Wall clock time and date at job start Tue Mar 31 2020 05:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 119.99886 * 2 1 4 4 H 1.48502 * 109.47147 * 274.97815 * 3 2 1 5 5 H 1.48501 * 109.47440 * 34.97879 * 3 2 1 6 6 H 1.48499 * 109.47126 * 154.98075 * 3 2 1 7 7 C 1.39933 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00454 * 163.01870 * 7 2 1 9 9 C 1.41444 * 120.00002 * 343.01945 * 7 2 1 10 10 C 1.40783 * 120.17476 * 334.75118 * 9 7 2 11 11 C 1.37713 * 120.03972 * 179.97438 * 10 9 7 12 12 C 1.38369 * 120.40997 * 0.02562 * 11 10 9 13 13 C 1.39878 * 120.36070 * 359.97438 * 12 11 10 14 14 C 1.47887 * 120.02779 * 180.02562 * 13 12 11 15 15 O 1.21548 * 120.00275 * 136.13355 * 14 13 12 16 16 N 1.34779 * 119.99867 * 316.13602 * 14 13 12 17 17 C 1.47082 * 120.87631 * 182.84499 * 16 14 13 18 18 C 1.53695 * 108.27404 * 128.75818 * 17 16 14 19 19 N 1.46900 * 109.25858 * 54.08165 * 18 17 16 20 20 C 1.46900 * 111.00155 * 172.60944 * 19 18 17 21 21 H 1.08995 * 110.63161 * 69.92400 * 20 19 18 22 22 C 1.55146 * 110.70505 * 193.22020 * 20 19 18 23 23 C 1.54906 * 101.65180 * 154.03210 * 22 20 19 24 24 N 1.47839 * 104.79834 * 322.93042 * 23 22 20 25 25 C 1.47447 * 108.56762 * 24.09445 * 24 23 22 26 26 C 1.46903 * 111.26604 * 296.75823 * 19 18 17 27 27 C 1.47079 * 120.88386 * 3.12706 * 16 14 13 28 28 C 1.39029 * 119.95098 * 0.02562 * 13 12 11 29 29 H 0.96993 * 119.99835 * 0.02562 * 1 2 3 30 30 H 1.07994 * 119.98389 * 359.95946 * 10 9 7 31 31 H 1.07995 * 119.79741 * 179.97438 * 11 10 9 32 32 H 1.08005 * 119.82366 * 179.97438 * 12 11 10 33 33 H 1.09004 * 109.63066 * 248.52088 * 17 16 14 34 34 H 1.08992 * 109.63128 * 9.10719 * 17 16 14 35 35 H 1.08998 * 109.65244 * 294.07765 * 18 17 16 36 36 H 1.09004 * 109.41820 * 173.94400 * 18 17 16 37 37 H 1.09002 * 110.98878 * 272.12568 * 22 20 19 38 38 H 1.08997 * 110.98983 * 35.94461 * 22 20 19 39 39 H 1.09001 * 110.37474 * 204.09656 * 23 22 20 40 40 H 1.09003 * 110.46559 * 81.80616 * 23 22 20 41 41 H 1.00901 * 111.00167 * 146.36019 * 24 23 22 42 42 H 1.09002 * 109.88659 * 239.60317 * 25 24 23 43 43 H 1.09000 * 109.88566 * 118.41778 * 25 24 23 44 44 H 1.09003 * 109.49336 * 303.14107 * 26 19 18 45 45 H 1.09003 * 109.51314 * 183.07852 * 26 19 18 46 46 H 1.08997 * 109.62669 * 350.89296 * 27 16 14 47 47 H 1.08998 * 109.62969 * 111.47111 * 27 16 14 48 48 H 1.07994 * 120.20962 * 180.27484 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3846 2.1072 -1.3948 5 1 1.4963 2.6200 0.8026 6 1 3.5885 1.4121 0.5921 7 6 2.0080 -1.2118 0.0005 8 1 3.0527 -1.2324 -0.2726 9 6 1.3471 -2.4099 0.3588 10 6 0.2151 -2.3708 1.1950 11 6 -0.4266 -3.5390 1.5417 12 6 0.0342 -4.7568 1.0733 13 6 1.1572 -4.8153 0.2415 14 6 1.6430 -6.1208 -0.2553 15 8 1.9719 -6.2441 -1.4189 16 7 1.7209 -7.1739 0.5823 17 6 2.2594 -8.4639 0.1248 18 6 3.3423 -8.9137 1.1184 19 7 2.7811 -8.9218 2.4759 20 6 3.7267 -9.5115 3.4330 21 1 4.5808 -8.8517 3.5852 22 6 3.0219 -9.8223 4.7798 23 6 3.8978 -10.9741 5.3328 24 7 4.2684 -11.7709 4.1439 25 6 4.1908 -10.9032 2.9543 26 6 2.3809 -7.5719 2.8951 27 6 1.2642 -7.0653 1.9761 28 6 1.8166 -3.6452 -0.1179 29 1 -0.4849 0.8400 -0.0004 30 1 -0.1501 -1.4243 1.5651 31 1 -1.2943 -3.5045 2.1837 32 1 -0.4761 -5.6671 1.3515 33 1 1.4593 -9.2034 0.0911 34 1 2.6962 -8.3474 -0.8669 35 1 4.1860 -8.2248 1.0777 36 1 3.6787 -9.9173 0.8579 37 1 3.0491 -8.9579 5.4432 38 1 1.9970 -10.1551 4.6164 39 1 3.3265 -11.5821 6.0342 40 1 4.7901 -10.5761 5.8160 41 1 5.1923 -12.1635 4.2454 42 1 3.4707 -11.3105 2.2446 43 1 5.1725 -10.8262 2.4869 44 1 3.2379 -6.9016 2.8296 45 1 2.0203 -7.6019 3.9233 46 1 1.0428 -6.0238 2.2088 47 1 0.3702 -7.6729 2.1169 48 1 2.6814 -3.6852 -0.7634 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580460375.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:15 Heat of formation + Delta-G solvation = 8.240158 kcal Electronic energy + Delta-G solvation = -28154.869053 eV Core-core repulsion = 24402.373264 eV Total energy + Delta-G solvation = -3752.495789 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.22749 -39.09620 -37.33760 -36.76065 -34.18692 -33.66505 -31.54419 -30.00388 -29.88902 -29.79012 -28.67394 -26.01519 -25.48712 -23.87498 -22.69350 -21.37956 -20.95818 -20.80291 -20.31430 -18.97364 -17.67196 -17.08888 -16.58989 -15.76777 -15.65450 -15.30009 -14.99312 -14.96459 -14.87184 -14.48590 -14.09584 -13.74653 -13.57658 -13.31491 -13.03078 -12.84407 -12.77838 -12.43459 -12.32884 -12.25229 -11.88031 -11.75220 -11.61019 -11.38478 -11.22426 -11.16668 -11.13350 -10.92685 -10.87844 -10.75750 -10.41658 -10.24034 -9.59557 -9.26271 -9.10709 -8.84151 -8.65866 -8.26599 -7.65883 -7.50591 -6.85595 -4.46691 2.29853 2.69468 3.02860 3.05344 3.10931 3.26368 3.51021 3.70465 3.87368 3.94058 4.23641 4.51202 4.53006 4.75708 4.80633 4.95995 4.97649 5.10072 5.16460 5.19199 5.27798 5.37517 5.45240 5.54043 5.55732 5.56433 5.59261 5.68286 5.78755 5.88413 5.91101 5.94838 6.08903 6.14652 6.23794 6.48129 6.73026 6.81014 6.84856 6.87109 6.89630 6.99494 7.02038 7.12692 7.32587 7.59493 7.77638 7.82503 7.89525 8.12148 8.48278 8.70704 8.76588 8.79969 10.09685 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.020249 B = 0.002546 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.454684 B =10996.463290 C =11332.256064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.459 4.459 8 H 0.079 0.921 9 C 0.104 3.896 10 C -0.147 4.147 11 C -0.108 4.108 12 C -0.218 4.218 13 C -0.108 4.108 14 C 0.569 3.431 15 O -0.550 6.550 16 N -0.615 5.615 17 C 0.118 3.882 18 C 0.039 3.961 19 N -0.525 5.525 20 C 0.061 3.939 21 H 0.047 0.953 22 C -0.120 4.120 23 C 0.045 3.955 24 N -0.682 5.682 25 C 0.052 3.948 26 C 0.041 3.959 27 C 0.099 3.901 28 C -0.166 4.166 29 H 0.282 0.718 30 H 0.121 0.879 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.038 0.962 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.041 0.959 41 H 0.338 0.662 42 H 0.088 0.912 43 H 0.049 0.951 44 H 0.039 0.961 45 H 0.085 0.915 46 H 0.121 0.879 47 H 0.070 0.930 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.549 -15.852 10.342 19.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.488 4.488 8 H 0.098 0.902 9 C 0.102 3.898 10 C -0.166 4.166 11 C -0.126 4.126 12 C -0.238 4.238 13 C -0.111 4.111 14 C 0.360 3.640 15 O -0.428 6.428 16 N -0.349 5.349 17 C -0.005 4.005 18 C -0.089 4.089 19 N -0.250 5.250 20 C -0.049 4.049 21 H 0.065 0.935 22 C -0.158 4.158 23 C -0.084 4.084 24 N -0.311 5.311 25 C -0.077 4.077 26 C -0.088 4.088 27 C -0.023 4.023 28 C -0.187 4.187 29 H 0.093 0.907 30 H 0.139 0.861 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.060 0.940 41 H 0.153 0.847 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.104 0.896 46 H 0.139 0.861 47 H 0.088 0.912 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.469 -16.340 9.589 19.466 hybrid contribution 1.832 1.804 0.111 2.574 sum 6.301 -14.536 9.700 18.577 Atomic orbital electron populations 1.69804 1.07589 1.29413 1.34937 1.25911 0.94766 1.01412 0.92175 0.86273 0.80696 0.80493 0.79164 1.19482 1.19962 1.18393 1.19586 0.97925 0.90974 1.40363 0.90241 1.17553 0.91485 0.91705 0.89079 1.21480 0.98559 0.97039 0.99547 1.20623 0.98826 0.92906 1.00283 1.20476 1.00303 0.96869 1.06130 1.19242 0.98995 0.91204 1.01624 1.19026 0.76063 0.83996 0.84874 1.90685 1.50159 1.84534 1.17446 1.48064 1.63864 1.11061 1.11943 1.21666 0.96086 0.84878 0.97859 1.22628 0.96298 1.01236 0.88753 1.62068 1.39974 1.21487 1.01497 1.22886 0.93611 0.95359 0.93045 0.93532 1.22751 1.00596 0.97690 0.94746 1.22815 0.98280 0.94167 0.93120 1.61866 1.32917 1.33924 1.02438 1.22713 1.00385 0.90936 0.93714 1.22560 0.98440 0.88161 0.99617 1.22355 0.95748 1.04445 0.79795 1.21040 1.02811 0.91258 1.03567 0.90705 0.86077 0.88711 0.88383 0.91140 0.88882 0.94407 0.89594 0.90946 0.89341 0.90123 0.94048 0.84672 0.89368 0.93284 0.94233 0.89625 0.86149 0.91188 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.93 10.95 55.55 0.61 -19.33 16 2 C 0.08 1.85 5.15 -17.34 -0.09 1.76 16 3 Si 0.91 18.24 29.59 -169.99 -5.03 13.21 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 7 C -0.46 -11.93 9.05 -37.73 -0.34 -12.28 16 8 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 9 C 0.10 2.71 5.56 -106.87 -0.59 2.11 16 10 C -0.15 -3.61 8.68 -38.81 -0.34 -3.94 16 11 C -0.11 -2.33 10.01 -39.73 -0.40 -2.73 16 12 C -0.22 -4.49 7.34 -38.92 -0.29 -4.78 16 13 C -0.11 -2.42 5.20 -105.04 -0.55 -2.97 16 14 C 0.57 11.97 7.32 -12.31 -0.09 11.88 16 15 O -0.55 -13.18 16.43 5.32 0.09 -13.09 16 16 N -0.62 -10.16 3.00 -173.28 -0.52 -10.68 16 17 C 0.12 1.63 6.62 -3.36 -0.02 1.61 16 18 C 0.04 0.45 5.36 -3.46 -0.02 0.43 16 19 N -0.53 -5.75 4.47 -223.87 -1.00 -6.75 16 20 C 0.06 0.57 2.65 -65.89 -0.17 0.39 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 22 C -0.12 -0.99 5.77 -24.59 -0.14 -1.13 16 23 C 0.05 0.34 7.57 -2.30 -0.02 0.32 16 24 N -0.68 -5.53 7.39 -110.79 -0.82 -6.35 16 25 C 0.05 0.44 5.97 -2.83 -0.02 0.43 16 26 C 0.04 0.48 5.52 -3.70 -0.02 0.46 16 27 C 0.10 1.39 5.20 -3.61 -0.02 1.37 16 28 C -0.17 -4.15 9.41 -38.44 -0.36 -4.51 16 29 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 30 H 0.12 3.06 6.17 -52.49 -0.32 2.74 16 31 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.10 1.75 6.45 -52.48 -0.34 1.42 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.39 7.08 -51.93 -0.37 1.02 16 35 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.81 6.25 -51.93 -0.32 0.49 16 37 H 0.07 0.55 7.96 -51.93 -0.41 0.13 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.34 2.17 8.91 -39.29 -0.35 1.82 16 42 H 0.09 0.85 7.17 -51.93 -0.37 0.48 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 0.87 7.14 -51.93 -0.37 0.49 16 46 H 0.12 1.86 4.38 -51.93 -0.23 1.63 16 47 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.10 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 372.64 15.07 5.62 5.62 Total: -1.00 -29.00 372.64 -11.82 -40.82 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -7.29 Total: 8.13 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -3.48 Total: -11.58 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: -1.73 Total: -43.11 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.00 -11.82 -40.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580460375.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.059 kcal (2) G-P(sol) polarization free energy of solvation -28.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds