Wall clock time and date at job start Tue Mar 31 2020 05:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 H 1.09002 * 109.47075 * 299.99262 * 4 2 1 6 6 C 1.53006 * 109.46711 * 180.02562 * 4 2 1 7 7 N 1.46899 * 109.47394 * 59.99858 * 4 2 1 8 8 C 1.46892 * 110.99918 * 204.99642 * 7 4 2 9 9 C 1.53004 * 109.46956 * 179.97438 * 8 7 4 10 10 H 1.08998 * 109.47274 * 305.00528 * 9 8 7 11 11 O 1.42906 * 109.46609 * 65.00692 * 9 8 7 12 12 C 1.53002 * 109.47159 * 185.00132 * 9 8 7 13 13 N 1.46901 * 109.47106 * 180.02562 * 12 9 8 14 14 C 1.46906 * 110.99585 * 293.95374 * 13 12 9 15 15 C 1.46892 * 111.00099 * 170.00131 * 13 12 9 16 16 C 1.50696 * 109.47231 * 189.99841 * 15 13 12 17 17 H 1.08003 * 120.00455 * 359.97438 * 16 15 13 18 18 C 1.37884 * 120.00182 * 180.02562 * 16 15 13 19 19 N 1.31516 * 119.99888 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00198 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47008 * 89.99564 * 20 18 16 22 22 H 1.48495 * 109.46867 * 209.99807 * 20 18 16 23 23 H 1.48505 * 109.46872 * 329.99837 * 20 18 16 24 24 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 25 25 C 1.47021 * 110.99947 * 58.63472 * 24 2 1 26 26 C 1.53091 * 109.25880 * 177.60577 * 25 24 2 27 27 O 1.43017 * 109.26025 * 56.85030 * 26 25 24 28 28 C 1.43021 * 113.73675 * 301.32912 * 27 26 25 29 29 C 1.47016 * 111.00285 * 295.00166 * 24 2 1 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 32 32 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 33 33 H 1.09002 * 109.46589 * 299.99365 * 6 4 2 34 34 H 1.08996 * 109.47165 * 59.99875 * 6 4 2 35 35 H 1.09001 * 109.46726 * 179.97438 * 6 4 2 36 36 H 1.00900 * 110.99934 * 81.04379 * 7 4 2 37 37 H 1.08999 * 109.47660 * 299.99675 * 8 7 4 38 38 H 1.08998 * 109.47300 * 60.00305 * 8 7 4 39 39 H 0.96693 * 114.00135 * 59.99885 * 11 9 8 40 40 H 1.09005 * 109.47052 * 300.00553 * 12 9 8 41 41 H 1.08996 * 109.47029 * 60.00084 * 12 9 8 42 42 H 1.08997 * 109.47218 * 60.00115 * 14 13 12 43 43 H 1.08998 * 109.46430 * 180.02562 * 14 13 12 44 44 H 1.08997 * 109.47046 * 300.00168 * 14 13 12 45 45 H 1.09008 * 109.47391 * 309.99792 * 15 13 12 46 46 H 1.09001 * 109.47130 * 69.99585 * 15 13 12 47 47 H 0.96994 * 120.00270 * 179.97438 * 19 18 16 48 48 H 1.08995 * 109.50725 * 297.54299 * 25 24 2 49 49 H 1.09000 * 109.50215 * 57.67051 * 25 24 2 50 50 H 1.09000 * 109.50980 * 296.91756 * 26 25 24 51 51 H 1.08997 * 109.50854 * 176.78162 * 26 25 24 52 52 H 1.08997 * 109.50934 * 298.73758 * 28 27 26 53 53 H 1.08996 * 109.54405 * 178.62137 * 28 27 26 54 54 H 1.08997 * 109.50176 * 302.32568 * 29 24 2 55 55 H 1.08996 * 109.50420 * 62.45519 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6766 -1.7489 -1.2493 6 6 3.5700 -0.7218 -1.2490 7 7 1.5502 -0.0287 -2.4487 8 6 1.4875 -0.9438 -3.5961 9 6 0.9736 -0.1883 -4.8234 10 1 0.0179 0.2799 -4.5880 11 8 1.9187 0.8178 -5.1935 12 6 0.7898 -1.1672 -5.9848 13 7 0.2970 -0.4417 -7.1633 14 6 -1.0553 0.0830 -6.9310 15 6 0.3328 -1.2940 -8.3592 16 6 0.0584 -0.4564 -9.5815 17 1 -0.1246 0.6032 -9.4801 18 6 0.0401 -1.0428 -10.8292 19 7 0.2625 -2.3331 -10.9527 20 14 -0.3007 -0.0046 -12.3443 21 1 0.9797 0.5200 -12.8831 22 1 -0.9673 -0.8388 -13.3763 23 1 -1.1856 1.1304 -11.9778 24 7 2.0197 -0.6925 1.1994 25 6 1.5218 -2.0749 1.2498 26 6 2.1027 -2.7762 2.4804 27 8 1.7582 -2.0336 3.6532 28 6 2.2281 -0.6829 3.6379 29 6 1.6484 0.0397 2.4190 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3635 0.5138 -0.8899 33 1 3.9336 0.3058 -1.2488 34 1 3.9329 -1.2359 -0.3590 35 1 3.9332 -1.2360 -2.1388 36 1 2.1203 0.7767 -2.6593 37 1 2.4828 -1.3374 -3.8019 38 1 0.8111 -1.7674 -3.3675 39 1 2.7938 0.4723 -5.4167 40 1 1.7456 -1.6354 -6.2202 41 1 0.0691 -1.9346 -5.7026 42 1 -1.0391 0.7660 -6.0817 43 1 -1.3960 0.6151 -7.8192 44 1 -1.7343 -0.7432 -6.7200 45 1 1.3167 -1.7547 -8.4478 46 1 -0.4262 -2.0718 -8.2738 47 1 0.2492 -2.7458 -11.8304 48 1 0.4338 -2.0677 1.3147 49 1 1.8298 -2.6057 0.3490 50 1 3.1875 -2.8310 2.3900 51 1 1.6916 -3.7831 2.5535 52 1 3.3166 -0.6768 3.5810 53 1 1.9083 -0.1754 4.5480 54 1 2.0489 1.0523 2.3717 55 1 0.5624 0.0806 2.5026 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577364970.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:06 Heat of formation + Delta-G solvation = -107.570216 kcal Electronic energy + Delta-G solvation = -29407.606361 eV Core-core repulsion = 25478.612831 eV Total energy + Delta-G solvation = -3928.993529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 329.247 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.97976 -39.67183 -38.49125 -37.17655 -35.87520 -34.61904 -32.53127 -32.08467 -30.93821 -30.00863 -28.87054 -27.52257 -27.08066 -25.29895 -25.08271 -24.00405 -22.63375 -22.05048 -21.64166 -20.31670 -18.58233 -17.84935 -17.33183 -17.16519 -17.01845 -16.73735 -16.34014 -16.07802 -16.01699 -15.84428 -15.62833 -15.57866 -15.21058 -14.98066 -14.73984 -14.45459 -14.23083 -13.88506 -13.71131 -13.47911 -13.25661 -13.17601 -13.00292 -12.90318 -12.71124 -12.65931 -12.54836 -12.49533 -12.46523 -12.36758 -12.15443 -12.02037 -11.94099 -11.61053 -11.51478 -11.42021 -11.30593 -10.73910 -10.62348 -10.58078 -9.42013 -9.17881 -8.96749 -8.21408 -6.31214 1.40768 1.42264 1.53498 2.39635 2.60406 2.95587 3.10042 3.12894 3.50196 3.69951 3.73110 3.93809 4.00525 4.01617 4.13553 4.18989 4.19374 4.25247 4.27695 4.32370 4.36679 4.45750 4.49244 4.55868 4.61581 4.62396 4.69731 4.72610 4.74128 4.80711 4.81994 4.87044 4.91588 4.94007 5.02822 5.06544 5.10297 5.11815 5.16684 5.20562 5.31703 5.34194 5.38332 5.64263 5.95999 6.02369 6.04366 6.13311 6.20294 6.31781 6.50232 6.63342 6.84910 6.97207 7.38450 8.89506 Molecular weight = 329.25amu Principal moments of inertia in cm(-1) A = 0.034023 B = 0.001808 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.765385 B =15479.708075 C =15603.292969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.099 3.901 3 H 0.082 0.918 4 C 0.096 3.904 5 H 0.072 0.928 6 C -0.165 4.165 7 N -0.680 5.680 8 C 0.044 3.956 9 C 0.130 3.870 10 H 0.094 0.906 11 O -0.559 6.559 12 C 0.024 3.976 13 N -0.538 5.538 14 C 0.041 3.959 15 C 0.207 3.793 16 C -0.523 4.523 17 H 0.061 0.939 18 C 0.000 4.000 19 N -0.934 5.934 20 Si 0.970 3.030 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.265 1.265 24 N -0.528 5.528 25 C 0.013 3.987 26 C 0.063 3.937 27 O -0.408 6.408 28 C 0.063 3.937 29 C 0.017 3.983 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.349 0.651 37 H 0.041 0.959 38 H 0.077 0.923 39 H 0.379 0.621 40 H 0.067 0.933 41 H 0.030 0.970 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.010 0.990 45 H 0.004 0.996 46 H -0.040 1.040 47 H 0.264 0.736 48 H 0.038 0.962 49 H 0.090 0.910 50 H 0.061 0.939 51 H 0.107 0.893 52 H 0.061 0.939 53 H 0.110 0.890 54 H 0.095 0.905 55 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.457 2.480 29.896 30.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.010 4.010 3 H 0.101 0.899 4 C -0.014 4.014 5 H 0.090 0.910 6 C -0.224 4.224 7 N -0.311 5.311 8 C -0.086 4.086 9 C 0.070 3.930 10 H 0.112 0.888 11 O -0.365 6.365 12 C -0.105 4.105 13 N -0.262 5.262 14 C -0.107 4.107 15 C 0.081 3.919 16 C -0.562 4.562 17 H 0.079 0.921 18 C -0.198 4.198 19 N -0.575 5.575 20 Si 0.795 3.205 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.190 1.190 24 N -0.253 5.253 25 C -0.115 4.115 26 C -0.014 4.014 27 O -0.327 6.327 28 C -0.014 4.014 29 C -0.111 4.111 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.168 0.832 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.226 0.774 40 H 0.086 0.914 41 H 0.049 0.951 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.028 0.972 45 H 0.022 0.978 46 H -0.022 1.022 47 H 0.073 0.927 48 H 0.057 0.943 49 H 0.108 0.892 50 H 0.080 0.920 51 H 0.125 0.875 52 H 0.080 0.920 53 H 0.128 0.872 54 H 0.113 0.887 55 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.020 2.959 30.096 30.655 hybrid contribution -0.185 -1.051 -1.538 1.872 sum 4.834 1.908 28.558 29.027 Atomic orbital electron populations 1.22233 0.97100 1.01451 1.02048 1.21527 0.92964 0.97870 0.88599 0.89947 1.21482 0.93499 0.97206 0.89247 0.91029 1.22278 0.95969 1.02162 1.01951 1.60341 1.58040 1.09722 1.03034 1.22454 1.00216 0.95439 0.90525 1.21757 0.93222 0.88132 0.89865 0.88838 1.86561 1.24735 1.35298 1.89860 1.22830 1.00053 0.95671 0.91973 1.61938 1.23803 1.37563 1.02901 1.22209 0.88571 0.98513 1.01389 1.19395 0.93878 0.90602 0.88019 1.21472 1.47593 0.95352 0.91738 0.92088 1.25925 0.95108 0.96241 1.02498 1.70078 1.50966 1.11691 1.24764 0.85371 0.78564 0.78438 0.78170 1.19810 1.20691 1.18979 1.62445 1.58798 1.02043 1.02007 1.22851 0.98208 0.90469 1.00011 1.22758 0.99997 0.95293 0.83338 1.87961 1.79003 1.24730 1.40966 1.22779 0.98859 0.81716 0.98042 1.22817 0.99110 0.98986 0.90233 0.93472 0.93183 0.91350 0.92551 0.91048 0.93579 0.83168 0.94060 0.90411 0.77359 0.91440 0.95138 0.90583 0.92744 0.97196 0.97757 1.02243 0.92683 0.94333 0.89152 0.92029 0.87520 0.92036 0.87154 0.88651 0.94287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 8.33 71.98 0.60 -2.17 16 2 C 0.10 1.46 2.12 44.92 0.10 1.55 16 3 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 4 C 0.10 1.46 1.84 44.92 0.08 1.54 16 5 H 0.07 1.17 6.04 -2.39 -0.01 1.15 16 6 C -0.16 -2.37 9.01 71.98 0.65 -1.72 16 7 N -0.68 -12.16 5.48 -491.57 -2.70 -14.86 16 8 C 0.04 0.88 5.16 86.31 0.44 1.33 16 9 C 0.13 3.45 3.08 30.60 0.09 3.54 16 10 H 0.09 2.67 6.55 -2.39 -0.02 2.66 16 11 O -0.56 -15.67 12.72 -148.98 -1.90 -17.57 16 12 C 0.02 0.81 4.62 86.30 0.40 1.21 16 13 N -0.54 -23.42 4.62 -927.05 -4.28 -27.71 16 14 C 0.04 1.65 9.14 127.69 1.17 2.82 16 15 C 0.21 11.19 4.72 85.56 0.40 11.59 16 16 C -0.52 -30.18 8.46 25.60 0.22 -29.97 16 17 H 0.06 3.49 7.12 -2.91 -0.02 3.46 16 18 C 0.00 0.01 5.46 84.66 0.46 0.47 16 19 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 20 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 N -0.53 -7.21 3.95 -869.99 -3.44 -10.65 16 25 C 0.01 0.17 4.86 86.31 0.42 0.59 16 26 C 0.06 0.82 7.01 72.01 0.50 1.32 16 27 O -0.41 -6.74 10.83 -148.98 -1.61 -8.35 16 28 C 0.06 0.75 7.01 72.01 0.50 1.25 16 29 C 0.02 0.21 5.31 86.31 0.46 0.66 16 30 H 0.05 0.81 6.43 -2.39 -0.02 0.80 16 31 H 0.05 0.78 6.58 -2.39 -0.02 0.77 16 32 H 0.07 1.29 7.60 -2.39 -0.02 1.27 16 33 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 34 H 0.07 1.03 7.60 -2.39 -0.02 1.02 16 35 H 0.05 0.70 7.46 -2.39 -0.02 0.68 16 36 H 0.35 6.42 8.03 -89.69 -0.72 5.70 16 37 H 0.04 0.78 7.44 -2.39 -0.02 0.76 16 38 H 0.08 1.57 8.06 -2.39 -0.02 1.55 16 39 H 0.38 8.63 9.04 -74.06 -0.67 7.96 16 40 H 0.07 2.27 7.93 -2.38 -0.02 2.25 16 41 H 0.03 1.02 8.12 -2.39 -0.02 1.01 16 42 H 0.08 2.58 6.47 -2.39 -0.02 2.57 16 43 H 0.05 2.36 6.76 -2.39 -0.02 2.34 16 44 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.00 0.25 7.93 -2.38 -0.02 0.23 16 46 H -0.04 -2.35 8.12 -2.39 -0.02 -2.37 16 47 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 48 H 0.04 0.61 6.42 -2.39 -0.02 0.59 16 49 H 0.09 1.16 6.22 -2.39 -0.01 1.14 16 50 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 52 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 53 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 54 H 0.10 0.98 8.13 -2.39 -0.02 0.96 16 55 H 0.04 0.55 6.56 -2.39 -0.02 0.54 16 Total: -1.00 -66.35 413.75 -5.63 -71.98 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -0.52 Total: 22.58 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 6.50 Total: -5.97 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -10.13 Total: -109.49 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -3.51 Total: -25.92 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -66.35 -5.63 -71.98 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577364970.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.587 kcal (2) G-P(sol) polarization free energy of solvation -66.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds