Wall clock time and date at job start Tue Mar 31 2020 05:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86798 * 120.00065 * 2 1 4 4 H 1.48505 * 109.46841 * 269.99764 * 3 2 1 5 5 H 1.48509 * 109.47302 * 29.99062 * 3 2 1 6 6 H 1.48494 * 109.47451 * 149.99631 * 3 2 1 7 7 C 1.39933 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00230 * 163.43833 * 7 2 1 9 9 C 1.41442 * 120.00154 * 343.44454 * 7 2 1 10 10 C 1.40779 * 120.17923 * 157.00729 * 9 7 2 11 11 C 1.37717 * 120.03885 * 179.97438 * 10 9 7 12 12 C 1.38363 * 120.41281 * 0.04510 * 11 10 9 13 13 C 1.39884 * 120.36071 * 359.95343 * 12 11 10 14 14 C 1.47883 * 120.02783 * 180.30114 * 13 12 11 15 15 O 1.21545 * 120.00410 * 221.27933 * 14 13 12 16 16 N 1.34780 * 120.00001 * 41.27984 * 14 13 12 17 17 C 1.47080 * 120.88162 * 355.26641 * 16 14 13 18 18 C 1.53698 * 108.27584 * 128.75244 * 17 16 14 19 19 N 1.46902 * 109.25480 * 54.08675 * 18 17 16 20 20 C 1.46892 * 111.00148 * 172.60602 * 19 18 17 21 21 H 1.09001 * 110.64579 * 77.44875 * 20 19 18 22 22 C 1.54600 * 110.72282 * 314.30163 * 20 19 18 23 23 C 1.54001 * 105.13935 * 219.68410 * 22 20 19 24 24 N 1.47900 * 107.05815 * 358.77544 * 23 22 20 25 25 C 1.48535 * 105.82030 * 25.32995 * 24 23 22 26 26 C 1.46902 * 111.26749 * 296.75488 * 19 18 17 27 27 C 1.47084 * 120.88162 * 175.54916 * 16 14 13 28 28 C 1.39030 * 119.94862 * 0.02562 * 13 12 11 29 29 H 0.96998 * 120.00102 * 0.02562 * 1 2 3 30 30 H 1.07996 * 119.98370 * 359.97091 * 10 9 7 31 31 H 1.07999 * 119.79149 * 180.02562 * 11 10 9 32 32 H 1.07999 * 119.82268 * 179.97438 * 12 11 10 33 33 H 1.09000 * 109.63197 * 248.52525 * 17 16 14 34 34 H 1.09001 * 109.62619 * 9.10819 * 17 16 14 35 35 H 1.09003 * 109.65115 * 294.08298 * 18 17 16 36 36 H 1.09000 * 109.44249 * 173.95900 * 18 17 16 37 37 H 1.08997 * 110.31025 * 338.59466 * 22 20 19 38 38 H 1.09001 * 110.31128 * 100.76923 * 22 20 19 39 39 H 1.08996 * 109.91587 * 118.12937 * 23 22 20 40 40 H 1.08998 * 109.91417 * 239.22670 * 23 22 20 41 41 H 1.00906 * 110.99871 * 264.82086 * 24 23 22 42 42 H 1.09004 * 110.66523 * 202.35789 * 25 24 23 43 43 H 1.08994 * 110.66540 * 79.22834 * 25 24 23 44 44 H 1.09000 * 109.49068 * 303.14273 * 26 19 18 45 45 H 1.09000 * 109.49144 * 183.06497 * 26 19 18 46 46 H 1.08996 * 109.62651 * 350.88947 * 27 16 14 47 47 H 1.08989 * 109.62922 * 111.47632 * 27 16 14 48 48 H 1.07999 * 120.20516 * 179.97438 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4396 2.6528 0.6999 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2118 0.0005 8 1 3.0544 -1.2314 -0.2661 9 6 1.3448 -2.4113 0.3501 10 6 1.8458 -3.6511 -0.0900 11 6 1.1980 -4.8172 0.2525 12 6 0.0530 -4.7805 1.0284 13 6 -0.4596 -3.5579 1.4750 14 6 -1.6801 -3.5277 2.3095 15 8 -2.5295 -2.6807 2.1136 16 7 -1.8506 -4.4395 3.2873 17 6 -0.8868 -5.5346 3.4748 18 6 -0.4616 -5.5549 4.9517 19 7 -1.6590 -5.6300 5.7995 20 6 -1.2946 -5.8279 7.2087 21 1 -0.9541 -4.8925 7.6526 22 6 -0.2128 -6.9239 7.3453 23 6 -0.6090 -7.7261 8.5988 24 7 -1.8271 -7.0945 9.1510 25 6 -2.4861 -6.4159 8.0057 26 6 -2.5031 -4.4389 5.6363 27 6 -3.0087 -4.3693 4.1914 28 6 0.1826 -2.3716 1.1384 29 1 -0.4850 0.8400 -0.0004 30 1 2.7385 -3.6879 -0.6966 31 1 1.5861 -5.7661 -0.0869 32 1 -0.4475 -5.7007 1.2911 33 1 -1.3549 -6.4833 3.2123 34 1 -0.0143 -5.3665 2.8436 35 1 0.0934 -4.6465 5.1858 36 1 0.1694 -6.4244 5.1356 37 1 -0.2151 -7.5693 6.4669 38 1 0.7695 -6.4712 7.4807 39 1 -0.8178 -8.7607 8.3269 40 1 0.1964 -7.6904 9.3323 41 1 -1.5944 -6.4340 9.8774 42 1 -3.1440 -5.6209 8.3566 43 1 -3.0379 -7.1338 7.3990 44 1 -1.9196 -3.5461 5.8609 45 1 -3.3527 -4.4993 6.3164 46 1 -3.5395 -3.4304 4.0341 47 1 -3.6767 -5.2081 3.9964 48 1 -0.2098 -1.4254 1.4806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580460376.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:20 Heat of formation + Delta-G solvation = 14.059766 kcal Electronic energy + Delta-G solvation = -28448.986539 eV Core-core repulsion = 24696.743106 eV Total energy + Delta-G solvation = -3752.243432 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.20161 -39.09182 -37.32494 -36.69564 -34.16474 -33.64066 -31.61733 -30.08453 -29.59010 -29.47964 -28.76534 -25.92099 -25.51281 -23.81728 -22.67340 -21.76819 -21.01984 -20.72795 -20.09399 -18.76258 -17.65595 -17.01284 -16.51260 -15.79769 -15.52391 -15.23124 -15.01285 -14.88161 -14.84933 -14.58879 -14.02840 -13.72483 -13.67995 -13.40707 -12.97408 -12.88781 -12.58463 -12.39419 -12.33498 -12.11965 -11.81174 -11.72405 -11.44525 -11.30112 -11.19443 -11.13233 -10.97631 -10.92454 -10.81203 -10.73218 -10.37252 -10.12051 -9.74107 -9.28149 -9.08211 -8.90562 -8.58812 -8.19879 -7.62711 -7.53131 -6.81844 -4.45863 2.30504 2.76421 3.03527 3.05892 3.11730 3.33702 3.56803 3.74342 3.87087 3.99389 4.32519 4.53109 4.63529 4.72003 4.83829 5.01853 5.08186 5.09529 5.20172 5.26470 5.31044 5.41460 5.51384 5.56271 5.58492 5.60173 5.61074 5.73989 5.82688 5.88178 5.96082 5.99728 6.10816 6.13330 6.28909 6.34371 6.66462 6.81535 6.91072 6.93221 6.94803 6.99380 7.03099 7.18425 7.35140 7.64321 7.76125 7.86310 7.97050 8.12934 8.46418 8.76011 8.79482 8.85767 10.10236 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.017079 B = 0.002833 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.040476 B = 9880.686208 C =10022.992810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.071 3.929 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.102 3.898 10 C -0.215 4.215 11 C -0.095 4.095 12 C -0.230 4.230 13 C -0.118 4.118 14 C 0.567 3.433 15 O -0.542 6.542 16 N -0.617 5.617 17 C 0.094 3.906 18 C 0.036 3.964 19 N -0.525 5.525 20 C 0.047 3.953 21 H 0.047 0.953 22 C -0.152 4.152 23 C 0.045 3.955 24 N -0.675 5.675 25 C 0.055 3.945 26 C 0.043 3.957 27 C 0.119 3.881 28 C -0.106 4.106 29 H 0.285 0.715 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.126 0.874 35 H 0.038 0.962 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.335 0.665 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.037 0.963 45 H 0.083 0.917 46 H 0.092 0.908 47 H 0.069 0.931 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.267 -10.731 14.555 18.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.148 4.148 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.099 3.901 10 C -0.235 4.235 11 C -0.113 4.113 12 C -0.250 4.250 13 C -0.121 4.121 14 C 0.359 3.641 15 O -0.420 6.420 16 N -0.352 5.352 17 C -0.029 4.029 18 C -0.093 4.093 19 N -0.250 5.250 20 C -0.064 4.064 21 H 0.065 0.935 22 C -0.191 4.191 23 C -0.085 4.085 24 N -0.301 5.301 25 C -0.075 4.075 26 C -0.085 4.085 27 C -0.005 4.005 28 C -0.126 4.126 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.086 0.914 34 H 0.143 0.857 35 H 0.057 0.943 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.150 0.850 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.056 0.944 45 H 0.101 0.899 46 H 0.111 0.889 47 H 0.087 0.913 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.649 -11.105 14.313 18.309 hybrid contribution 1.420 2.209 0.041 2.626 sum -1.229 -8.896 14.355 16.932 Atomic orbital electron populations 1.69804 1.07494 1.29730 1.33427 1.26001 0.94800 1.01607 0.92415 0.86283 0.80530 0.80472 0.79339 1.19340 1.19984 1.18403 1.19606 0.97736 0.90912 1.40319 0.90105 1.17576 0.91216 0.92441 0.88862 1.21074 1.03108 0.92707 1.06611 1.20446 0.95814 0.96724 0.98300 1.20476 1.00563 0.94887 1.09062 1.19419 0.95402 0.95413 1.01863 1.19003 0.86749 0.79232 0.79119 1.90706 1.44431 1.37495 1.69321 1.48064 1.25390 1.28917 1.32809 1.22616 0.95125 0.89690 0.95425 1.22751 0.91576 1.01310 0.93616 1.62071 1.18777 1.38701 1.05445 1.23291 0.96272 0.97328 0.89470 0.93548 1.22962 0.98164 0.97851 1.00095 1.22689 0.91508 0.99341 0.94998 1.62767 1.23314 1.33476 1.10543 1.23138 0.95617 0.97675 0.91102 1.22507 0.97349 0.90985 0.97698 1.21541 0.88590 1.03135 0.87187 1.21568 0.96959 0.95838 0.98202 0.90400 0.88663 0.88826 0.88205 0.91382 0.85684 0.94321 0.89408 0.89608 0.91447 0.90368 0.91658 0.85003 0.91067 0.88955 0.94428 0.89883 0.88929 0.91315 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.62 10.78 55.55 0.60 -20.02 16 2 C 0.07 1.77 5.18 -17.35 -0.09 1.68 16 3 Si 0.91 18.49 29.59 -169.99 -5.03 13.46 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.46 -11.83 9.07 -37.73 -0.34 -12.17 16 8 H 0.08 1.98 7.90 -52.48 -0.41 1.56 16 9 C 0.10 2.65 5.59 -106.87 -0.60 2.05 16 10 C -0.22 -5.01 9.78 -38.81 -0.38 -5.39 16 11 C -0.09 -1.97 10.01 -39.73 -0.40 -2.36 16 12 C -0.23 -4.77 7.33 -38.92 -0.29 -5.05 16 13 C -0.12 -2.76 5.33 -105.04 -0.56 -3.32 16 14 C 0.57 12.61 7.35 -12.31 -0.09 12.51 16 15 O -0.54 -13.83 16.41 5.33 0.09 -13.74 16 16 N -0.62 -10.68 3.00 -173.28 -0.52 -11.20 16 17 C 0.09 1.36 5.21 -3.36 -0.02 1.34 16 18 C 0.04 0.44 5.26 -3.46 -0.02 0.42 16 19 N -0.52 -5.90 4.50 -223.82 -1.01 -6.91 16 20 C 0.05 0.44 2.83 -65.85 -0.19 0.26 16 21 H 0.05 0.47 8.07 -51.93 -0.42 0.05 16 22 C -0.15 -1.26 5.31 -25.37 -0.13 -1.40 16 23 C 0.04 0.34 7.52 -2.75 -0.02 0.32 16 24 N -0.67 -5.54 7.51 -110.08 -0.83 -6.37 16 25 C 0.05 0.47 6.61 -1.90 -0.01 0.46 16 26 C 0.04 0.52 5.51 -3.70 -0.02 0.50 16 27 C 0.12 1.72 6.58 -3.60 -0.02 1.70 16 28 C -0.11 -2.77 8.31 -38.44 -0.32 -3.09 16 29 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 30 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 31 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.10 1.79 6.10 -52.49 -0.32 1.47 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.13 1.98 4.08 -51.93 -0.21 1.77 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.91 5.82 -51.93 -0.30 0.61 16 37 H 0.09 0.76 6.69 -51.93 -0.35 0.41 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.33 2.31 8.92 -39.29 -0.35 1.96 16 42 H 0.07 0.56 8.01 -51.93 -0.42 0.15 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.82 7.49 -51.93 -0.39 0.43 16 46 H 0.09 1.47 7.09 -51.93 -0.37 1.10 16 47 H 0.07 0.92 8.14 -51.94 -0.42 0.50 16 48 H 0.13 3.71 5.99 -52.49 -0.31 3.40 16 LS Contribution 371.59 15.07 5.60 5.60 Total: -1.00 -29.46 371.59 -11.81 -41.27 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -7.22 Total: 9.45 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -3.50 Total: -11.53 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -1.75 Total: -44.50 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.09 Total: -13.74 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.46 -11.81 -41.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580460376.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.325 kcal (2) G-P(sol) polarization free energy of solvation -29.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds