Wall clock time and date at job start Tue Mar 31 2020 05:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48508 * 109.46685 * 269.99582 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99661 * 3 2 1 6 6 H 1.48494 * 109.47227 * 150.00179 * 3 2 1 7 7 C 1.38956 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99770 * 359.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 180.27617 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.48513 * 110.99684 * 169.99840 * 13 12 10 15 15 C 1.54292 * 104.71023 * 159.27506 * 14 13 12 16 16 H 1.09001 * 112.37929 * 98.55779 * 15 14 13 17 17 C 1.54292 * 108.81501 * 224.27046 * 15 14 13 18 18 N 1.49097 * 104.42820 * 136.53611 * 17 15 14 19 19 C 1.46899 * 110.76641 * 200.25246 * 18 17 15 20 20 C 1.50702 * 109.46841 * 304.90399 * 19 18 17 21 21 C 1.38228 * 120.00200 * 269.72133 * 20 19 18 22 22 C 1.38234 * 120.00320 * 179.74477 * 21 20 19 23 23 C 1.38242 * 119.99401 * 0.55560 * 22 21 20 24 24 C 1.38224 * 120.00103 * 359.70136 * 23 22 21 25 25 C 1.38231 * 120.00439 * 0.02562 * 24 23 22 26 26 C 1.48522 * 103.92023 * 319.51598 * 18 17 15 27 27 C 1.54284 * 104.71357 * 40.17239 * 26 18 17 28 28 H 1.09005 * 112.37907 * 98.55659 * 27 26 18 29 29 C 1.48517 * 110.99735 * 285.39650 * 13 12 10 30 30 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 32 32 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 33 33 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 34 34 H 1.09002 * 110.38942 * 278.08029 * 14 13 12 35 35 H 1.08999 * 110.39510 * 40.35251 * 14 13 12 36 36 H 1.09000 * 110.38518 * 254.54004 * 17 15 14 37 37 H 1.08995 * 110.38982 * 16.92139 * 17 15 14 38 38 H 1.08999 * 109.46945 * 64.90305 * 19 18 17 39 39 H 1.08992 * 109.47409 * 184.90230 * 19 18 17 40 40 H 1.08001 * 119.99678 * 0.02562 * 21 20 19 41 41 H 1.07997 * 120.00339 * 180.27639 * 22 21 20 42 42 H 1.08000 * 119.99494 * 179.72310 * 23 22 21 43 43 H 1.08003 * 120.00145 * 180.02562 * 24 23 22 44 44 H 1.07997 * 120.00341 * 179.97438 * 25 24 23 45 45 H 1.08996 * 110.38617 * 281.36270 * 26 18 17 46 46 H 1.08995 * 110.48277 * 159.03497 * 26 18 17 47 47 H 1.09000 * 110.39009 * 319.53165 * 29 13 12 48 48 H 1.08998 * 110.39025 * 81.91148 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4002 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0063 10 6 4.0537 -2.3706 0.0125 11 8 3.4472 -3.4210 0.0134 12 6 5.5607 -2.3706 0.0193 13 7 6.0503 -3.7556 0.0246 14 6 7.5161 -3.8027 -0.2094 15 6 7.9565 -5.1760 0.3391 16 1 8.0606 -5.9231 -0.4477 17 6 9.2470 -4.9916 1.1644 18 7 9.0310 -5.8235 2.3827 19 6 9.9220 -5.3965 3.4698 20 6 11.3502 -5.4271 2.9898 21 6 12.1055 -6.5749 3.1403 22 6 13.4140 -6.6047 2.6953 23 6 13.9706 -5.4827 2.1101 24 6 13.2170 -4.3332 1.9645 25 6 11.9068 -4.3052 2.4044 26 6 7.6085 -5.5801 2.7339 27 6 6.8692 -5.5563 1.3799 28 1 6.3887 -6.5080 1.1526 29 6 5.8745 -4.3771 1.3620 30 1 -0.4850 0.8401 -0.0004 31 1 3.8648 -0.3633 0.0059 32 1 5.9281 -1.8591 -0.8704 33 1 5.9199 -1.8544 0.9095 34 1 7.7330 -3.7323 -1.2753 35 1 8.0134 -2.9983 0.3325 36 1 10.1086 -5.3639 0.6102 37 1 9.3856 -3.9419 1.4232 38 1 9.6628 -4.3827 3.7749 39 1 9.8093 -6.0713 4.3182 40 1 11.6720 -7.4500 3.6015 41 1 14.0027 -7.5029 2.8088 42 1 14.9943 -5.5045 1.7665 43 1 13.6517 -3.4568 1.5069 44 1 11.3181 -3.4069 2.2909 45 1 7.5015 -4.6218 3.2419 46 1 7.2272 -6.3861 3.3608 47 1 6.1187 -3.6624 2.1480 48 1 4.8535 -4.7396 1.4811 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548755466.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:38 Heat of formation + Delta-G solvation = 19.050695 kcal Electronic energy + Delta-G solvation = -27624.825028 eV Core-core repulsion = 23872.798019 eV Total energy + Delta-G solvation = -3752.027009 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.56593 -39.42530 -38.27003 -36.39615 -33.95553 -33.05396 -31.65206 -31.25200 -30.82466 -30.40432 -27.59856 -25.92119 -25.60252 -23.95847 -22.92897 -21.91625 -21.44251 -20.72042 -19.64904 -19.24676 -18.20073 -17.01199 -16.80894 -15.91059 -15.80870 -15.61977 -15.36372 -15.00294 -14.96883 -14.47284 -14.29088 -14.09059 -13.69038 -13.58558 -13.20893 -12.99684 -12.88618 -12.76399 -12.39727 -12.28135 -12.18579 -11.95061 -11.82978 -11.40116 -11.33858 -11.27115 -11.14045 -11.09516 -10.86532 -10.76369 -10.60628 -10.56813 -9.96504 -9.54277 -9.22269 -9.16013 -8.75081 -8.58402 -8.16652 -8.05608 -6.29643 -3.80768 1.00539 1.09706 3.02247 3.07010 3.14958 3.38039 3.75773 3.86184 4.00048 4.11082 4.23773 4.51137 4.52535 4.58949 4.65248 4.70361 4.79959 4.92080 4.97326 4.98542 5.17750 5.21305 5.21712 5.27358 5.30219 5.33525 5.34898 5.47508 5.57498 5.61565 5.66937 5.68519 5.69889 5.74273 5.74942 5.86103 5.94021 6.11660 6.11935 6.19773 6.20362 6.29588 6.38396 6.55737 6.66841 6.73588 7.03015 7.11517 7.60148 8.16151 8.62300 8.97210 9.44274 9.86107 10.83600 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.023886 B = 0.002209 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.937011 B =12670.427610 C =13216.951027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.040 3.960 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.271 1.271 7 C -0.303 4.303 8 H 0.120 0.880 9 N -0.594 5.594 10 C 0.455 3.545 11 O -0.557 6.557 12 C 0.032 3.968 13 N -0.483 5.483 14 C 0.034 3.966 15 C -0.090 4.090 16 H 0.095 0.905 17 C 0.038 3.962 18 N -0.500 5.500 19 C 0.080 3.920 20 C -0.079 4.079 21 C -0.099 4.099 22 C -0.122 4.122 23 C -0.122 4.122 24 C -0.121 4.121 25 C -0.113 4.113 26 C 0.035 3.965 27 C -0.089 4.089 28 H 0.096 0.904 29 C 0.043 3.957 30 H 0.273 0.727 31 H 0.369 0.631 32 H 0.089 0.911 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.040 0.960 36 H 0.080 0.920 37 H 0.047 0.953 38 H 0.044 0.956 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.118 0.882 45 H 0.047 0.953 46 H 0.084 0.916 47 H 0.037 0.963 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.321 -8.349 6.204 30.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.163 4.163 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.431 4.431 8 H 0.137 0.863 9 N -0.234 5.234 10 C 0.240 3.760 11 O -0.438 6.438 12 C -0.100 4.100 13 N -0.206 5.206 14 C -0.094 4.094 15 C -0.109 4.109 16 H 0.114 0.886 17 C -0.090 4.090 18 N -0.224 5.224 19 C -0.048 4.048 20 C -0.079 4.079 21 C -0.118 4.118 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.139 4.139 25 C -0.132 4.132 26 C -0.093 4.093 27 C -0.108 4.108 28 H 0.114 0.886 29 C -0.085 4.085 30 H 0.083 0.917 31 H 0.202 0.798 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.058 0.942 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.104 0.896 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.136 0.864 45 H 0.065 0.935 46 H 0.102 0.898 47 H 0.056 0.944 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 27.486 -9.783 5.715 29.729 hybrid contribution 0.911 2.931 0.785 3.168 sum 28.397 -6.852 6.500 29.927 Atomic orbital electron populations 1.69622 1.05603 1.27417 1.49619 1.25036 0.95494 0.97930 0.97797 0.86673 0.79699 0.84124 0.78876 1.19615 1.20225 1.19632 1.19422 0.79221 0.96598 1.47905 0.86285 1.42214 1.07518 1.06100 1.67542 1.19609 0.87957 0.84553 0.83868 1.90553 1.69314 1.30847 1.53076 1.22085 0.95977 0.90341 1.01604 1.65102 1.11683 1.15736 1.28108 1.23299 0.89071 0.95659 1.01392 1.22618 0.93627 0.97144 0.97548 0.88631 1.23397 0.98182 0.95601 0.91772 1.65891 1.02655 1.50089 1.03737 1.21249 0.89244 0.99749 0.94570 1.19746 0.95150 0.94013 0.99040 1.21039 0.93889 0.97451 0.99397 1.21166 0.95482 0.98403 0.98927 1.21160 0.99875 0.93417 0.99567 1.21121 0.94324 0.98285 1.00153 1.21094 0.95436 0.98013 0.98647 1.23311 0.88139 1.00598 0.97264 1.22640 0.95068 0.99791 0.93346 0.88551 1.23285 1.01234 0.94629 0.89399 0.91662 0.79808 0.89240 0.93267 0.90063 0.94167 0.90177 0.93508 0.93740 0.89641 0.85907 0.86103 0.86231 0.86135 0.86436 0.93525 0.89783 0.94434 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.92 13.96 55.50 0.77 -25.15 16 2 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 3 Si 0.88 19.48 27.74 -169.99 -4.72 14.76 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.46 6.51 56.52 0.37 -5.09 16 7 C -0.30 -8.62 10.16 -14.93 -0.15 -8.77 16 8 H 0.12 3.87 7.39 -52.49 -0.39 3.49 16 9 N -0.59 -14.28 5.09 -10.96 -0.06 -14.34 16 10 C 0.45 10.46 7.63 -10.98 -0.08 10.38 16 11 O -0.56 -15.06 14.79 5.55 0.08 -14.98 16 12 C 0.03 0.54 5.32 -4.97 -0.03 0.52 16 13 N -0.48 -7.83 4.98 -231.61 -1.15 -8.98 16 14 C 0.03 0.42 5.99 -2.25 -0.01 0.41 16 15 C -0.09 -1.01 4.12 -88.08 -0.36 -1.37 16 16 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 17 C 0.04 0.38 4.48 -1.93 -0.01 0.37 16 18 N -0.50 -5.00 5.51 -231.10 -1.27 -6.27 16 19 C 0.08 0.69 5.23 -4.98 -0.03 0.67 16 20 C -0.08 -0.69 4.66 -104.62 -0.49 -1.17 16 21 C -0.10 -0.81 9.70 -39.59 -0.38 -1.20 16 22 C -0.12 -0.91 10.05 -39.58 -0.40 -1.30 16 23 C -0.12 -0.88 10.05 -39.59 -0.40 -1.28 16 24 C -0.12 -0.92 10.05 -39.59 -0.40 -1.31 16 25 C -0.11 -0.94 8.36 -39.58 -0.33 -1.27 16 26 C 0.03 0.36 6.03 -2.25 -0.01 0.35 16 27 C -0.09 -1.08 4.09 -88.09 -0.36 -1.44 16 28 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 29 C 0.04 0.65 5.48 -2.26 -0.01 0.63 16 30 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.37 7.80 5.76 -40.82 -0.24 7.57 16 32 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 33 H 0.05 0.75 7.77 -51.93 -0.40 0.35 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.04 0.45 7.01 -51.93 -0.36 0.09 16 36 H 0.08 0.80 7.68 -51.93 -0.40 0.40 16 37 H 0.05 0.45 6.23 -51.93 -0.32 0.13 16 38 H 0.04 0.38 7.82 -51.93 -0.41 -0.02 16 39 H 0.09 0.68 8.08 -51.93 -0.42 0.26 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 42 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 44 H 0.12 0.89 7.41 -52.49 -0.39 0.50 16 45 H 0.05 0.49 6.88 -51.93 -0.36 0.13 16 46 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.04 0.55 6.81 -51.93 -0.35 0.19 16 48 H 0.10 1.78 7.22 -51.93 -0.38 1.40 16 LS Contribution 376.92 15.07 5.68 5.68 Total: -1.00 -32.80 376.92 -11.60 -44.39 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -7.38 Total: 9.68 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -3.55 Total: -4.80 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -1.71 Total: -54.74 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.08 Total: -14.98 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.72 Total: 14.76 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.80 -11.60 -44.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548755466.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.444 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds