Wall clock time and date at job start Tue Mar 31 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46898 * 110.99956 * 2 1 4 4 C 1.50706 * 109.46982 * 293.94426 * 3 2 1 5 5 H 1.07998 * 119.99503 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00434 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99826 * 359.72891 * 6 4 3 8 8 Si 1.86800 * 120.00406 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47364 * 179.72558 * 8 6 4 10 10 H 1.48508 * 109.46883 * 299.72681 * 8 6 4 11 11 H 1.48497 * 109.46870 * 59.72491 * 8 6 4 12 12 C 1.46904 * 110.99726 * 123.94466 * 2 1 3 13 13 C 1.53004 * 109.47057 * 66.05015 * 12 2 1 14 14 H 1.09003 * 109.47115 * 305.00101 * 13 12 2 15 15 O 1.42902 * 109.46939 * 64.99930 * 13 12 2 16 16 C 1.52991 * 109.47337 * 184.99821 * 13 12 2 17 17 N 1.46904 * 109.47177 * 179.97438 * 16 13 12 18 18 C 1.46904 * 110.99961 * 180.02562 * 17 16 13 19 19 H 1.09009 * 109.50229 * 325.07803 * 18 17 16 20 20 C 1.53113 * 109.50299 * 85.19533 * 18 17 16 21 21 C 1.53124 * 109.15951 * 177.59377 * 20 18 17 22 22 C 1.53033 * 109.27877 * 302.34920 * 21 20 18 23 23 N 1.46847 * 109.52593 * 59.17774 * 22 21 20 24 24 C 1.46900 * 111.00278 * 174.16276 * 23 22 21 25 25 C 1.53001 * 109.46856 * 314.21090 * 24 23 22 26 26 C 1.52998 * 109.47202 * 180.02562 * 25 24 23 27 27 O 1.42902 * 109.47349 * 179.97438 * 26 25 24 28 28 C 1.46849 * 111.19929 * 298.25763 * 23 22 21 29 29 H 1.09004 * 109.46697 * 60.00829 * 1 2 3 30 30 H 1.09007 * 109.47298 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47728 * 300.00490 * 1 2 3 32 32 H 1.09004 * 109.47320 * 173.95233 * 3 2 1 33 33 H 1.08993 * 109.47439 * 53.94811 * 3 2 1 34 34 H 0.97000 * 120.00236 * 0.27947 * 7 6 4 35 35 H 1.08999 * 109.47236 * 186.04673 * 12 2 1 36 36 H 1.09002 * 109.47467 * 306.05206 * 12 2 1 37 37 H 0.96698 * 114.00529 * 60.00118 * 15 13 12 38 38 H 1.09003 * 109.47247 * 300.00199 * 16 13 12 39 39 H 1.09001 * 109.46963 * 60.00345 * 16 13 12 40 40 H 1.00900 * 110.99684 * 56.05071 * 17 16 13 41 41 H 1.08994 * 109.52610 * 297.50144 * 20 18 17 42 42 H 1.08999 * 109.52530 * 57.69562 * 20 18 17 43 43 H 1.09000 * 109.50688 * 182.40838 * 21 20 18 44 44 H 1.08997 * 109.50211 * 62.28899 * 21 20 18 45 45 H 1.08997 * 109.46661 * 299.16084 * 22 21 20 46 46 H 1.08999 * 109.46342 * 179.19440 * 22 21 20 47 47 H 1.09002 * 109.47305 * 74.20812 * 24 23 22 48 48 H 1.09003 * 109.47167 * 194.21153 * 24 23 22 49 49 H 1.09002 * 109.46936 * 299.99948 * 25 24 23 50 50 H 1.08993 * 109.47774 * 59.99567 * 25 24 23 51 51 H 1.09002 * 109.46936 * 299.99708 * 26 25 24 52 52 H 1.09003 * 109.47190 * 59.99836 * 26 25 24 53 53 H 0.96701 * 114.00250 * 179.97438 * 27 26 25 54 54 H 1.09002 * 109.46229 * 301.73102 * 28 23 22 55 55 H 1.08992 * 109.45589 * 181.74781 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 -1.2986 5 1 1.0741 1.5113 -2.0486 6 6 2.0268 3.3493 -1.5288 7 7 2.7068 4.0038 -0.6128 8 14 1.5820 4.1870 -3.1381 9 1 2.1080 5.5757 -3.1353 10 1 2.1795 3.4336 -4.2699 11 1 0.1050 4.2173 -3.2885 12 6 1.9953 -0.7658 1.1378 13 6 1.6314 -2.2425 0.9707 14 1 0.5531 -2.3388 0.8435 15 8 2.2956 -2.7696 -0.1796 16 6 2.0698 -3.0197 2.2134 17 7 1.7198 -4.4374 2.0532 18 6 2.1262 -5.2163 3.2306 19 1 3.0551 -4.8111 3.6321 20 6 1.0306 -5.1392 4.2975 21 6 1.4350 -6.0019 5.4963 22 6 1.6668 -7.4404 5.0283 23 7 2.7238 -7.4607 4.0091 24 6 3.0696 -8.8389 3.6366 25 6 3.2224 -9.6860 4.9015 26 6 3.5833 -11.1213 4.5137 27 8 3.7266 -11.9123 5.6951 28 6 2.3379 -6.6775 2.8282 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.0797 1.3444 0.1083 33 1 1.5610 1.9274 0.8308 34 1 2.9376 3.5690 0.2230 35 1 3.0796 -0.6610 1.1758 36 1 1.5609 -0.3870 2.0629 37 1 3.2601 -2.7167 -0.1356 38 1 3.1481 -2.9233 2.3406 39 1 1.5631 -2.6176 3.0908 40 1 2.1251 -4.8169 1.2108 41 1 0.9067 -4.1050 4.6184 42 1 0.0923 -5.5081 3.8834 43 1 0.6397 -5.9854 6.2414 44 1 2.3528 -5.6093 5.9340 45 1 0.7448 -7.8371 4.6032 46 1 1.9687 -8.0542 5.8769 47 1 2.2788 -9.2562 3.0132 48 1 4.0083 -8.8409 3.0824 49 1 4.0133 -9.2687 5.5249 50 1 2.2839 -9.6840 5.4558 51 1 2.7927 -11.5388 3.8901 52 1 4.5221 -11.1229 3.9597 53 1 3.9553 -12.8363 5.5246 54 1 1.4127 -7.0777 2.4135 55 1 3.1275 -6.7372 2.0792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563137821.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:29 Heat of formation + Delta-G solvation = -131.261353 kcal Electronic energy + Delta-G solvation = -28529.554861 eV Core-core repulsion = 24599.534007 eV Total energy + Delta-G solvation = -3930.020854 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 329.247 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.55381 -39.58816 -38.12175 -37.50448 -36.35756 -34.85025 -34.28056 -32.24137 -31.56900 -29.72928 -28.66866 -27.18115 -26.73575 -25.19998 -23.92744 -23.73879 -22.74628 -22.01576 -21.44383 -20.66888 -18.92805 -18.33270 -17.69480 -17.26641 -17.15602 -16.76622 -16.43110 -16.35125 -16.03140 -15.85825 -15.59080 -15.35132 -15.25285 -15.17705 -14.81265 -14.29930 -14.17423 -13.98609 -13.92841 -13.68167 -13.47457 -13.35646 -13.17048 -13.03228 -12.59728 -12.56329 -12.50324 -12.41609 -12.35449 -12.14575 -12.09111 -11.92142 -11.77148 -11.64737 -11.42263 -11.31631 -11.07073 -10.87953 -10.63221 -10.57737 -9.43971 -9.33821 -9.09675 -8.69004 -6.39636 1.53707 1.62214 1.82010 2.52446 2.57549 2.97936 3.13672 3.33749 3.43956 3.60156 3.72064 3.87470 3.91330 3.96185 4.06478 4.08919 4.15886 4.19172 4.24233 4.33230 4.34446 4.38019 4.45035 4.48141 4.52710 4.58001 4.58221 4.61140 4.67335 4.68469 4.74428 4.77011 4.84220 4.92878 4.94041 4.94538 5.03265 5.08418 5.12432 5.17320 5.18029 5.20314 5.38865 5.75784 5.91555 5.96499 6.05008 6.11667 6.34421 6.40207 6.43118 6.62795 6.86987 6.88573 7.40574 8.69730 Molecular weight = 329.25amu Principal moments of inertia in cm(-1) A = 0.035571 B = 0.001596 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.980007 B =17534.158004 C =17832.465580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.534 5.534 3 C 0.193 3.807 4 C -0.600 4.600 5 H 0.053 0.947 6 C -0.037 4.037 7 N -0.938 5.938 8 Si 1.122 2.878 9 H -0.283 1.283 10 H -0.270 1.270 11 H -0.269 1.269 12 C 0.023 3.977 13 C 0.130 3.870 14 H 0.095 0.905 15 O -0.559 6.559 16 C 0.043 3.957 17 N -0.683 5.683 18 C 0.095 3.905 19 H 0.044 0.956 20 C -0.107 4.107 21 C -0.114 4.114 22 C 0.049 3.951 23 N -0.544 5.544 24 C 0.062 3.938 25 C -0.120 4.120 26 C 0.076 3.924 27 O -0.598 6.598 28 C 0.062 3.938 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.009 0.991 32 H 0.000 1.000 33 H -0.044 1.044 34 H 0.253 0.747 35 H 0.068 0.932 36 H 0.033 0.967 37 H 0.379 0.621 38 H 0.040 0.960 39 H 0.079 0.921 40 H 0.349 0.651 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.032 0.968 46 H 0.088 0.912 47 H 0.040 0.960 48 H 0.083 0.917 49 H 0.066 0.934 50 H 0.068 0.932 51 H 0.055 0.945 52 H 0.057 0.943 53 H 0.398 0.602 54 H 0.039 0.961 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.035 -31.652 12.286 33.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.258 5.258 3 C 0.067 3.933 4 C -0.638 4.638 5 H 0.071 0.929 6 C -0.234 4.234 7 N -0.575 5.575 8 Si 0.942 3.058 9 H -0.208 1.208 10 H -0.195 1.195 11 H -0.195 1.195 12 C -0.106 4.106 13 C 0.070 3.930 14 H 0.113 0.887 15 O -0.365 6.365 16 C -0.087 4.087 17 N -0.316 5.316 18 C -0.015 4.015 19 H 0.062 0.938 20 C -0.146 4.146 21 C -0.152 4.152 22 C -0.079 4.079 23 N -0.269 5.269 24 C -0.065 4.065 25 C -0.158 4.158 26 C -0.002 4.002 27 O -0.407 6.407 28 C -0.066 4.066 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.028 0.972 32 H 0.018 0.982 33 H -0.027 1.027 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.227 0.773 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.169 0.831 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.051 0.949 46 H 0.106 0.894 47 H 0.059 0.941 48 H 0.102 0.898 49 H 0.085 0.915 50 H 0.087 0.913 51 H 0.074 0.926 52 H 0.076 0.924 53 H 0.248 0.752 54 H 0.057 0.943 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.656 -29.733 11.523 31.895 hybrid contribution 0.683 -1.363 1.325 2.020 sum 0.027 -31.097 12.848 33.646 Atomic orbital electron populations 1.22224 0.87646 1.01019 0.99768 1.61868 1.08087 1.14134 1.41676 1.19564 0.93323 0.85288 0.95156 1.22299 1.38394 1.00168 1.02941 0.92866 1.27426 0.93578 0.95781 1.06613 1.70936 1.38581 1.40101 1.07915 0.82876 0.77011 0.75100 0.70780 1.20796 1.19536 1.19464 1.22861 1.00186 0.95607 0.91949 1.21771 0.97749 0.88545 0.84911 0.88726 1.86575 1.24089 1.83626 1.42167 1.22485 0.98856 0.89216 0.98156 1.60361 1.64433 1.01532 1.05232 1.21456 0.96600 0.92466 0.90976 0.93786 1.21566 0.98148 0.99912 0.94945 1.21575 1.01928 0.94310 0.97392 1.22261 0.92382 0.97624 0.95595 1.61925 1.41291 1.12565 1.11158 1.21986 1.01277 0.86792 0.96487 1.21597 1.02612 0.93699 0.97907 1.22139 1.00427 0.90866 0.86736 1.86417 1.93819 1.26981 1.33486 1.22101 0.99675 0.92686 0.92128 0.92742 0.90213 0.97207 0.98211 1.02676 0.93822 0.91377 0.94912 0.77292 0.94159 0.90240 0.83092 0.92455 0.92156 0.90142 0.91652 0.94940 0.89426 0.94136 0.89834 0.91491 0.91335 0.92633 0.92427 0.75171 0.94292 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.68 9.17 127.69 1.17 2.85 16 2 N -0.53 -23.54 4.70 -927.03 -4.36 -27.90 16 3 C 0.19 10.44 4.03 85.56 0.34 10.79 16 4 C -0.60 -35.12 8.52 25.60 0.22 -34.91 16 5 H 0.05 3.11 7.10 -2.91 -0.02 3.09 16 6 C -0.04 -2.16 5.46 84.65 0.46 -1.70 16 7 N -0.94 -58.65 13.65 21.45 0.29 -58.36 16 8 Si 1.12 51.11 29.90 68.60 2.05 53.16 16 9 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 11 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 12 C 0.02 0.79 4.60 86.30 0.40 1.19 16 13 C 0.13 3.56 3.20 30.59 0.10 3.65 16 14 H 0.09 2.80 6.26 -2.39 -0.01 2.78 16 15 O -0.56 -15.93 12.62 -148.98 -1.88 -17.81 16 16 C 0.04 0.93 5.19 86.30 0.45 1.37 16 17 N -0.68 -13.45 6.31 -491.29 -3.10 -16.55 16 18 C 0.09 1.66 2.66 44.97 0.12 1.78 16 19 H 0.04 0.86 7.80 -2.38 -0.02 0.84 16 20 C -0.11 -1.84 5.49 30.67 0.17 -1.67 16 21 C -0.11 -1.63 6.09 30.65 0.19 -1.44 16 22 C 0.05 0.68 4.85 86.32 0.42 1.10 16 23 N -0.54 -8.00 4.81 -896.36 -4.31 -12.31 16 24 C 0.06 0.72 5.27 86.30 0.46 1.17 16 25 C -0.12 -1.40 4.83 30.59 0.15 -1.25 16 26 C 0.08 0.70 7.05 71.98 0.51 1.21 16 27 O -0.60 -6.99 13.66 -148.98 -2.04 -9.02 16 28 C 0.06 0.97 4.69 86.33 0.41 1.37 16 29 H 0.05 2.39 6.86 -2.38 -0.02 2.38 16 30 H 0.08 2.71 6.21 -2.38 -0.01 2.70 16 31 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.00 -0.01 7.80 -2.39 -0.02 -0.03 16 33 H -0.04 -2.55 7.98 -2.39 -0.02 -2.57 16 34 H 0.25 16.00 7.22 -92.71 -0.67 15.33 16 35 H 0.07 2.31 7.93 -2.39 -0.02 2.29 16 36 H 0.03 1.10 8.12 -2.39 -0.02 1.08 16 37 H 0.38 8.59 9.05 -74.06 -0.67 7.92 16 38 H 0.04 0.82 8.06 -2.39 -0.02 0.80 16 39 H 0.08 1.71 7.50 -2.39 -0.02 1.69 16 40 H 0.35 6.75 7.75 -89.69 -0.69 6.06 16 41 H 0.06 1.04 7.53 -2.39 -0.02 1.03 16 42 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.09 1.12 5.81 -2.39 -0.01 1.11 16 47 H 0.04 0.44 8.08 -2.39 -0.02 0.42 16 48 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.07 0.86 6.21 -2.39 -0.01 0.85 16 51 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 52 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 53 H 0.40 0.99 9.12 -74.06 -0.68 0.32 16 54 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 55 H 0.08 1.13 8.11 -2.39 -0.02 1.12 16 Total: -1.00 -71.76 420.00 -8.86 -80.61 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -1.07 Total: 22.67 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 5.55 Total: -14.48 kcal Atomic # 7 Polarization: -103.65 SS G_CDS: -11.47 Total: -115.12 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -3.92 Total: -26.83 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 2.05 Total: 53.16 kcal Total: -71.76 -8.86 -80.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563137821.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.648 kcal (2) G-P(sol) polarization free energy of solvation -71.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds