Wall clock time and date at job start Tue Mar 31 2020 05:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80999 * 1 3 3 C 1.76196 * 100.00423 * 2 1 4 4 N 1.32668 * 119.11879 * 0.02562 * 3 2 1 5 5 C 1.32065 * 120.97079 * 179.97438 * 4 3 2 6 6 C 1.38996 * 119.23317 * 359.97438 * 5 4 3 7 7 Cl 1.73599 * 120.80173 * 179.97438 * 6 5 4 8 8 C 1.39597 * 118.39762 * 0.02562 * 6 5 4 9 9 C 1.48379 * 120.51080 * 179.97438 * 8 6 5 10 10 O 1.21494 * 120.00253 * 0.02562 * 9 8 6 11 11 N 1.34784 * 119.99984 * 180.02562 * 9 8 6 12 12 C 1.46493 * 119.99864 * 179.72929 * 11 9 8 13 13 C 1.50698 * 109.47082 * 180.02562 * 12 11 9 14 14 O 1.21297 * 119.99729 * 359.97438 * 13 12 11 15 15 N 1.34778 * 120.00115 * 179.97438 * 13 12 11 16 16 C 1.37102 * 120.00015 * 179.97438 * 15 13 12 17 17 H 1.08005 * 119.99833 * 0.02562 * 16 15 13 18 18 C 1.38945 * 120.00287 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99917 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00197 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47243 * 59.99936 * 20 18 16 22 22 H 1.48499 * 109.46931 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47111 * 299.99952 * 20 18 16 24 24 N 1.32272 * 119.12529 * 180.25703 * 3 2 1 25 25 H 1.08999 * 109.47374 * 59.99857 * 1 2 3 26 26 H 1.09003 * 109.47445 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46748 * 299.99566 * 1 2 3 28 28 H 1.07998 * 120.38265 * 179.97438 * 5 4 3 29 29 H 0.97000 * 119.99339 * 0.02562 * 11 9 8 30 30 H 1.09007 * 109.47196 * 299.99538 * 12 11 9 31 31 H 1.09006 * 109.47678 * 59.99732 * 12 11 9 32 32 H 0.96995 * 120.00114 * 359.97438 * 15 13 12 33 33 H 0.97001 * 120.00536 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1161 1.7352 0.0000 4 7 1.0868 2.5723 0.0005 5 6 1.2741 3.8796 0.0010 6 6 2.5711 4.3795 0.0016 7 17 2.8642 6.0906 0.0016 8 6 3.6322 3.4725 0.0010 9 6 5.0354 3.9548 0.0010 10 8 5.2680 5.1473 0.0020 11 7 6.0522 3.0700 -0.0001 12 6 7.4375 3.5462 -0.0061 13 6 8.3744 2.3658 -0.0067 14 8 7.9286 1.2377 -0.0021 15 7 9.7076 2.5636 -0.0125 16 6 10.5599 1.4897 -0.0125 17 1 10.1630 0.4852 -0.0084 18 6 11.9343 1.6935 -0.0179 19 7 12.4173 2.9157 -0.0224 20 14 13.0956 0.2303 -0.0187 21 1 12.8507 -0.5953 -1.2284 22 1 14.5000 0.7130 -0.0241 23 1 12.8593 -0.5898 1.1965 24 7 3.3658 2.1684 -0.0052 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.4293 4.5524 0.0010 29 1 5.8664 2.1179 -0.0012 30 1 7.6111 4.1477 -0.8984 31 1 7.6173 4.1527 0.8816 32 1 10.0641 3.4656 -0.0165 33 1 13.3768 3.0581 -0.0265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000553758233.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:55 Heat of formation + Delta-G solvation = -18.826346 kcal Electronic energy + Delta-G solvation = -22258.102849 eV Core-core repulsion = 18471.828195 eV Total energy + Delta-G solvation = -3786.274654 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 330.034 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.50311 -39.46531 -38.12245 -36.91080 -34.69603 -34.33482 -33.66653 -32.23252 -31.38162 -29.37658 -28.16516 -25.81271 -25.01383 -24.29360 -21.24239 -19.73688 -18.93808 -18.58329 -18.04058 -17.12482 -16.48838 -16.09157 -15.74651 -15.39772 -15.14025 -15.09573 -14.52787 -14.33795 -14.06151 -14.01159 -13.68013 -13.41473 -13.09873 -12.54471 -12.23268 -12.03329 -11.93183 -11.68705 -11.59737 -11.33754 -11.09649 -10.96379 -10.50108 -10.44115 -10.29941 -10.10133 -9.62248 -9.49917 -8.92794 -8.63927 -8.11587 -8.09933 -6.51108 -3.93094 -0.07539 0.28924 0.76187 1.68202 1.76898 2.49486 2.84724 3.14598 3.22466 3.26726 3.31769 3.53183 3.73421 3.91543 4.07271 4.19021 4.28110 4.77662 4.81498 4.83819 5.07102 5.16912 5.37110 5.44727 5.81339 5.88885 6.03252 6.10538 6.50352 7.16108 7.46594 7.62845 7.91064 8.17172 8.45274 9.04884 9.38688 9.86800 10.65708 Molecular weight = 330.03amu Principal moments of inertia in cm(-1) A = 0.014811 B = 0.002835 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.081517 B = 9873.509549 C =11743.134351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 S 0.033 5.967 3 C 0.290 3.710 4 N -0.503 5.503 5 C 0.179 3.821 6 C -0.113 4.113 7 Cl 0.003 6.997 8 C 0.167 3.833 9 C 0.560 3.440 10 O -0.510 6.510 11 N -0.678 5.678 12 C 0.107 3.893 13 C 0.427 3.573 14 O -0.592 6.592 15 N -0.548 5.548 16 C -0.305 4.305 17 H 0.106 0.894 18 C 0.026 3.974 19 N -0.895 5.895 20 Si 0.934 3.066 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 N -0.459 5.459 25 H 0.092 0.908 26 H 0.109 0.891 27 H 0.092 0.908 28 H 0.188 0.812 29 H 0.422 0.578 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.396 0.604 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.059 1.870 0.033 24.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 S 0.267 5.733 3 C -0.085 4.085 4 N -0.221 5.221 5 C 0.007 3.993 6 C -0.150 4.150 7 Cl 0.032 6.968 8 C 0.015 3.985 9 C 0.341 3.659 10 O -0.385 6.385 11 N -0.332 5.332 12 C -0.021 4.021 13 C 0.212 3.788 14 O -0.478 6.478 15 N -0.183 5.183 16 C -0.434 4.434 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.535 5.535 20 Si 0.760 3.240 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.197 1.197 24 N -0.179 5.179 25 H 0.111 0.889 26 H 0.127 0.873 27 H 0.111 0.889 28 H 0.205 0.795 29 H 0.263 0.737 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.230 0.770 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.303 0.152 0.031 23.303 hybrid contribution 0.094 1.622 -0.003 1.625 sum -23.209 1.774 0.027 23.276 Atomic orbital electron populations 1.23653 0.94461 1.06714 1.07303 1.86284 1.06228 0.91354 1.89396 1.25190 0.86558 1.01560 0.95195 1.68803 1.34114 1.03557 1.15641 1.23345 0.94873 0.91504 0.89538 1.22713 0.95731 0.89965 1.06590 1.98442 1.96155 1.06275 1.95941 1.21700 0.95396 0.88184 0.93239 1.17519 0.83023 0.86159 0.79154 1.90882 1.83651 1.14592 1.49354 1.45582 1.04850 1.11777 1.71001 1.21088 0.80459 0.96776 1.03729 1.19667 0.83651 0.89571 0.85902 1.90531 1.76235 1.23995 1.57041 1.41768 1.03740 1.10118 1.62664 1.19695 0.86676 0.88760 1.48313 0.87661 1.25321 0.97659 0.97931 0.96750 1.69604 1.14568 1.20095 1.49271 0.85869 0.78410 0.80482 0.79203 1.19740 1.20869 1.19745 1.68649 1.21602 1.14370 1.13240 0.88930 0.87253 0.88931 0.79541 0.73729 0.89265 0.89228 0.77026 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.61 101.05 0.97 0.04 16 2 S 0.03 0.33 22.89 -107.50 -2.46 -2.13 16 3 C 0.29 3.59 7.85 -90.99 -0.71 2.87 16 4 N -0.50 -5.31 9.11 -13.43 -0.12 -5.43 16 5 C 0.18 1.68 11.13 -17.17 -0.19 1.49 16 6 C -0.11 -1.35 6.40 -38.79 -0.25 -1.60 16 7 Cl 0.00 0.03 26.22 -51.86 -1.36 -1.33 16 8 C 0.17 2.43 6.79 -82.63 -0.56 1.87 16 9 C 0.56 9.25 7.82 -12.08 -0.09 9.16 16 10 O -0.51 -8.97 14.13 5.37 0.08 -8.89 16 11 N -0.68 -11.96 5.52 -62.26 -0.34 -12.30 16 12 C 0.11 1.95 6.15 -5.20 -0.03 1.92 16 13 C 0.43 9.82 7.85 -10.99 -0.09 9.74 16 14 O -0.59 -15.39 15.24 5.54 0.08 -15.31 16 15 N -0.55 -13.55 5.29 -10.96 -0.06 -13.60 16 16 C -0.31 -8.29 9.68 -14.93 -0.14 -8.44 16 17 H 0.11 2.98 7.16 -52.48 -0.38 2.60 16 18 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 19 N -0.90 -23.85 13.05 55.50 0.72 -23.13 16 20 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 24 N -0.46 -6.69 9.66 -10.01 -0.10 -6.79 16 25 H 0.09 0.55 8.11 -51.92 -0.42 0.13 16 26 H 0.11 0.44 8.14 -51.91 -0.42 0.01 16 27 H 0.09 0.55 8.11 -51.91 -0.42 0.13 16 28 H 0.19 1.01 8.06 -52.49 -0.42 0.58 16 29 H 0.42 7.84 6.82 -40.82 -0.28 7.56 16 30 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.40 9.35 7.90 -40.82 -0.32 9.03 16 33 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 329.65 15.07 4.97 4.97 Total: -1.00 -31.25 329.65 -7.45 -38.70 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -2.64 Total: 12.05 kcal Atomic # 6 Polarization: 18.84 SS G_CDS: -1.20 Total: 17.64 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: 0.10 Total: -61.25 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: 0.16 Total: -24.20 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 0.33 SS G_CDS: -2.46 Total: -2.13 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -1.36 Total: -1.33 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.25 -7.45 -38.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553758233.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.875 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds