Wall clock time and date at job start Tue Mar 31 2020 06:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21568 * 120.00022 * 0.02562 * 14 13 3 16 16 C 1.47700 * 119.99824 * 180.02562 * 14 13 3 17 17 C 1.39658 * 120.16743 * 359.72494 * 16 14 13 18 18 C 1.37857 * 119.87639 * 179.69927 * 17 16 14 19 19 C 1.38459 * 120.21593 * 0.57983 * 18 17 16 20 20 S 1.76207 * 119.82659 * 179.69637 * 19 18 17 21 21 N 1.65598 * 107.21591 * 270.01839 * 20 19 18 22 22 O 1.42098 * 106.40058 * 23.56281 * 20 19 18 23 23 O 1.42102 * 106.39733 * 156.48135 * 20 19 18 24 24 C 1.38197 * 120.33943 * 359.71869 * 19 18 17 25 25 C 1.38315 * 120.11976 * 359.97438 * 24 19 18 26 26 F 1.35106 * 120.10914 * 179.97438 * 25 24 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 33 33 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 34 34 H 1.08002 * 120.05979 * 359.97438 * 17 16 14 35 35 H 1.07996 * 119.89213 * 180.27371 * 18 17 16 36 36 H 0.97011 * 119.99399 * 150.00251 * 21 20 19 37 37 H 0.96995 * 120.00672 * 330.00256 * 21 20 19 38 38 H 1.08004 * 119.93924 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3410 2.6325 -0.4318 16 6 0.0443 3.3243 -2.6291 17 6 0.9355 3.3679 -3.7035 18 6 0.5621 3.9800 -4.8810 19 6 -0.6888 4.5620 -4.9976 20 16 -1.1524 5.3486 -6.5047 21 7 -0.6940 6.9358 -6.3903 22 8 -0.3473 4.7707 -7.5230 23 8 -2.5729 5.3428 -6.5398 24 6 -1.5754 4.5295 -3.9380 25 6 -1.2177 3.9135 -2.7524 26 9 -2.0844 3.8823 -1.7164 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 5.8770 0.4816 2.1128 33 1 2.2720 2.1232 -1.9977 34 1 1.9137 2.9191 -3.6136 35 1 1.2494 4.0100 -5.7134 36 1 -0.4485 7.4284 -7.1891 37 1 -0.6709 7.3728 -5.5247 38 1 -2.5497 4.9851 -4.0362 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546585835.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:58 Heat of formation + Delta-G solvation = -122.585011 kcal Electronic energy + Delta-G solvation = -26046.988248 eV Core-core repulsion = 21931.418249 eV Total energy + Delta-G solvation = -4115.569999 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.97811 -40.09824 -38.54346 -37.56081 -36.23272 -35.50566 -33.63860 -32.93976 -32.15694 -31.04585 -30.99144 -27.66932 -24.93363 -23.31358 -22.66518 -21.23841 -20.13781 -19.79822 -19.01131 -18.14372 -17.81115 -17.09494 -16.89796 -16.41384 -16.11277 -15.90598 -15.50551 -15.43279 -15.03594 -14.68734 -14.37475 -13.85170 -13.48376 -13.24290 -13.02733 -12.86678 -12.58145 -12.50037 -12.44417 -12.41762 -12.10793 -12.02337 -11.88180 -11.40778 -11.18355 -11.01691 -10.91287 -10.72152 -10.03067 -9.84567 -9.71083 -9.41382 -9.34037 -9.20552 -8.85849 -8.26709 -6.30224 -4.33992 -0.19495 0.08396 0.71689 2.41572 2.77865 3.17207 3.24500 3.29793 3.33804 3.47468 3.56216 3.77692 4.05798 4.23461 4.39175 4.50866 4.73432 4.80546 5.03169 5.05633 5.34601 5.49121 5.53631 5.61565 5.67824 5.86993 5.93874 6.07815 6.29466 6.54942 6.57892 6.60464 6.71345 6.84601 7.06774 7.15999 7.36580 7.95042 8.33024 8.57305 8.70066 9.29470 10.81517 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.024288 B = 0.002999 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.571337 B = 9335.632735 C = 9988.793219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.242 3.758 4 H 0.053 0.947 5 C -0.539 4.539 6 H 0.081 0.919 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.882 3.118 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.260 1.260 13 N -0.686 5.686 14 C 0.535 3.465 15 O -0.523 6.523 16 C -0.101 4.101 17 C -0.081 4.081 18 C -0.035 4.035 19 C -0.641 4.641 20 S 2.708 3.292 21 N -1.247 6.247 22 O -0.957 6.957 23 O -0.956 6.956 24 C -0.068 4.068 25 C 0.135 3.865 26 F -0.107 7.107 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.034 0.966 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.269 0.731 33 H 0.395 0.605 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.422 0.578 37 H 0.419 0.581 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.577 10.544 -15.251 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.140 3.860 4 H 0.070 0.930 5 C -0.577 4.577 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.184 1.184 13 N -0.335 5.335 14 C 0.319 3.681 15 O -0.401 6.401 16 C -0.105 4.105 17 C -0.100 4.100 18 C -0.055 4.055 19 C -0.728 4.728 20 S 2.795 3.205 21 N -0.922 5.922 22 O -0.946 6.946 23 O -0.945 6.945 24 C -0.088 4.088 25 C 0.114 3.886 26 F -0.085 7.085 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.230 0.770 34 H 0.170 0.830 35 H 0.173 0.827 36 H 0.253 0.747 37 H 0.246 0.754 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.442 9.839 -15.109 21.354 hybrid contribution 0.264 -0.219 1.382 1.424 sum -11.177 9.621 -13.727 20.148 Atomic orbital electron populations 1.21887 0.96868 0.99289 1.02210 1.22299 0.94390 0.99708 1.01388 1.19253 0.95923 0.88620 0.82253 0.92962 1.20989 0.88306 1.40316 1.08091 0.90100 1.24814 0.94886 0.95011 0.97639 1.69852 1.08682 1.44162 1.29836 0.86914 0.80964 0.80022 0.80938 1.20124 1.22033 1.18426 1.46147 1.14066 1.54925 1.18363 1.17921 0.83530 0.80175 0.86470 1.90841 1.51103 1.58989 1.39147 1.20876 0.93887 0.98993 0.96750 1.21519 0.99667 0.97390 0.91469 1.20941 0.93695 0.92837 0.98002 1.30750 1.03522 1.17735 1.20751 1.01508 0.73900 0.72472 0.72659 1.53093 1.89069 1.31708 1.18284 1.93619 1.70019 1.76429 1.54546 1.93634 1.29371 1.86014 1.85530 1.20879 0.99986 0.97581 0.90380 1.17678 0.87471 0.98221 0.85254 1.91640 1.67282 1.93839 1.55770 0.93169 0.92727 0.94718 0.92493 0.92120 0.92142 0.76997 0.83041 0.82719 0.74731 0.75385 0.82304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.51 37.16 0.32 -2.55 16 2 C -0.14 -2.98 5.11 -26.74 -0.14 -3.12 16 3 C 0.24 5.48 1.83 -69.09 -0.13 5.35 16 4 H 0.05 1.31 6.63 -51.93 -0.34 0.97 16 5 C -0.54 -13.90 9.31 -34.44 -0.32 -14.22 16 6 H 0.08 2.17 7.98 -52.49 -0.42 1.75 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -25.52 13.96 55.43 0.77 -24.74 16 9 Si 0.88 21.12 24.41 -169.99 -4.15 16.97 16 10 H -0.27 -6.38 6.83 56.52 0.39 -5.99 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.26 -6.17 6.53 56.52 0.37 -5.80 16 13 N -0.69 -12.72 4.97 -55.93 -0.28 -13.00 16 14 C 0.53 9.71 6.34 -12.40 -0.08 9.63 16 15 O -0.52 -11.22 12.48 5.31 0.07 -11.15 16 16 C -0.10 -1.42 5.88 -104.91 -0.62 -2.04 16 17 C -0.08 -0.87 9.54 -39.19 -0.37 -1.24 16 18 C -0.04 -0.32 9.50 -39.64 -0.38 -0.69 16 19 C -0.64 -5.68 5.98 -39.52 -0.24 -5.91 16 20 S 2.71 20.58 6.28 -107.50 -0.67 19.91 16 21 N -1.25 -4.68 9.52 60.35 0.57 -4.11 16 22 O -0.96 -9.87 17.27 -57.17 -0.99 -10.86 16 23 O -0.96 -10.34 17.26 -57.17 -0.99 -11.32 16 24 C -0.07 -0.70 9.48 -39.57 -0.38 -1.08 16 25 C 0.14 1.84 7.29 -38.96 -0.28 1.55 16 26 F -0.11 -1.71 15.55 2.25 0.04 -1.67 16 27 H 0.05 0.98 5.65 -51.93 -0.29 0.68 16 28 H 0.05 1.14 7.84 -51.93 -0.41 0.73 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.29 3.22 -51.93 -0.17 1.12 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.40 6.19 6.57 -40.82 -0.27 5.93 16 34 H 0.15 1.34 6.41 -52.49 -0.34 1.01 16 35 H 0.16 1.01 7.60 -52.49 -0.40 0.61 16 36 H 0.42 0.90 8.96 -34.47 -0.31 0.59 16 37 H 0.42 0.81 8.96 -34.47 -0.31 0.50 16 38 H 0.16 1.31 7.60 -52.48 -0.40 0.91 16 LS Contribution 328.40 15.07 4.95 4.95 Total: -1.00 -35.89 328.40 -7.06 -42.95 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -3.68 Total: 4.30 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -2.71 Total: -12.22 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 1.07 Total: -41.85 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -1.91 Total: -33.34 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.15 Total: 16.97 kcal Atomic # 16 Polarization: 20.58 SS G_CDS: -0.67 Total: 19.91 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.89 -7.06 -42.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546585835.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.632 kcal (2) G-P(sol) polarization free energy of solvation -35.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds