.98296 1.01182 1.21954 0.92637 0.99543 1.02530 1.18904 0.94498 0.89294 0.80419 0.92951 1.21180 0.90397 1.39547 1.06526 0.91997 1.24887 0.98755 0.94664 0.95282 1.69889 1.35257 1.37240 1.09315 0.86429 0.84610 0.78481 0.77473 1.20474 1.21019 1.19834 1.46503 1.13807 1.54949 1.18916 1.17905 0.83806 0.80431 0.86333 1.90846 1.51014 1.58964 1.39077 1.20999 0.93752 0.98584 0.96960 1.21489 0.99709 0.97520 0.91510 1.20958 0.93790 0.93309 0.98035 1.30710 1.03546 1.17938 1.20764 1.01493 0.73464 0.72478 0.73077 1.53098 1.44681 1.27535 1.66868 1.93614 1.29001 1.86029 1.86219 1.93633 1.70551 1.76697 1.53530 1.20844 0.99975 0.97174 0.90302 1.17701 0.87528 0.98232 0.85283 1.91641 1.67200 1.93832 1.55816 0.95602 0.94528 0.93004 0.88029 0.94868 0.92415 0.77774 0.83188 0.82825 0.74783 0.75387 0.82383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.15 16 3 C 0.27 6.49 2.24 -69.08 -0.15 6.33 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 5 C -0.54 -13.53 8.73 -34.44 -0.30 -13.83 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.89 11.29 55.43 0.63 -23.26 16 9 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 N -0.69 -13.51 4.97 -55.93 -0.28 -13.79 16 14 C 0.53 10.27 6.34 -12.40 -0.08 10.19 16 15 O -0.52 -11.98 12.48 5.30 0.07 -11.91 16 16 C -0.10 -1.47 5.88 -104.91 -0.62 -2.09 16 17 C -0.08 -0.92 9.54 -39.19 -0.37 -1.30 16 18 C -0.04 -0.38 9.50 -39.64 -0.38 -0.76 16 19 C -0.64 -5.99 5.98 -39.51 -0.24 -6.23 16 20 S 2.71 21.50 6.28 -107.50 -0.67 20.82 16 21 N -1.25 -4.99 9.52 60.35 0.57 -4.42 16 22 O -0.96 -10.57 17.27 -57.17 -0.99 -11.55 16 23 O -0.95 -10.27 17.27 -57.17 -0.99 -11.26 16 24 C -0.06 -0.69 9.48 -39.56 -0.38 -1.07 16 25 C 0.13 1.94 7.29 -38.96 -0.28 1.66 16 26 F -0.11 -1.81 15.55 2.25 0.04 -1.78 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.04 0.79 5.65 -51.93 -0.29 0.49 16 29 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 30 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.39 6.29 6.57 -40.82 -0.27 6.03 16 34 H 0.15 1.37 6.41 -52.48 -0.34 1.04 16 35 H 0.15 1.00 7.60 -52.48 -0.40 0.60 16 36 H 0.42 1.01 8.96 -34.47 -0.31 0.70 16 37 H 0.42 0.86 8.96 -34.47 -0.31 0.55 16 38 H 0.16 1.44 7.61 -52.48 -0.40 1.04 16 LS Contribution 335.17 15.07 5.05 5.05 Total: -1.00 -34.87 335.17 -8.12 -43.00 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -3.81 Total: 5.59 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -2.72 Total: -11.33 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.92 Total: -41.47 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -1.91 Total: -34.72 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 21.50 SS G_CDS: -0.67 Total: 20.82 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.87 -8.12 -43.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546585834.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.939 kcal (2) G-P(sol) polarization free energy of solvation -34.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds