Wall clock time and date at job start Tue Mar 31 2020 05:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47149 * 2 1 4 4 N 1.46903 * 109.47319 * 240.00309 * 2 1 3 5 5 C 1.46903 * 111.00177 * 84.99846 * 4 2 1 6 6 C 1.52992 * 109.47578 * 180.02562 * 5 4 2 7 7 H 1.08998 * 109.46862 * 305.00661 * 6 5 4 8 8 O 1.42905 * 109.46980 * 64.99788 * 6 5 4 9 9 C 1.52997 * 109.47482 * 185.00096 * 6 5 4 10 10 N 1.46899 * 109.47254 * 179.97438 * 9 6 5 11 11 C 1.46902 * 111.00255 * 293.95367 * 10 9 6 12 12 C 1.46901 * 111.00103 * 169.99667 * 10 9 6 13 13 C 1.50696 * 109.47399 * 190.00043 * 12 10 9 14 14 H 1.08005 * 119.99725 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00189 * 180.02562 * 13 12 10 16 16 N 1.31512 * 119.99750 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 119.99818 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46963 * 90.00024 * 17 15 13 19 19 H 1.48502 * 109.47084 * 209.99996 * 17 15 13 20 20 H 1.48500 * 109.47321 * 330.00380 * 17 15 13 21 21 C 1.52997 * 109.47550 * 120.00404 * 2 1 3 22 22 H 1.08996 * 109.47554 * 185.00193 * 21 2 1 23 23 C 1.53002 * 109.47184 * 64.99475 * 21 2 1 24 24 N 1.46901 * 109.46723 * 305.00184 * 21 2 1 25 25 C 1.47009 * 111.00158 * 303.62894 * 24 21 2 26 26 C 1.53101 * 109.25997 * 177.60853 * 25 24 21 27 27 O 1.43014 * 109.25770 * 56.85269 * 26 25 24 28 28 C 1.43019 * 113.73725 * 301.33100 * 27 26 25 29 29 C 1.47019 * 110.99735 * 179.97438 * 24 21 2 30 30 H 1.09000 * 109.47029 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46707 * 299.99842 * 1 2 3 32 32 H 1.09006 * 109.46758 * 59.99603 * 1 2 3 33 33 H 1.00895 * 111.00123 * 208.95436 * 4 2 1 34 34 H 1.09001 * 109.46871 * 59.99686 * 5 4 2 35 35 H 1.09004 * 109.46883 * 300.00718 * 5 4 2 36 36 H 0.96696 * 114.00036 * 60.00352 * 8 6 5 37 37 H 1.09002 * 109.47153 * 59.99783 * 9 6 5 38 38 H 1.09001 * 109.46832 * 299.99974 * 9 6 5 39 39 H 1.09005 * 109.46528 * 59.99744 * 11 10 9 40 40 H 1.09000 * 109.46785 * 179.97438 * 11 10 9 41 41 H 1.08997 * 109.47044 * 300.00388 * 11 10 9 42 42 H 1.08998 * 109.47407 * 310.00536 * 12 10 9 43 43 H 1.09007 * 109.46608 * 69.99971 * 12 10 9 44 44 H 0.97008 * 119.99731 * 179.97438 * 16 15 13 45 45 H 1.08996 * 109.47462 * 300.00775 * 23 21 2 46 46 H 1.09002 * 109.46964 * 60.00166 * 23 21 2 47 47 H 1.08999 * 109.47577 * 180.02562 * 23 21 2 48 48 H 1.09007 * 109.50795 * 297.54527 * 25 24 21 49 49 H 1.09007 * 109.50676 * 57.67327 * 25 24 21 50 50 H 1.08997 * 109.50333 * 296.91405 * 26 25 24 51 51 H 1.08998 * 109.53994 * 176.80835 * 26 25 24 52 52 H 1.09001 * 109.50491 * 298.73649 * 28 27 26 53 53 H 1.08994 * 109.54386 * 178.62813 * 28 27 26 54 54 H 1.08996 * 109.50648 * 302.32110 * 29 24 21 55 55 H 1.08996 * 109.50967 * 62.41608 * 29 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3469 6 6 2.5951 -0.5329 -3.5745 7 1 3.5507 -1.0018 -3.3397 8 8 1.6493 -1.5384 -3.9442 9 6 2.7790 0.4459 -4.7359 10 7 3.2718 -0.2795 -5.9144 11 6 4.6241 -0.8043 -5.6823 12 6 3.2360 0.5729 -7.1103 13 6 3.5103 -0.2648 -8.3327 14 1 3.6926 -1.3245 -8.2313 15 6 3.5286 0.3217 -9.5804 16 7 3.7675 -0.4095 -10.6471 17 14 3.2126 2.1543 -9.7557 18 1 4.4997 2.8894 -9.6648 19 1 2.5804 2.4239 -11.0721 20 1 2.3066 2.6066 -8.6695 21 6 2.0401 -0.7213 1.2491 22 1 3.1264 -0.6444 1.2951 23 6 1.6353 -2.1955 1.1879 24 7 1.4543 -0.1021 2.4455 25 6 1.7508 1.3370 2.4928 26 6 1.0735 1.9522 3.7203 27 8 1.5173 1.2691 4.8958 28 6 1.2440 -0.1346 4.8837 29 6 1.9226 -0.7712 3.6680 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.9173 -1.1204 -1.0288 34 1 2.7589 1.0463 -2.1182 35 1 1.0871 0.6165 -2.5525 36 1 0.7743 -1.1924 -4.1670 37 1 3.5004 1.2129 -4.4540 38 1 1.8234 0.9148 -4.9707 39 1 4.6078 -1.4873 -4.8329 40 1 4.9644 -1.3371 -6.5702 41 1 5.3031 0.0218 -5.4712 42 1 2.2521 1.0336 -7.1989 43 1 3.9950 1.3506 -7.0250 44 1 3.7800 0.0030 -11.5250 45 1 0.5490 -2.2725 1.1419 46 1 2.0699 -2.6550 0.3001 47 1 1.9983 -2.7094 2.0780 48 1 2.8288 1.4846 2.5597 49 1 1.3726 1.8164 1.5898 50 1 -0.0079 1.8521 3.6275 51 1 1.3366 3.0075 3.7913 52 1 0.1675 -0.2953 4.8249 53 1 1.6305 -0.5892 5.7959 54 1 1.6696 -1.8305 3.6228 55 1 3.0034 -0.6584 3.7535 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577364971.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:11 Heat of formation + Delta-G solvation = -99.991206 kcal Electronic energy + Delta-G solvation = -29429.060997 eV Core-core repulsion = 25500.396118 eV Total energy + Delta-G solvation = -3928.664879 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 329.247 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.96861 -39.65084 -38.59120 -37.14552 -35.78208 -34.59438 -32.73992 -32.38458 -30.93910 -29.97043 -29.18730 -27.60935 -27.27801 -25.59443 -24.77100 -23.69712 -22.50746 -21.85226 -21.61306 -20.21590 -19.02846 -17.92274 -17.54695 -17.07544 -17.04201 -16.78321 -16.41493 -16.31953 -15.98445 -15.91613 -15.74302 -15.59641 -15.27544 -15.08089 -14.87814 -14.49660 -14.16879 -13.96339 -13.53561 -13.52074 -13.37218 -13.16807 -13.00152 -12.79789 -12.70621 -12.62210 -12.58874 -12.48301 -12.41594 -12.31042 -12.25204 -11.88287 -11.81521 -11.58643 -11.49417 -11.41856 -11.32478 -10.79899 -10.69870 -10.58531 -9.41447 -9.31699 -8.97312 -8.28341 -6.31981 1.33305 1.35657 1.46460 2.33814 2.56111 2.92330 3.01295 3.05394 3.40691 3.66185 3.77555 3.86879 3.91629 3.97879 4.01835 4.17448 4.19250 4.22168 4.28473 4.31170 4.33228 4.42148 4.49639 4.55830 4.62031 4.62992 4.64212 4.68722 4.73145 4.75860 4.79244 4.80654 4.88948 4.93535 4.99047 5.00335 5.05882 5.07225 5.13340 5.15189 5.24816 5.42345 5.53006 5.56314 5.93150 5.95991 5.97969 6.10036 6.17859 6.35467 6.41743 6.66417 6.74713 7.07353 7.31399 8.88486 Molecular weight = 329.25amu Principal moments of inertia in cm(-1) A = 0.028192 B = 0.001907 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.942402 B =14678.037507 C =15134.224928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.095 3.905 3 H 0.040 0.960 4 N -0.674 5.674 5 C 0.041 3.959 6 C 0.128 3.872 7 H 0.087 0.913 8 O -0.554 6.554 9 C 0.021 3.979 10 N -0.539 5.539 11 C 0.041 3.959 12 C 0.172 3.828 13 C -0.517 4.517 14 H 0.035 0.965 15 C 0.004 3.996 16 N -0.949 5.949 17 Si 0.951 3.049 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.247 1.247 21 C 0.086 3.914 22 H 0.033 0.967 23 C -0.135 4.135 24 N -0.527 5.527 25 C 0.014 3.986 26 C 0.063 3.937 27 O -0.408 6.408 28 C 0.063 3.937 29 C 0.016 3.984 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.340 0.660 34 H 0.043 0.957 35 H 0.081 0.919 36 H 0.378 0.622 37 H 0.040 0.960 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.044 0.956 41 H 0.020 0.980 42 H 0.031 0.969 43 H -0.015 1.015 44 H 0.267 0.733 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.058 0.942 48 H 0.031 0.969 49 H 0.094 0.906 50 H 0.063 0.937 51 H 0.109 0.891 52 H 0.063 0.937 53 H 0.111 0.889 54 H 0.101 0.899 55 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.130 4.626 33.915 34.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.015 4.015 3 H 0.058 0.942 4 N -0.307 5.307 5 C -0.089 4.089 6 C 0.068 3.932 7 H 0.105 0.895 8 O -0.359 6.359 9 C -0.108 4.108 10 N -0.263 5.263 11 C -0.107 4.107 12 C 0.045 3.955 13 C -0.555 4.555 14 H 0.053 0.947 15 C -0.193 4.193 16 N -0.589 5.589 17 Si 0.774 3.226 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.171 1.171 21 C -0.022 4.022 22 H 0.051 0.949 23 C -0.192 4.192 24 N -0.253 5.253 25 C -0.114 4.114 26 C -0.013 4.013 27 O -0.327 6.327 28 C -0.014 4.014 29 C -0.112 4.112 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.159 0.841 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.225 0.775 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.063 0.937 41 H 0.039 0.961 42 H 0.049 0.951 43 H 0.003 0.997 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.050 0.950 49 H 0.113 0.887 50 H 0.081 0.919 51 H 0.127 0.873 52 H 0.081 0.919 53 H 0.129 0.871 54 H 0.119 0.881 55 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.957 3.627 33.727 34.627 hybrid contribution 1.847 2.016 -0.838 2.860 sum -5.110 5.643 32.889 33.758 Atomic orbital electron populations 1.21638 0.93569 1.02056 1.00807 1.21511 0.97001 0.94866 0.88115 0.94199 1.60443 1.33552 1.32900 1.03763 1.22559 1.01600 0.93819 0.90906 1.21728 0.92887 0.88286 0.90292 0.89496 1.86574 1.24530 1.35023 1.89814 1.22900 1.00653 0.95657 0.91566 1.61725 1.24084 1.37615 1.02848 1.22194 0.88599 0.98787 1.01100 1.19958 0.95425 0.91465 0.88681 1.21281 1.47463 0.95655 0.91134 0.94705 1.25905 0.94614 1.03514 0.95246 1.70063 1.51483 1.38280 0.99118 0.85665 0.79360 0.79289 0.78277 1.19355 1.20660 1.17083 1.21693 0.95419 0.95805 0.89300 0.94946 1.21778 1.02482 0.93195 1.01758 1.62260 1.58786 1.02457 1.01801 1.22865 0.98726 0.89323 1.00488 1.22754 0.98682 0.96779 0.83107 1.87962 1.82428 1.21466 1.40822 1.22783 1.00133 0.80481 0.98002 1.22869 0.97667 1.00500 0.90149 0.92633 0.91451 0.93914 0.84086 0.93932 0.90108 0.77451 0.94210 0.90484 0.90710 0.93700 0.96144 0.95134 0.99745 0.92443 0.91897 0.91623 0.92350 0.95040 0.88742 0.91856 0.87342 0.91919 0.87081 0.88124 0.94870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.90 8.83 71.98 0.64 -1.27 16 2 C 0.09 1.41 1.91 44.91 0.09 1.49 16 3 H 0.04 0.60 6.25 -2.39 -0.01 0.59 16 4 N -0.67 -11.67 5.46 -491.56 -2.68 -14.35 16 5 C 0.04 0.76 5.12 86.30 0.44 1.21 16 6 C 0.13 3.19 3.02 30.59 0.09 3.28 16 7 H 0.09 2.24 6.55 -2.39 -0.02 2.22 16 8 O -0.55 -16.24 13.15 -148.98 -1.96 -18.20 16 9 C 0.02 0.64 4.62 86.30 0.40 1.04 16 10 N -0.54 -22.14 4.62 -927.04 -4.28 -26.43 16 11 C 0.04 1.60 9.14 127.69 1.17 2.77 16 12 C 0.17 8.24 3.79 85.56 0.32 8.57 16 13 C -0.52 -30.41 9.01 25.60 0.23 -30.18 16 14 H 0.03 2.31 7.37 -2.91 -0.02 2.29 16 15 C 0.00 0.25 5.47 84.66 0.46 0.71 16 16 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 17 Si 0.95 44.05 27.47 68.60 1.88 45.94 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 20 H -0.25 -10.53 6.54 99.48 0.65 -9.88 16 21 C 0.09 1.19 1.79 44.91 0.08 1.27 16 22 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 23 C -0.13 -1.86 8.49 71.98 0.61 -1.25 16 24 N -0.53 -6.86 3.69 -869.97 -3.21 -10.08 16 25 C 0.01 0.18 4.96 86.32 0.43 0.61 16 26 C 0.06 0.76 7.01 72.02 0.50 1.26 16 27 O -0.41 -6.39 10.83 -148.98 -1.61 -8.01 16 28 C 0.06 0.71 7.01 72.01 0.50 1.21 16 29 C 0.02 0.19 5.34 86.31 0.46 0.65 16 30 H 0.05 0.97 6.57 -2.39 -0.02 0.96 16 31 H 0.07 0.98 6.93 -2.39 -0.02 0.96 16 32 H 0.04 0.69 7.45 -2.38 -0.02 0.67 16 33 H 0.34 5.77 7.91 -89.70 -0.71 5.06 16 34 H 0.04 0.73 8.06 -2.39 -0.02 0.71 16 35 H 0.08 1.46 7.44 -2.39 -0.02 1.44 16 36 H 0.38 9.22 9.05 -74.06 -0.67 8.55 16 37 H 0.04 1.11 8.12 -2.39 -0.02 1.09 16 38 H 0.08 2.21 7.93 -2.39 -0.02 2.19 16 39 H 0.07 2.48 6.47 -2.38 -0.02 2.46 16 40 H 0.04 2.03 6.76 -2.39 -0.02 2.01 16 41 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.03 1.44 6.99 -2.39 -0.02 1.42 16 43 H -0.02 -0.71 7.55 -2.38 -0.02 -0.73 16 44 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 45 H 0.06 0.97 6.57 -2.39 -0.02 0.95 16 46 H 0.06 1.03 7.17 -2.39 -0.02 1.01 16 47 H 0.06 0.69 6.35 -2.39 -0.02 0.67 16 48 H 0.03 0.45 8.14 -2.38 -0.02 0.43 16 49 H 0.09 1.09 5.84 -2.38 -0.01 1.07 16 50 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 53 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 54 H 0.10 0.98 6.18 -2.39 -0.01 0.97 16 55 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -70.24 408.39 -5.70 -75.94 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -0.56 Total: 23.55 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 6.43 Total: -8.64 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -9.88 Total: -110.59 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -3.57 Total: -26.20 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.94 kcal Total: -70.24 -5.70 -75.94 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577364971.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.054 kcal (2) G-P(sol) polarization free energy of solvation -70.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds