Wall clock time and date at job start Tue Mar 31 2020 06:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86800 * 119.99725 * 2 1 4 4 H 1.48501 * 109.47068 * 94.66517 * 3 2 1 5 5 H 1.48502 * 109.46700 * 214.65997 * 3 2 1 6 6 H 1.48500 * 109.47330 * 334.66060 * 3 2 1 7 7 C 1.40047 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99921 * 8.74211 * 7 2 1 9 9 C 1.46379 * 119.99657 * 188.75283 * 7 2 1 10 10 O 1.21690 * 120.00064 * 14.55131 * 9 7 2 11 11 N 1.34777 * 119.99727 * 194.55855 * 9 7 2 12 12 C 1.46960 * 120.59262 * 354.79607 * 11 9 7 13 13 C 1.53815 * 108.40011 * 124.75907 * 12 11 9 14 14 N 1.46962 * 108.57518 * 49.63444 * 13 12 11 15 15 S 1.65609 * 120.59154 * 124.67129 * 14 13 12 16 16 O 1.42094 * 104.27704 * 26.04874 * 15 14 13 17 17 O 1.42105 * 104.27647 * 153.90572 * 15 14 13 18 18 C 1.81394 * 104.44899 * 269.97609 * 15 14 13 19 19 C 1.52997 * 109.47263 * 179.97438 * 18 15 14 20 20 F 1.39909 * 109.46958 * 60.00328 * 19 18 15 21 21 F 1.39900 * 109.47645 * 179.97438 * 19 18 15 22 22 F 1.39899 * 109.47293 * 300.00548 * 19 18 15 23 23 C 1.46966 * 118.81620 * 304.64948 * 14 13 12 24 24 C 1.46962 * 120.59158 * 175.07792 * 11 9 7 25 25 H 0.97005 * 120.00410 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.61057 * 244.54074 * 12 11 9 27 27 H 1.09003 * 109.61474 * 5.05728 * 12 11 9 28 28 H 1.09007 * 109.74152 * 289.85056 * 13 12 11 29 29 H 1.08997 * 109.53805 * 169.30482 * 13 12 11 30 30 H 1.09003 * 109.47382 * 300.00013 * 18 15 14 31 31 H 1.09007 * 109.47112 * 59.99866 * 18 15 14 32 32 H 1.09000 * 109.61092 * 295.48152 * 23 14 13 33 33 H 1.08997 * 109.75186 * 175.05350 * 23 14 13 34 34 H 1.08998 * 109.61403 * 354.94412 * 24 11 9 35 35 H 1.08999 * 109.61021 * 115.46148 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.5867 1.9895 1.3954 5 1 3.4855 1.4706 -0.7963 6 1 1.3923 2.6791 -0.5992 7 6 2.0069 -1.2129 0.0005 8 1 1.4763 -2.1428 -0.1412 9 6 3.4579 -1.2201 0.1935 10 8 4.0210 -0.2261 0.6125 11 7 4.1702 -2.3278 -0.0932 12 6 3.4935 -3.5701 -0.4911 13 6 4.0668 -4.0234 -1.8445 14 7 5.5339 -4.0121 -1.7588 15 16 6.4092 -5.3732 -2.1109 16 8 5.5788 -6.1025 -3.0040 17 8 7.6748 -4.8782 -2.5263 18 6 6.5545 -6.2409 -0.5246 19 6 7.3524 -7.5316 -0.7205 20 9 8.6292 -7.2221 -1.2014 21 9 7.4650 -8.2005 0.5030 22 9 6.6931 -8.3520 -1.6422 23 6 6.2104 -2.7713 -1.3554 24 6 5.6373 -2.3165 -0.0075 25 1 -0.4851 0.8401 -0.0004 26 1 3.6702 -4.3398 0.2603 27 1 2.4230 -3.3888 -0.5879 28 1 3.7410 -3.3409 -2.6295 29 1 3.7211 -5.0328 -2.0672 30 1 7.0679 -5.6015 0.1936 31 1 5.5597 -6.4823 -0.1500 32 1 6.0373 -1.9997 -2.1056 33 1 7.2809 -2.9510 -1.2559 34 1 5.9831 -1.3071 0.2152 35 1 5.9632 -2.9990 0.7775 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564226381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:07 Heat of formation + Delta-G solvation = -245.026207 kcal Electronic energy + Delta-G solvation = -27530.441430 eV Core-core repulsion = 22855.332452 eV Total energy + Delta-G solvation = -4675.108978 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.069 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.67620 -48.17893 -48.13757 -39.07640 -37.56741 -36.77896 -36.32111 -33.23923 -32.97396 -32.23483 -31.28200 -27.45903 -26.05341 -24.44108 -23.62839 -21.85081 -20.01155 -19.51320 -19.13698 -18.66122 -18.29565 -17.73284 -16.74153 -16.45163 -16.23336 -15.91866 -15.18124 -15.02543 -14.93677 -14.71607 -14.64050 -14.55740 -14.28795 -14.25441 -14.22391 -13.96616 -13.75784 -12.88804 -12.83260 -12.72985 -12.49856 -12.44774 -12.32472 -12.15734 -11.94232 -11.64630 -11.33995 -11.26934 -10.93153 -10.78310 -10.50286 -9.70357 -9.34118 -9.12986 -8.06650 -7.70975 -6.73545 -4.97184 -0.37190 1.80778 2.30815 3.00029 3.27099 3.33308 3.36352 3.41271 3.63223 3.64658 3.79368 3.97180 4.08669 4.31640 4.43370 4.48827 4.66783 5.04905 5.21480 5.22631 5.38199 5.41486 5.62951 5.83435 5.84382 6.04910 6.06250 6.26311 6.43240 6.89187 7.42856 7.71537 8.14759 8.56195 8.97227 9.86808 10.26737 Molecular weight = 330.07amu Principal moments of inertia in cm(-1) A = 0.027252 B = 0.003394 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.182794 B = 8246.719579 C = 8349.451239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.103 3.897 3 Si 0.966 3.034 4 H -0.278 1.278 5 H -0.264 1.264 6 H -0.321 1.321 7 C -0.534 4.534 8 H 0.092 0.908 9 C 0.553 3.447 10 O -0.614 6.614 11 N -0.631 5.631 12 C 0.103 3.897 13 C 0.100 3.900 14 N -0.983 5.983 15 S 2.615 3.385 16 O -0.925 6.925 17 O -0.927 6.927 18 C -0.720 4.720 19 C 0.475 3.525 20 F -0.170 7.170 21 F -0.168 7.168 22 F -0.169 7.169 23 C 0.103 3.897 24 C 0.102 3.898 25 H 0.283 0.717 26 H 0.051 0.949 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.175 0.825 31 H 0.176 0.824 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.503 -13.836 -1.859 18.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.116 4.116 3 Si 0.799 3.201 4 H -0.204 1.204 5 H -0.190 1.190 6 H -0.252 1.252 7 C -0.570 4.570 8 H 0.110 0.890 9 C 0.363 3.637 10 O -0.505 6.505 11 N -0.366 5.366 12 C -0.023 4.023 13 C -0.025 4.025 14 N -0.823 5.823 15 S 2.700 3.300 16 O -0.915 6.915 17 O -0.917 6.917 18 C -0.841 4.841 19 C 0.420 3.580 20 F -0.151 7.151 21 F -0.149 7.149 22 F -0.150 7.150 23 C -0.023 4.023 24 C -0.024 4.024 25 H 0.094 0.906 26 H 0.069 0.931 27 H 0.133 0.867 28 H 0.106 0.894 29 H 0.114 0.886 30 H 0.193 0.807 31 H 0.194 0.806 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.947 -13.608 -2.438 18.271 hybrid contribution 0.184 0.244 0.937 0.986 sum 12.131 -13.363 -1.501 18.110 Atomic orbital electron populations 1.69547 1.07960 1.30187 1.37700 1.25758 0.94732 1.02063 0.89051 0.85237 0.77792 0.77441 0.79674 1.20434 1.18980 1.25185 1.20751 0.88922 0.95815 1.51474 0.89030 1.18364 0.88332 0.80173 0.76801 1.90223 1.72610 1.33755 1.53941 1.47612 1.04106 1.11927 1.72946 1.22044 1.00127 0.86811 0.93272 1.22195 0.77020 1.03264 1.00060 1.57622 1.16695 1.23897 1.84127 1.05250 0.74705 0.74415 0.75628 1.93656 1.67547 1.72985 1.57334 1.93652 1.42390 1.77640 1.78029 1.32472 1.11624 1.06994 1.33041 1.19359 0.78357 0.85195 0.75127 1.93317 1.40867 1.92769 1.88142 1.93245 1.96043 1.82208 1.43446 1.93318 1.80389 1.74813 1.66505 1.22039 0.96223 0.85687 0.98335 1.21648 0.83301 1.03003 0.94404 0.90647 0.93114 0.86688 0.89356 0.88571 0.80678 0.80579 0.89752 0.88637 0.88075 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.18 13.92 55.55 0.77 -21.41 16 2 C 0.10 2.75 5.52 -17.37 -0.10 2.66 16 3 Si 0.97 24.21 25.88 -169.99 -4.40 19.81 16 4 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.26 -6.90 6.64 56.52 0.38 -6.53 16 6 H -0.32 -7.67 7.11 56.52 0.40 -7.27 16 7 C -0.53 -13.79 9.35 -35.63 -0.33 -14.13 16 8 H 0.09 2.30 5.98 -52.49 -0.31 1.99 16 9 C 0.55 13.37 7.29 -12.98 -0.09 13.27 16 10 O -0.61 -16.43 11.83 5.20 0.06 -16.37 16 11 N -0.63 -11.70 2.94 -173.88 -0.51 -12.21 16 12 C 0.10 1.51 6.54 -3.37 -0.02 1.48 16 13 C 0.10 1.24 6.50 -3.37 -0.02 1.22 16 14 N -0.98 -11.59 3.20 -113.00 -0.36 -11.95 16 15 S 2.61 29.36 5.07 -107.50 -0.55 28.81 16 16 O -0.93 -12.53 16.21 -57.54 -0.93 -13.46 16 17 O -0.93 -12.53 16.22 -57.54 -0.93 -13.46 16 18 C -0.72 -5.61 6.19 37.16 0.23 -5.38 16 19 C 0.48 4.62 3.14 37.16 0.12 4.73 16 20 F -0.17 -1.82 16.59 2.25 0.04 -1.78 16 21 F -0.17 -1.62 17.32 2.25 0.04 -1.58 16 22 F -0.17 -1.81 16.59 2.25 0.04 -1.78 16 23 C 0.10 1.28 6.48 -3.60 -0.02 1.25 16 24 C 0.10 1.52 6.58 -3.60 -0.02 1.49 16 25 H 0.28 7.05 8.29 -40.82 -0.34 6.71 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.12 1.86 5.33 -51.93 -0.28 1.58 16 28 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.10 0.96 7.06 -51.93 -0.37 0.59 16 30 H 0.18 0.94 8.14 -51.92 -0.42 0.52 16 31 H 0.18 0.95 8.14 -51.92 -0.42 0.52 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.10 0.95 7.07 -51.93 -0.37 0.59 16 34 H 0.10 1.69 7.02 -51.93 -0.36 1.33 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 313.80 15.07 4.73 4.73 Total: -1.00 -33.32 313.80 -5.66 -38.97 By element: Atomic # 1 Polarization: -1.55 SS G_CDS: -3.38 Total: -4.93 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -0.27 Total: 6.60 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -0.10 Total: -45.57 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -1.80 Total: -43.29 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.11 Total: -5.13 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -4.40 Total: 19.81 kcal Atomic # 16 Polarization: 29.36 SS G_CDS: -0.55 Total: 28.81 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.32 -5.66 -38.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564226381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.053 kcal (2) G-P(sol) polarization free energy of solvation -33.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds