Wall clock time and date at job start Tue Mar 31 2020 05:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46903 * 110.99613 * 2 1 4 4 C 1.50706 * 109.46743 * 293.95096 * 3 2 1 5 5 H 1.08005 * 119.99797 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00178 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99617 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00273 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47084 * 89.99993 * 8 6 4 10 10 H 1.48501 * 109.47322 * 209.99983 * 8 6 4 11 11 H 1.48504 * 109.46956 * 330.00072 * 8 6 4 12 12 C 1.46906 * 110.99984 * 123.94720 * 2 1 3 13 13 C 1.52990 * 109.46898 * 164.01619 * 12 2 1 14 14 H 1.08999 * 109.47823 * 58.50687 * 13 12 2 15 15 O 1.42909 * 109.47306 * 298.50805 * 13 12 2 16 16 C 1.52999 * 109.47041 * 178.51064 * 13 12 2 17 17 N 1.46907 * 109.47013 * 184.99869 * 16 13 12 18 18 C 1.46903 * 110.99750 * 179.97438 * 17 16 13 19 19 C 1.53004 * 109.46897 * 179.97438 * 18 17 16 20 20 N 1.46903 * 109.46897 * 180.02562 * 19 18 17 21 21 C 1.47011 * 110.99926 * 46.36161 * 20 19 18 22 22 C 1.53103 * 109.25754 * 182.39125 * 21 20 19 23 23 O 1.43020 * 109.25685 * 303.15632 * 22 21 20 24 24 C 1.43016 * 113.73950 * 58.66692 * 23 22 21 25 25 C 1.52998 * 109.50548 * 181.39492 * 24 23 22 26 26 C 1.53003 * 109.50315 * 61.26763 * 24 23 22 27 27 C 1.47012 * 110.99854 * 170.00048 * 20 19 18 28 28 H 1.09002 * 109.47561 * 301.53012 * 1 2 3 29 29 H 1.08997 * 109.47439 * 61.53953 * 1 2 3 30 30 H 1.09005 * 109.46565 * 181.53980 * 1 2 3 31 31 H 1.08994 * 109.47180 * 53.94487 * 3 2 1 32 32 H 1.08993 * 109.46946 * 173.95616 * 3 2 1 33 33 H 0.97005 * 119.99594 * 180.02562 * 7 6 4 34 34 H 1.08992 * 109.46914 * 44.01148 * 12 2 1 35 35 H 1.08998 * 109.46748 * 284.01663 * 12 2 1 36 36 H 0.96696 * 113.99268 * 300.00232 * 15 13 12 37 37 H 1.08993 * 109.47461 * 64.99775 * 16 13 12 38 38 H 1.08998 * 109.46993 * 304.99655 * 16 13 12 39 39 H 1.00899 * 110.99785 * 303.94860 * 17 16 13 40 40 H 1.09003 * 109.47332 * 299.99701 * 18 17 16 41 41 H 1.09003 * 109.47324 * 59.99874 * 18 17 16 42 42 H 1.08998 * 109.47007 * 299.99526 * 19 18 17 43 43 H 1.08994 * 109.46782 * 60.00263 * 19 18 17 44 44 H 1.08990 * 109.51374 * 302.32690 * 21 20 19 45 45 H 1.09001 * 109.50368 * 62.45907 * 21 20 19 46 46 H 1.08997 * 109.50547 * 183.22422 * 22 21 20 47 47 H 1.08992 * 109.53979 * 63.10919 * 22 21 20 48 48 H 1.08995 * 109.47077 * 179.78752 * 25 24 23 49 49 H 1.09006 * 109.47322 * 299.78297 * 25 24 23 50 50 H 1.08997 * 109.47497 * 59.78187 * 25 24 23 51 51 H 1.09004 * 109.47020 * 300.21091 * 26 24 23 52 52 H 1.08997 * 109.47709 * 60.21191 * 26 24 23 53 53 H 1.09000 * 109.46797 * 180.21823 * 26 24 23 54 54 H 1.08997 * 109.50777 * 297.53983 * 27 20 19 55 55 H 1.08997 * 109.50672 * 57.63069 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 -1.2985 5 1 1.0746 1.5110 -2.0489 6 6 2.0274 3.3491 -1.5291 7 7 2.7134 4.0012 -0.6160 8 14 1.5836 4.1862 -3.1389 9 1 0.2715 4.8670 -2.9975 10 1 2.6263 5.1870 -3.4804 11 1 1.5003 3.1701 -4.2187 12 6 1.9955 -0.7659 1.1377 13 6 3.4728 -1.0837 0.8986 14 1 4.0282 -0.1547 0.7698 15 8 3.6035 -1.8838 -0.2783 16 6 4.0307 -1.8492 2.1001 17 7 5.4755 -2.0497 1.9250 18 6 6.0469 -2.7827 3.0627 19 6 7.5494 -2.9724 2.8443 20 7 8.1207 -3.7058 3.9817 21 6 7.2931 -4.8709 4.3265 22 6 7.8904 -5.5700 5.5507 23 8 9.2458 -5.9318 5.2726 24 6 10.0803 -4.8209 4.9336 25 6 11.4930 -5.3193 4.6227 26 6 10.1299 -3.8420 6.1085 27 6 9.5052 -4.1143 3.7033 28 1 -0.3634 0.5374 0.8759 29 1 -0.3634 0.4897 -0.9034 30 1 -0.3633 -1.0274 0.0276 31 1 1.5609 1.9274 0.8308 32 1 3.0796 1.3445 0.1082 33 1 2.9879 4.9174 -0.7781 34 1 1.4357 -1.6954 1.2401 35 1 1.8933 -0.1780 2.0498 36 1 3.1335 -2.7277 -0.2343 37 1 3.5361 -2.8174 2.1757 38 1 3.8511 -1.2773 3.0105 39 1 5.6722 -2.5215 1.0550 40 1 5.8813 -2.2169 3.9795 41 1 5.5662 -3.7574 3.1454 42 1 7.7146 -3.5384 1.9276 43 1 8.0303 -1.9978 2.7614 44 1 6.2789 -4.5426 4.5537 45 1 7.2722 -5.5641 3.4856 46 1 7.3131 -6.4668 5.7753 47 1 7.8620 -4.8950 6.4060 48 1 12.1275 -4.4726 4.3607 49 1 11.9020 -5.8223 5.4990 50 1 11.4562 -6.0180 3.7870 51 1 9.1227 -3.4891 6.3302 52 1 10.5394 -4.3456 6.9841 53 1 10.7629 -2.9937 5.8480 54 1 9.5196 -4.7954 2.8525 55 1 10.1055 -3.2337 3.4748 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569568552.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:46 Heat of formation + Delta-G solvation = -109.342478 kcal Electronic energy + Delta-G solvation = -28870.801344 eV Core-core repulsion = 24941.730964 eV Total energy + Delta-G solvation = -3929.070380 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 329.247 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.13209 -39.62909 -38.02280 -37.09990 -35.58506 -34.60281 -34.57888 -31.74269 -30.34017 -29.49689 -29.01112 -28.21996 -26.86082 -25.59455 -24.86625 -24.15549 -22.82864 -21.95532 -21.54220 -20.31797 -18.62070 -17.68709 -17.48143 -17.27185 -17.24609 -16.64548 -16.46163 -16.31007 -16.02602 -15.74732 -15.61562 -15.54097 -15.26998 -14.96786 -14.61251 -14.35010 -14.05507 -13.95246 -13.64038 -13.45527 -13.23916 -13.12322 -13.02744 -12.92374 -12.85760 -12.80947 -12.59970 -12.54951 -12.51904 -12.30975 -12.28311 -12.15989 -12.05726 -11.95028 -11.49575 -11.31855 -11.24887 -10.78071 -10.60054 -10.55434 -9.42824 -9.36233 -8.95327 -8.19699 -6.29231 1.39720 1.42074 1.53671 2.40575 2.53009 2.79769 3.08943 3.13553 3.47717 3.69836 3.72424 3.86922 3.89300 3.96484 4.02284 4.09228 4.11990 4.19530 4.25219 4.33177 4.35816 4.43591 4.48658 4.57046 4.59455 4.61852 4.64589 4.69759 4.74959 4.77693 4.78444 4.81469 4.89157 4.92977 4.96828 4.99722 5.04707 5.07914 5.13354 5.25370 5.26072 5.32159 5.39664 5.65223 5.86667 5.90224 6.03528 6.08044 6.26146 6.35052 6.39746 6.65330 6.86671 7.04549 7.39969 8.91462 Molecular weight = 329.25amu Principal moments of inertia in cm(-1) A = 0.021285 B = 0.001803 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.178122 B =15522.655947 C =16261.192437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.542 5.542 3 C 0.209 3.791 4 C -0.523 4.523 5 H 0.061 0.939 6 C -0.002 4.002 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.266 1.266 12 C 0.027 3.973 13 C 0.123 3.877 14 H 0.063 0.937 15 O -0.559 6.559 16 C 0.048 3.952 17 N -0.699 5.699 18 C 0.067 3.933 19 C 0.064 3.936 20 N -0.535 5.535 21 C 0.012 3.988 22 C 0.059 3.941 23 O -0.395 6.395 24 C 0.109 3.891 25 C -0.137 4.137 26 C -0.163 4.163 27 C 0.032 3.968 28 H 0.008 0.992 29 H 0.054 0.946 30 H 0.083 0.917 31 H -0.042 1.042 32 H 0.005 0.995 33 H 0.264 0.736 34 H 0.098 0.902 35 H 0.027 0.973 36 H 0.379 0.621 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.347 0.653 40 H 0.074 0.926 41 H 0.043 0.957 42 H 0.032 0.968 43 H 0.077 0.923 44 H 0.099 0.901 45 H 0.035 0.965 46 H 0.112 0.888 47 H 0.064 0.936 48 H 0.087 0.913 49 H 0.068 0.932 50 H 0.058 0.942 51 H 0.062 0.938 52 H 0.060 0.940 53 H 0.071 0.929 54 H 0.035 0.965 55 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.958 -22.305 13.938 28.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.266 5.266 3 C 0.083 3.917 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.200 4.200 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.191 1.191 12 C -0.102 4.102 13 C 0.063 3.937 14 H 0.081 0.919 15 O -0.365 6.365 16 C -0.083 4.083 17 N -0.332 5.332 18 C -0.062 4.062 19 C -0.064 4.064 20 N -0.261 5.261 21 C -0.116 4.116 22 C -0.017 4.017 23 O -0.315 6.315 24 C 0.070 3.930 25 C -0.194 4.194 26 C -0.220 4.220 27 C -0.096 4.096 28 H 0.026 0.974 29 H 0.073 0.927 30 H 0.102 0.898 31 H -0.025 1.025 32 H 0.023 0.977 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.045 0.955 36 H 0.227 0.773 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.166 0.834 40 H 0.093 0.907 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.095 0.905 44 H 0.117 0.883 45 H 0.053 0.947 46 H 0.130 0.870 47 H 0.082 0.918 48 H 0.106 0.894 49 H 0.087 0.913 50 H 0.077 0.923 51 H 0.081 0.919 52 H 0.079 0.921 53 H 0.090 0.910 54 H 0.053 0.947 55 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.792 -21.123 14.013 28.394 hybrid contribution -1.206 -0.159 -0.643 1.376 sum 11.587 -21.281 13.370 27.675 Atomic orbital electron populations 1.22222 0.87471 1.01145 0.99868 1.61952 1.07869 1.15134 1.41639 1.19382 0.93801 0.83887 0.94628 1.21485 1.34695 0.97450 1.02490 0.92097 1.25944 0.95080 0.98168 1.00782 1.70093 1.39351 1.11824 1.36255 0.85375 0.77989 0.78048 0.79154 1.19611 1.20733 1.19061 1.22786 0.96714 0.98868 0.91876 1.21720 0.93742 0.93575 0.84625 0.91850 1.86658 1.75740 1.34492 1.39599 1.22441 0.87930 0.99615 0.98265 1.60178 1.12793 1.54597 1.05658 1.21988 0.93569 0.96385 0.94274 1.21986 0.94712 0.98680 0.91057 1.62252 1.02238 1.23554 1.38016 1.22934 0.98788 0.91576 0.98275 1.22786 0.82250 1.00600 0.96084 1.88002 1.20771 1.33210 1.89529 1.21701 0.91389 0.86480 0.93461 1.21764 0.92724 1.02377 1.02538 1.22224 1.03026 0.99211 0.97580 1.22799 0.89865 0.99933 0.96984 0.97379 0.92729 0.89811 1.02459 0.97743 0.92749 0.88357 0.95483 0.77314 0.92531 0.90389 0.83389 0.90732 0.93930 0.94935 0.90455 0.88300 0.94718 0.87046 0.91808 0.89443 0.91277 0.92272 0.91920 0.92096 0.90971 0.94717 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 9.32 127.69 1.19 2.75 16 2 N -0.54 -23.50 4.60 -927.05 -4.27 -27.76 16 3 C 0.21 11.51 4.57 85.56 0.39 11.90 16 4 C -0.52 -30.73 8.53 25.60 0.22 -30.51 16 5 H 0.06 3.52 7.10 -2.91 -0.02 3.50 16 6 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 7 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 8 Si 0.97 45.63 29.54 68.60 2.03 47.65 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 C 0.03 0.89 4.63 86.30 0.40 1.29 16 13 C 0.12 4.00 3.23 30.59 0.10 4.09 16 14 H 0.06 2.70 6.55 -2.39 -0.02 2.69 16 15 O -0.56 -17.85 12.75 -148.98 -1.90 -19.75 16 16 C 0.05 1.12 5.36 86.30 0.46 1.58 16 17 N -0.70 -16.53 6.50 -513.86 -3.34 -19.87 16 18 C 0.07 1.25 4.96 86.30 0.43 1.68 16 19 C 0.06 1.17 5.54 86.30 0.48 1.65 16 20 N -0.54 -9.06 4.24 -895.24 -3.80 -12.86 16 21 C 0.01 0.18 4.94 86.32 0.43 0.61 16 22 C 0.06 0.84 6.61 72.02 0.48 1.31 16 23 O -0.40 -7.09 10.28 -148.98 -1.53 -8.62 16 24 C 0.11 1.64 1.11 -10.76 -0.01 1.62 16 25 C -0.14 -1.60 8.85 71.98 0.64 -0.96 16 26 C -0.16 -2.25 8.17 71.98 0.59 -1.67 16 27 C 0.03 0.52 4.32 86.31 0.37 0.89 16 28 H 0.01 0.29 8.13 -2.39 -0.02 0.27 16 29 H 0.05 2.26 6.90 -2.39 -0.02 2.24 16 30 H 0.08 2.47 7.97 -2.38 -0.02 2.45 16 31 H -0.04 -2.51 8.11 -2.39 -0.02 -2.53 16 32 H 0.00 0.27 6.38 -2.39 -0.02 0.26 16 33 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 34 H 0.10 2.52 7.87 -2.39 -0.02 2.50 16 35 H 0.03 0.94 8.05 -2.39 -0.02 0.92 16 36 H 0.38 8.37 9.04 -74.06 -0.67 7.70 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.35 8.18 8.29 -89.69 -0.74 7.44 16 40 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.04 0.68 6.27 -2.39 -0.01 0.67 16 42 H 0.03 0.61 8.08 -2.39 -0.02 0.59 16 43 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.10 1.28 6.05 -2.39 -0.01 1.27 16 45 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.11 1.17 8.14 -2.39 -0.02 1.16 16 47 H 0.06 0.88 6.49 -2.39 -0.02 0.87 16 48 H 0.09 0.75 8.14 -2.39 -0.02 0.74 16 49 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 50 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.06 0.99 6.12 -2.39 -0.01 0.98 16 52 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 53 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 54 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 55 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -71.15 419.71 -6.47 -77.62 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -0.56 Total: 24.61 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 6.62 Total: -3.41 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -11.12 Total: -118.10 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -3.43 Total: -28.37 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -71.15 -6.47 -77.62 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569568552.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.722 kcal (2) G-P(sol) polarization free energy of solvation -71.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds