Wall clock time and date at job start Tue Mar 31 2020 05:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46897 * 110.99790 * 2 1 4 4 C 1.50697 * 109.47467 * 293.95670 * 3 2 1 5 5 H 1.08006 * 120.00007 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00120 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00424 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00016 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47245 * 89.99838 * 8 6 4 10 10 H 1.48501 * 109.47445 * 210.00370 * 8 6 4 11 11 H 1.48505 * 109.46928 * 330.00373 * 8 6 4 12 12 C 1.46897 * 111.00400 * 123.95820 * 2 1 3 13 13 C 1.52997 * 109.46970 * 66.04571 * 12 2 1 14 14 H 1.08999 * 109.47442 * 304.99925 * 13 12 2 15 15 O 1.42904 * 109.47312 * 65.00107 * 13 12 2 16 16 C 1.53008 * 109.46869 * 185.00125 * 13 12 2 17 17 N 1.46901 * 109.46836 * 179.97438 * 16 13 12 18 18 C 1.46900 * 110.99826 * 179.97438 * 17 16 13 19 19 C 1.53000 * 109.47242 * 179.97438 * 18 17 16 20 20 C 1.53001 * 109.46870 * 174.14346 * 19 18 17 21 21 C 1.52997 * 109.47214 * 294.14414 * 19 18 17 22 22 N 1.46894 * 109.46847 * 54.14598 * 19 18 17 23 23 C 1.47013 * 111.00264 * 187.24526 * 22 19 18 24 24 C 1.53091 * 109.26400 * 177.60580 * 23 22 19 25 25 O 1.43015 * 109.25961 * 56.84892 * 24 23 22 26 26 C 1.43019 * 113.73451 * 301.33080 * 25 24 23 27 27 C 1.47017 * 111.00477 * 63.61017 * 22 19 18 28 28 H 1.08997 * 109.48113 * 59.99599 * 1 2 3 29 29 H 1.09010 * 109.46804 * 299.99257 * 1 2 3 30 30 H 1.09005 * 109.47117 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47047 * 53.95982 * 3 2 1 32 32 H 1.08999 * 109.47226 * 173.96055 * 3 2 1 33 33 H 0.96994 * 120.00627 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47213 * 186.04472 * 12 2 1 35 35 H 1.08992 * 109.47157 * 306.04319 * 12 2 1 36 36 H 0.96697 * 114.00096 * 60.00161 * 15 13 12 37 37 H 1.09002 * 109.46868 * 299.99596 * 16 13 12 38 38 H 1.08992 * 109.47470 * 60.00016 * 16 13 12 39 39 H 1.00890 * 111.00185 * 303.95499 * 17 16 13 40 40 H 1.09001 * 109.47758 * 300.00432 * 18 17 16 41 41 H 1.09008 * 109.46567 * 60.00385 * 18 17 16 42 42 H 1.08996 * 109.47626 * 60.00158 * 20 19 18 43 43 H 1.09003 * 109.46837 * 180.02562 * 20 19 18 44 44 H 1.08995 * 109.47238 * 299.99794 * 20 19 18 45 45 H 1.09002 * 109.46964 * 60.00083 * 21 19 18 46 46 H 1.08997 * 109.47108 * 179.97438 * 21 19 18 47 47 H 1.09005 * 109.46952 * 299.99848 * 21 19 18 48 48 H 1.09003 * 109.50574 * 297.54363 * 23 22 19 49 49 H 1.08998 * 109.50685 * 57.66821 * 23 22 19 50 50 H 1.09003 * 109.50501 * 296.91538 * 24 23 22 51 51 H 1.08999 * 109.54406 * 176.80638 * 24 23 22 52 52 H 1.08995 * 109.51141 * 298.73152 * 26 25 24 53 53 H 1.09006 * 109.54244 * 178.62296 * 26 25 24 54 54 H 1.08999 * 109.49963 * 302.32475 * 27 22 19 55 55 H 1.09000 * 109.50573 * 62.40893 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0737 1.5116 -2.0484 6 6 2.0266 3.3496 -1.5283 7 7 2.7118 4.0020 -0.6149 8 14 1.5815 4.1875 -3.1375 9 1 0.2690 4.8675 -2.9951 10 1 2.6235 5.1890 -3.4789 11 1 1.4981 3.1719 -4.2178 12 6 1.9955 -0.7660 1.1375 13 6 1.6315 -2.2426 0.9701 14 1 0.5533 -2.3390 0.8431 15 8 2.2956 -2.7695 -0.1803 16 6 2.0701 -3.0200 2.2129 17 7 1.7201 -4.4376 2.0524 18 6 2.1277 -5.2169 3.2291 19 6 1.7469 -6.6847 3.0257 20 6 2.2996 -7.5200 4.1823 21 6 0.2230 -6.8153 2.9848 22 7 2.3138 -7.1666 1.7591 23 6 1.8281 -8.5181 1.4448 24 6 2.3946 -8.9564 0.0918 25 8 3.8226 -8.8907 0.1346 26 6 4.3301 -7.5884 0.4375 27 6 3.7832 -7.1363 1.7941 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.5611 1.9273 0.8309 32 1 3.0796 1.3444 0.1081 33 1 2.9863 4.9181 -0.7768 34 1 3.0798 -0.6611 1.1755 35 1 1.5613 -0.3874 2.0627 36 1 3.2601 -2.7167 -0.1363 37 1 3.1484 -2.9237 2.3398 38 1 1.5636 -2.6182 3.0903 39 1 0.7342 -4.5481 1.8690 40 1 3.2065 -5.1362 3.3626 41 1 1.6221 -4.8300 4.1140 42 1 1.8790 -7.1625 5.1222 43 1 2.0286 -8.5658 4.0372 44 1 3.3851 -7.4270 4.2114 45 1 -0.1706 -6.2203 2.1608 46 1 -0.0482 -7.8610 2.8394 47 1 -0.1976 -6.4577 3.9247 48 1 2.1563 -9.2120 2.2188 49 1 0.7391 -8.5120 1.3987 50 1 2.0231 -8.2941 -0.6902 51 1 2.0835 -9.9795 -0.1196 52 1 4.0149 -6.8863 -0.3343 53 1 5.4190 -7.6214 0.4768 54 1 4.1213 -6.1213 2.0029 55 1 4.1427 -7.8073 2.5742 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564845643.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:00 Heat of formation + Delta-G solvation = -100.539611 kcal Electronic energy + Delta-G solvation = -29896.744144 eV Core-core repulsion = 25968.055484 eV Total energy + Delta-G solvation = -3928.688659 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 329.247 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.07485 -39.52109 -38.48595 -37.14716 -35.47353 -34.60902 -32.94410 -32.20351 -30.93400 -29.07973 -28.39818 -27.84255 -27.37150 -26.19791 -24.66844 -24.04380 -22.63017 -21.96079 -21.68665 -19.75086 -18.56018 -17.97162 -17.24492 -17.08197 -16.97186 -16.69003 -16.08188 -16.07202 -15.94048 -15.85769 -15.67340 -15.54173 -15.31578 -15.06356 -14.76884 -14.35177 -14.17023 -13.82345 -13.70534 -13.35064 -13.21987 -13.15230 -12.98621 -12.83936 -12.68424 -12.61101 -12.59020 -12.51576 -12.47878 -12.39501 -12.11626 -11.97037 -11.94519 -11.57437 -11.36768 -11.33161 -11.32497 -10.62102 -10.60351 -10.53813 -9.14047 -9.04464 -8.94235 -8.20848 -6.30685 1.40771 1.42344 1.54445 2.40360 2.78054 2.99746 3.06466 3.11715 3.50038 3.73259 3.82042 3.92963 3.97943 4.05754 4.16650 4.19106 4.22481 4.25131 4.36570 4.37771 4.41287 4.46849 4.54975 4.61001 4.64758 4.70907 4.72282 4.72929 4.74041 4.76727 4.80797 4.84438 4.90410 4.95263 4.99155 5.03918 5.06612 5.15011 5.16119 5.21057 5.22964 5.32327 5.38243 5.64977 6.04155 6.09092 6.15194 6.27855 6.29750 6.33075 6.56776 6.65428 6.85547 7.09555 7.39084 8.90170 Molecular weight = 329.25amu Principal moments of inertia in cm(-1) A = 0.019827 B = 0.002165 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.897903 B =12928.381171 C =13536.769617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.541 5.541 3 C 0.208 3.792 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.266 1.266 12 C 0.025 3.975 13 C 0.133 3.867 14 H 0.088 0.912 15 O -0.551 6.551 16 C 0.039 3.961 17 N -0.662 5.662 18 C 0.076 3.924 19 C 0.110 3.890 20 C -0.177 4.177 21 C -0.144 4.144 22 N -0.510 5.510 23 C 0.015 3.985 24 C 0.061 3.939 25 O -0.408 6.408 26 C 0.064 3.936 27 C 0.027 3.973 28 H 0.054 0.946 29 H 0.009 0.991 30 H 0.077 0.923 31 H -0.040 1.040 32 H 0.003 0.997 33 H 0.265 0.735 34 H 0.066 0.934 35 H 0.030 0.970 36 H 0.376 0.624 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.341 0.659 40 H 0.066 0.934 41 H 0.036 0.964 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.039 0.961 49 H 0.097 0.903 50 H 0.051 0.949 51 H 0.109 0.891 52 H 0.051 0.949 53 H 0.104 0.896 54 H 0.086 0.914 55 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.033 -27.626 10.955 29.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.264 5.264 3 C 0.082 3.918 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.793 3.207 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.191 1.191 12 C -0.104 4.104 13 C 0.072 3.928 14 H 0.106 0.894 15 O -0.356 6.356 16 C -0.091 4.091 17 N -0.293 5.293 18 C -0.054 4.054 19 C 0.021 3.979 20 C -0.236 4.236 21 C -0.201 4.201 22 N -0.235 5.235 23 C -0.113 4.113 24 C -0.016 4.016 25 O -0.327 6.327 26 C -0.013 4.013 27 C -0.101 4.101 28 H 0.073 0.927 29 H 0.028 0.972 30 H 0.096 0.904 31 H -0.022 1.022 32 H 0.021 0.979 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.223 0.777 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.160 0.840 40 H 0.085 0.915 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.057 0.943 49 H 0.115 0.885 50 H 0.070 0.930 51 H 0.127 0.873 52 H 0.069 0.931 53 H 0.122 0.878 54 H 0.104 0.896 55 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.882 -27.791 9.595 29.461 hybrid contribution -0.182 1.529 1.754 2.334 sum -2.064 -26.262 11.349 28.683 Atomic orbital electron populations 1.22221 0.87889 1.00832 0.99761 1.61928 1.07936 1.14835 1.41745 1.19390 0.93611 0.83958 0.94869 1.21471 1.34768 0.97474 1.02416 0.92143 1.25914 0.95011 0.98042 1.00732 1.70075 1.39397 1.11881 1.36219 0.85386 0.78010 0.78077 0.79178 1.19725 1.20597 1.19059 1.22841 1.00170 0.95606 0.91822 1.21694 0.97147 0.88416 0.85503 0.89408 1.86567 1.23718 1.83844 1.41422 1.22503 1.01479 0.89012 0.96122 1.60189 1.23852 1.06761 1.38531 1.21982 1.00417 0.91987 0.90981 1.21097 0.95499 0.93654 0.87694 1.22415 1.01474 1.00460 0.99238 1.21953 0.93154 1.02665 1.02347 1.62321 1.06664 1.22386 1.32125 1.22874 1.01617 0.89655 0.97117 1.22765 0.80103 1.02405 0.96292 1.87928 1.21911 1.31158 1.91681 1.22701 0.99134 0.83896 0.95591 1.22678 0.88590 1.01696 0.97118 0.92739 0.97218 0.90418 1.02195 0.97858 0.92668 0.91552 0.95200 0.77695 0.90661 0.94409 0.84003 0.91538 0.94577 0.91178 0.92143 0.92495 0.92055 0.91564 0.91467 0.94257 0.88487 0.93039 0.87259 0.93095 0.87764 0.89583 0.94304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.63 9.17 127.69 1.17 2.80 16 2 N -0.54 -23.80 4.70 -927.09 -4.36 -28.16 16 3 C 0.21 11.32 4.72 85.56 0.40 11.73 16 4 C -0.52 -30.40 8.52 25.60 0.22 -30.18 16 5 H 0.06 3.48 7.10 -2.91 -0.02 3.46 16 6 C 0.00 0.05 5.46 84.66 0.46 0.51 16 7 N -0.94 -56.92 13.29 21.45 0.28 -56.63 16 8 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 C 0.02 0.85 4.60 86.30 0.40 1.25 16 13 C 0.13 3.62 3.13 30.60 0.10 3.71 16 14 H 0.09 2.45 6.26 -2.39 -0.01 2.44 16 15 O -0.55 -17.00 13.15 -148.98 -1.96 -18.96 16 16 C 0.04 0.81 5.35 86.31 0.46 1.27 16 17 N -0.66 -12.39 6.07 -513.86 -3.12 -15.51 16 18 C 0.08 1.16 4.21 86.30 0.36 1.52 16 19 C 0.11 1.49 0.47 3.53 0.00 1.49 16 20 C -0.18 -2.06 7.75 71.98 0.56 -1.50 16 21 C -0.14 -1.70 7.79 71.98 0.56 -1.14 16 22 N -0.51 -8.21 4.25 -845.73 -3.59 -11.80 16 23 C 0.02 0.22 4.84 86.31 0.42 0.64 16 24 C 0.06 0.99 7.01 72.01 0.50 1.49 16 25 O -0.41 -8.39 10.83 -148.98 -1.61 -10.00 16 26 C 0.06 1.15 7.01 72.01 0.50 1.66 16 27 C 0.03 0.45 4.84 86.31 0.42 0.87 16 28 H 0.05 2.34 6.86 -2.39 -0.02 2.32 16 29 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.08 2.56 6.21 -2.38 -0.01 2.55 16 31 H -0.04 -2.33 8.12 -2.39 -0.02 -2.35 16 32 H 0.00 0.19 7.93 -2.39 -0.02 0.17 16 33 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 34 H 0.07 2.30 7.93 -2.39 -0.02 2.28 16 35 H 0.03 1.00 8.12 -2.39 -0.02 0.98 16 36 H 0.38 9.90 9.05 -74.06 -0.67 9.23 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.34 6.46 7.02 -89.70 -0.63 5.83 16 40 H 0.07 1.07 6.74 -2.39 -0.02 1.05 16 41 H 0.04 0.51 8.14 -2.38 -0.02 0.50 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 0.70 6.64 -2.39 -0.02 0.69 16 44 H 0.06 0.71 6.40 -2.39 -0.02 0.70 16 45 H 0.06 0.85 6.70 -2.39 -0.02 0.83 16 46 H 0.07 0.69 6.27 -2.39 -0.01 0.68 16 47 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 48 H 0.04 0.57 6.63 -2.39 -0.02 0.55 16 49 H 0.10 1.19 6.06 -2.39 -0.01 1.18 16 50 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 52 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 53 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 54 H 0.09 1.48 6.42 -2.39 -0.02 1.47 16 55 H 0.04 0.63 6.39 -2.39 -0.02 0.61 16 Total: -1.00 -68.15 410.59 -6.22 -74.38 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -0.43 Total: 23.51 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 6.54 Total: -3.88 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -10.79 Total: -112.11 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -3.57 Total: -28.97 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -68.15 -6.22 -74.38 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564845643.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.162 kcal (2) G-P(sol) polarization free energy of solvation -68.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds