Wall clock time and date at job start Tue Mar 31 2020 05:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 119.99886 * 2 1 4 4 H 1.48502 * 109.47147 * 274.97815 * 3 2 1 5 5 H 1.48501 * 109.47440 * 34.97879 * 3 2 1 6 6 H 1.48499 * 109.47126 * 154.98075 * 3 2 1 7 7 C 1.39933 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00454 * 163.01870 * 7 2 1 9 9 C 1.41444 * 120.00002 * 343.01945 * 7 2 1 10 10 C 1.40783 * 120.17476 * 334.75118 * 9 7 2 11 11 C 1.37713 * 120.03972 * 179.97438 * 10 9 7 12 12 C 1.38369 * 120.40997 * 0.02562 * 11 10 9 13 13 C 1.39878 * 120.36070 * 359.97438 * 12 11 10 14 14 C 1.47887 * 120.02779 * 180.02562 * 13 12 11 15 15 O 1.21548 * 120.00275 * 136.13355 * 14 13 12 16 16 N 1.34779 * 119.99867 * 316.13602 * 14 13 12 17 17 C 1.47082 * 120.87631 * 182.84499 * 16 14 13 18 18 C 1.53695 * 108.27404 * 128.75818 * 17 16 14 19 19 N 1.46900 * 109.25858 * 54.08165 * 18 17 16 20 20 C 1.46900 * 111.00155 * 172.60944 * 19 18 17 21 21 H 1.08995 * 110.63161 * 69.92400 * 20 19 18 22 22 C 1.55146 * 110.70505 * 193.22020 * 20 19 18 23 23 C 1.54906 * 101.65180 * 154.03210 * 22 20 19 24 24 N 1.47839 * 104.79834 * 322.93042 * 23 22 20 25 25 C 1.47447 * 108.56762 * 24.09445 * 24 23 22 26 26 C 1.46903 * 111.26604 * 296.75823 * 19 18 17 27 27 C 1.47079 * 120.88386 * 3.12706 * 16 14 13 28 28 C 1.39029 * 119.95098 * 0.02562 * 13 12 11 29 29 H 0.96993 * 119.99835 * 0.02562 * 1 2 3 30 30 H 1.07994 * 119.98389 * 359.95946 * 10 9 7 31 31 H 1.07995 * 119.79741 * 179.97438 * 11 10 9 32 32 H 1.08005 * 119.82366 * 179.97438 * 12 11 10 33 33 H 1.09004 * 109.63066 * 248.52088 * 17 16 14 34 34 H 1.08992 * 109.63128 * 9.10719 * 17 16 14 35 35 H 1.08998 * 109.65244 * 294.07765 * 18 17 16 36 36 H 1.09004 * 109.41820 * 173.94400 * 18 17 16 37 37 H 1.09002 * 110.98878 * 272.12568 * 22 20 19 38 38 H 1.08997 * 110.98983 * 35.94461 * 22 20 19 39 39 H 1.09001 * 110.37474 * 204.09656 * 23 22 20 40 40 H 1.09003 * 110.46559 * 81.80616 * 23 22 20 41 41 H 1.00901 * 111.00167 * 146.36019 * 24 23 22 42 42 H 1.09002 * 109.88659 * 239.60317 * 25 24 23 43 43 H 1.09000 * 109.88566 * 118.41778 * 25 24 23 44 44 H 1.09003 * 109.49336 * 303.14107 * 26 19 18 45 45 H 1.09003 * 109.51314 * 183.07852 * 26 19 18 46 46 H 1.08997 * 109.62669 * 350.89296 * 27 16 14 47 47 H 1.08998 * 109.62969 * 111.47111 * 27 16 14 48 48 H 1.07994 * 120.20962 * 180.27484 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3846 2.1072 -1.3948 5 1 1.4963 2.6200 0.8026 6 1 3.5885 1.4121 0.5921 7 6 2.0080 -1.2118 0.0005 8 1 3.0527 -1.2324 -0.2726 9 6 1.3471 -2.4099 0.3588 10 6 0.2151 -2.3708 1.1950 11 6 -0.4266 -3.5390 1.5417 12 6 0.0342 -4.7568 1.0733 13 6 1.1572 -4.8153 0.2415 14 6 1.6430 -6.1208 -0.2553 15 8 1.9719 -6.2441 -1.4189 16 7 1.7209 -7.1739 0.5823 17 6 2.2594 -8.4639 0.1248 18 6 3.3423 -8.9137 1.1184 19 7 2.7811 -8.9218 2.4759 20 6 3.7267 -9.5115 3.4330 21 1 4.5808 -8.8517 3.5852 22 6 3.0219 -9.8223 4.7798 23 6 3.8978 -10.9741 5.3328 24 7 4.2684 -11.7709 4.1439 25 6 4.1908 -10.9032 2.9543 26 6 2.3809 -7.5719 2.8951 27 6 1.2642 -7.0653 1.9761 28 6 1.8166 -3.6452 -0.1179 29 1 -0.4849 0.8400 -0.0004 30 1 -0.1501 -1.4243 1.5651 31 1 -1.2943 -3.5045 2.1837 32 1 -0.4761 -5.6671 1.3515 33 1 1.4593 -9.2034 0.0911 34 1 2.6962 -8.3474 -0.8669 35 1 4.1860 -8.2248 1.0777 36 1 3.6787 -9.9173 0.8579 37 1 3.0491 -8.9579 5.4432 38 1 1.9970 -10.1551 4.6164 39 1 3.3265 -11.5821 6.0342 40 1 4.7901 -10.5761 5.8160 41 1 5.1923 -12.1635 4.2454 42 1 3.4707 -11.3105 2.2446 43 1 5.1725 -10.8262 2.4869 44 1 3.2379 -6.9016 2.8296 45 1 2.0203 -7.6019 3.9233 46 1 1.0428 -6.0238 2.2088 47 1 0.3702 -7.6729 2.1169 48 1 2.6814 -3.6852 -0.7634 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580460375.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:14 Heat of formation + Delta-G solvation = -11.049077 kcal Electronic energy + Delta-G solvation = -28155.705497 eV Core-core repulsion = 24402.373264 eV Total energy + Delta-G solvation = -3753.332233 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.52622 -40.17793 -38.93882 -38.01404 -35.74315 -35.11843 -32.72601 -31.80081 -31.40020 -30.62825 -29.61643 -27.33089 -27.09245 -25.01210 -24.15078 -22.66234 -22.31218 -21.89103 -21.25845 -20.41546 -19.23897 -17.98217 -17.71955 -17.34627 -16.96161 -16.85407 -16.53047 -16.33823 -15.93643 -15.54157 -15.30987 -15.09977 -14.79528 -14.59870 -14.35635 -14.14169 -13.94529 -13.57631 -13.51010 -13.42860 -13.33022 -12.95698 -12.84062 -12.77030 -12.59842 -12.45526 -12.27023 -12.20706 -12.00052 -11.92680 -11.81718 -11.69088 -11.40560 -11.08470 -10.79069 -9.90302 -9.51824 -9.43626 -9.34366 -9.29691 -8.68816 -6.41318 0.50274 0.90242 1.37284 1.44846 1.52356 1.79634 2.01324 2.19652 2.64940 2.75450 3.31820 3.52371 3.56801 3.64904 3.86005 3.92273 3.98148 4.07918 4.19888 4.30798 4.34530 4.35700 4.40555 4.42300 4.50737 4.57549 4.66770 4.70555 4.81413 4.84034 4.93142 4.93374 4.99663 5.00093 5.03134 5.04068 5.15846 5.23127 5.27142 5.45524 5.51392 5.78384 5.87738 5.91660 5.96630 5.99403 6.00385 6.19118 6.38064 6.46493 6.58266 6.85532 6.89857 7.11634 8.29103 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.020249 B = 0.002546 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.454684 B =10996.463290 C =11332.256064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.038 3.962 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.260 1.260 6 H -0.260 1.260 7 C -0.501 4.501 8 H 0.070 0.930 9 C 0.078 3.922 10 C -0.164 4.164 11 C -0.103 4.103 12 C -0.195 4.195 13 C -0.112 4.112 14 C 0.564 3.436 15 O -0.590 6.590 16 N -0.604 5.604 17 C 0.115 3.885 18 C 0.048 3.952 19 N -0.522 5.522 20 C 0.059 3.941 21 H 0.042 0.958 22 C -0.116 4.116 23 C 0.047 3.953 24 N -0.691 5.691 25 C 0.056 3.944 26 C 0.047 3.953 27 C 0.096 3.904 28 C -0.195 4.195 29 H 0.291 0.709 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.022 0.978 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.051 0.949 41 H 0.347 0.653 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.022 0.978 45 H 0.110 0.890 46 H 0.106 0.894 47 H 0.093 0.907 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.021 -17.470 12.460 22.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.184 1.184 6 H -0.184 1.184 7 C -0.530 4.530 8 H 0.088 0.912 9 C 0.076 3.924 10 C -0.184 4.184 11 C -0.121 4.121 12 C -0.214 4.214 13 C -0.115 4.115 14 C 0.355 3.645 15 O -0.472 6.472 16 N -0.336 5.336 17 C -0.007 4.007 18 C -0.081 4.081 19 N -0.247 5.247 20 C -0.050 4.050 21 H 0.060 0.940 22 C -0.154 4.154 23 C -0.082 4.082 24 N -0.321 5.321 25 C -0.074 4.074 26 C -0.082 4.082 27 C -0.026 4.026 28 C -0.216 4.216 29 H 0.102 0.898 30 H 0.128 0.872 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.041 0.959 36 H 0.129 0.871 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.164 0.836 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.040 0.960 45 H 0.128 0.872 46 H 0.124 0.876 47 H 0.112 0.888 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.938 -18.011 11.757 21.866 hybrid contribution 1.956 2.098 -0.481 2.908 sum 5.894 -15.913 11.276 20.374 Atomic orbital electron populations 1.69832 1.08807 1.30810 1.35339 1.26706 0.95571 1.04339 0.91138 0.85192 0.79207 0.76000 0.79326 1.19085 1.18385 1.18411 1.19792 0.97946 0.92460 1.42809 0.91171 1.17842 0.92527 0.92111 0.89933 1.21500 0.98812 0.97891 1.00169 1.20991 0.99229 0.92021 0.99907 1.20851 0.98773 0.98036 1.03773 1.19484 0.99247 0.91351 1.01413 1.18855 0.76284 0.84579 0.84825 1.90658 1.52180 1.85192 1.19184 1.48119 1.62310 1.10789 1.12427 1.21874 0.97274 0.83695 0.97898 1.22555 0.94754 1.02087 0.88679 1.62091 1.40501 1.20681 1.01467 1.22939 0.93250 0.95543 0.93253 0.93988 1.22734 1.00153 0.98380 0.94176 1.22835 0.98607 0.93841 0.92929 1.61849 1.33815 1.33982 1.02503 1.22639 1.00568 0.90295 0.93888 1.22487 0.97104 0.88282 1.00280 1.22505 0.97515 1.04174 0.78399 1.21005 1.03322 0.92434 1.04795 0.89820 0.87158 0.85087 0.84650 0.89248 0.90437 0.95924 0.87123 0.90098 0.90081 0.89591 0.93032 0.83600 0.90216 0.92440 0.95989 0.87217 0.87604 0.88847 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.27 10.95 21.82 0.24 -42.03 16 2 C 0.04 1.89 5.15 85.25 0.44 2.33 16 3 Si 0.98 38.09 29.59 68.60 2.03 40.12 16 4 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 5 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 6 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 7 C -0.50 -27.45 9.05 23.47 0.21 -27.23 16 8 H 0.07 3.79 7.90 -2.91 -0.02 3.77 16 9 C 0.08 4.25 5.56 -21.32 -0.12 4.13 16 10 C -0.16 -8.22 8.68 22.77 0.20 -8.02 16 11 C -0.10 -4.32 10.01 22.18 0.22 -4.10 16 12 C -0.19 -7.73 7.34 22.70 0.17 -7.56 16 13 C -0.11 -5.11 5.20 -20.14 -0.10 -5.21 16 14 C 0.56 24.00 7.32 86.80 0.64 24.64 16 15 O -0.59 -29.24 16.43 -3.87 -0.06 -29.30 16 16 N -0.60 -19.34 3.00 -820.43 -2.46 -21.80 16 17 C 0.11 3.02 6.62 86.50 0.57 3.59 16 18 C 0.05 1.01 5.36 86.54 0.46 1.47 16 19 N -0.52 -10.16 4.47 -862.19 -3.85 -14.01 16 20 C 0.06 0.97 2.65 46.10 0.12 1.09 16 21 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 22 C -0.12 -1.60 5.77 31.98 0.18 -1.41 16 23 C 0.05 0.56 7.57 86.77 0.66 1.22 16 24 N -0.69 -9.43 7.39 -504.43 -3.73 -13.15 16 25 C 0.06 0.81 5.97 86.64 0.52 1.33 16 26 C 0.05 1.01 5.52 86.38 0.48 1.48 16 27 C 0.10 2.44 5.20 86.35 0.45 2.89 16 28 C -0.20 -10.26 9.41 23.01 0.22 -10.05 16 29 H 0.29 13.40 8.30 -92.71 -0.77 12.63 16 30 H 0.11 5.71 6.17 -2.91 -0.02 5.69 16 31 H 0.13 4.51 8.06 -2.91 -0.02 4.48 16 32 H 0.14 4.35 6.45 -2.91 -0.02 4.33 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.08 2.32 7.08 -2.39 -0.02 2.30 16 35 H 0.02 0.55 8.14 -2.39 -0.02 0.54 16 36 H 0.11 1.83 6.25 -2.39 -0.01 1.81 16 37 H 0.08 0.97 7.96 -2.39 -0.02 0.96 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.35 3.59 8.91 -89.69 -0.80 2.80 16 42 H 0.08 1.32 7.17 -2.39 -0.02 1.31 16 43 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.02 0.55 8.14 -2.39 -0.02 0.54 16 45 H 0.11 1.86 7.14 -2.39 -0.02 1.84 16 46 H 0.11 3.04 4.38 -2.39 -0.01 3.02 16 47 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.08 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -66.00 372.64 -2.36 -68.35 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.18 Total: 31.24 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: 5.31 Total: -19.41 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -9.81 Total: -91.00 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.06 Total: -29.30 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Total: -66.00 -2.36 -68.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580460375.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.304 kcal (2) G-P(sol) polarization free energy of solvation -65.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds