Wall clock time and date at job start Tue Mar 31 2020 06:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47108 * 2 1 4 4 C 1.50700 * 109.47288 * 240.00127 * 2 1 3 5 5 H 1.07993 * 120.00317 * 240.00296 * 4 2 1 6 6 C 1.37879 * 119.99992 * 60.00244 * 4 2 1 7 7 N 1.31514 * 119.99856 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00195 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47003 * 270.00013 * 8 6 4 10 10 H 1.48501 * 109.46718 * 29.99955 * 8 6 4 11 11 H 1.48499 * 109.46972 * 149.99492 * 8 6 4 12 12 N 1.46899 * 109.46797 * 120.00024 * 2 1 3 13 13 C 1.46894 * 111.00302 * 274.99810 * 12 2 1 14 14 C 1.52999 * 109.47349 * 180.02562 * 13 12 2 15 15 C 1.50702 * 109.47400 * 180.02562 * 14 13 12 16 16 O 1.21286 * 119.99878 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00312 * 180.02562 * 15 14 13 18 18 C 1.39974 * 120.00023 * 175.51610 * 17 15 14 19 19 C 1.38832 * 120.06945 * 34.68405 * 18 17 15 20 20 C 1.38224 * 119.92945 * 179.81139 * 19 18 17 21 21 Cl 1.73597 * 119.96891 * 180.18509 * 20 19 18 22 22 C 1.38416 * 120.06850 * 0.44285 * 20 19 18 23 23 C 1.38243 * 120.13229 * 359.78550 * 22 20 19 24 24 C 1.38233 * 120.07105 * 0.02562 * 23 22 20 25 25 Cl 1.73604 * 120.03392 * 179.97438 * 24 23 22 26 26 H 1.09001 * 109.47341 * 300.00155 * 1 2 3 27 27 H 1.09001 * 109.47108 * 59.99618 * 1 2 3 28 28 H 1.08995 * 109.47292 * 179.97438 * 1 2 3 29 29 H 0.96997 * 120.00010 * 179.97438 * 7 6 4 30 30 H 1.00894 * 111.00277 * 38.95865 * 12 2 1 31 31 H 1.08998 * 109.47464 * 300.00106 * 13 12 2 32 32 H 1.09005 * 109.47116 * 60.00174 * 13 12 2 33 33 H 1.09001 * 109.47180 * 300.00185 * 14 13 12 34 34 H 1.08997 * 109.47148 * 60.00193 * 14 13 12 35 35 H 0.97001 * 119.99872 * 355.51313 * 17 15 14 36 36 H 1.07998 * 120.03641 * 359.97438 * 19 18 17 37 37 H 1.07997 * 119.93605 * 179.76943 * 22 20 19 38 38 H 1.08005 * 119.96480 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3226 -1.1193 -4.0080 9 1 3.6306 -0.5438 -4.4118 10 1 2.4881 -2.5652 -3.7123 11 1 1.3445 -0.9488 -5.1123 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2225 2.3469 14 6 2.5961 -0.5330 3.5742 15 6 2.6599 0.4055 4.7515 16 8 2.3278 1.5648 4.6216 17 7 3.0871 -0.0429 5.9485 18 6 3.2359 0.8485 7.0174 19 6 2.3617 1.9177 7.1583 20 6 2.5089 2.7940 8.2171 21 17 1.4134 4.1286 8.3970 22 6 3.5321 2.6115 9.1312 23 6 4.4070 1.5504 8.9909 24 6 4.2627 0.6684 7.9363 25 17 5.3623 -0.6634 7.7606 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.7089 1.1614 -3.4843 30 1 1.4495 -1.4979 1.4100 31 1 2.7588 1.0461 2.1183 32 1 1.0870 0.6163 2.5525 33 1 1.9200 -1.3568 3.8030 34 1 3.5915 -0.9264 3.3683 35 1 3.2915 -0.9835 6.0693 36 1 1.5659 2.0633 6.4428 37 1 3.6474 3.2996 9.9556 38 1 5.2047 1.4108 9.7055 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585116232.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:58 Heat of formation + Delta-G solvation = -26.846417 kcal Electronic energy + Delta-G solvation = -22432.529566 eV Core-core repulsion = 18747.403773 eV Total energy + Delta-G solvation = -3685.125794 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.064 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.93682 -39.06392 -37.18775 -36.61137 -36.16374 -35.03848 -33.06143 -31.31964 -30.90037 -29.76921 -27.28340 -25.13313 -24.04693 -23.18725 -22.04561 -20.48422 -20.19962 -18.48143 -17.29979 -16.95712 -16.31133 -16.18582 -15.46920 -15.42363 -14.77969 -14.61785 -14.28295 -14.10906 -13.89053 -13.30398 -12.98444 -12.83350 -12.81946 -12.47383 -12.22885 -11.69610 -11.57950 -11.47901 -11.40754 -11.33160 -11.06440 -10.89718 -10.71793 -10.70008 -10.42196 -10.11553 -10.06309 -9.80404 -9.15151 -9.00234 -8.60896 -8.34741 -7.27713 -5.96848 -4.00542 0.46664 0.72157 1.55425 1.76989 2.36041 2.67741 3.08990 3.33911 3.39963 3.43551 4.23095 4.41604 4.51539 4.56111 4.73479 4.80185 5.10699 5.24633 5.25007 5.34659 5.39502 5.59652 5.70431 5.73504 5.75252 5.84890 6.29181 6.30794 6.47926 6.72142 6.85310 6.98803 7.11152 7.36856 7.75072 7.85341 7.89010 8.27866 8.51700 8.60706 9.06335 9.64673 11.10262 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.017193 B = 0.002315 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.168608 B =12091.704781 C =13401.540879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.212 3.788 3 H 0.035 0.965 4 C -0.496 4.496 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.275 1.275 11 H -0.288 1.288 12 N -0.685 5.685 13 C 0.074 3.926 14 C -0.135 4.135 15 C 0.518 3.482 16 O -0.510 6.510 17 N -0.676 5.676 18 C 0.178 3.822 19 C -0.106 4.106 20 C -0.012 4.012 21 Cl -0.056 7.056 22 C -0.119 4.119 23 C -0.079 4.079 24 C -0.066 4.066 25 Cl -0.056 7.056 26 H 0.006 0.994 27 H 0.089 0.911 28 H 0.027 0.973 29 H 0.260 0.740 30 H 0.324 0.676 31 H 0.073 0.927 32 H 0.028 0.972 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.416 0.584 36 H 0.162 0.838 37 H 0.143 0.857 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.188 -0.433 27.441 27.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.199 1.199 11 H -0.214 1.214 12 N -0.315 5.315 13 C -0.056 4.056 14 C -0.175 4.175 15 C 0.307 3.693 16 O -0.383 6.383 17 N -0.323 5.323 18 C 0.081 3.919 19 C -0.127 4.127 20 C -0.039 4.039 21 Cl -0.027 7.027 22 C -0.139 4.139 23 C -0.098 4.098 24 C -0.096 4.096 25 Cl -0.027 7.027 26 H 0.025 0.975 27 H 0.108 0.892 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.140 0.860 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.113 0.887 34 H 0.125 0.875 35 H 0.253 0.747 36 H 0.179 0.821 37 H 0.161 0.839 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.526 0.573 26.909 27.476 hybrid contribution -0.530 -0.775 -0.539 1.082 sum 4.996 -0.201 26.370 26.840 Atomic orbital electron populations 1.22428 1.00640 0.99159 1.00631 1.19166 0.89665 0.94520 0.86216 0.94743 1.21149 1.30258 1.12470 0.89587 0.91924 1.24965 0.95341 0.95233 0.99075 1.69887 1.37215 1.23208 1.23361 0.86499 0.78455 0.79963 0.82456 1.20767 1.19950 1.21429 1.60829 1.58109 1.09098 1.03463 1.21622 0.99438 0.95551 0.89003 1.21720 1.05169 0.98199 0.92402 1.21298 0.75186 0.89537 0.83267 1.90727 1.45278 1.18590 1.83700 1.43757 1.67674 1.11606 1.09255 1.17307 0.93064 0.92893 0.88665 1.21217 1.00016 0.93798 0.97639 1.20838 0.94291 0.91945 0.96867 1.98397 1.62362 1.44767 1.97179 1.20988 0.94323 0.98829 0.99768 1.20822 0.99527 0.92919 0.96580 1.20859 0.93961 0.94802 0.99963 1.98386 1.61688 1.45201 1.97424 0.97530 0.89223 0.95344 0.93047 0.86033 0.90866 0.95380 0.88729 0.87489 0.74654 0.82102 0.83890 0.83591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.94 37.16 0.33 -3.77 16 2 C 0.21 5.34 2.57 -68.87 -0.18 5.17 16 3 H 0.03 0.97 7.80 -51.93 -0.41 0.57 16 4 C -0.50 -13.71 8.84 -34.44 -0.30 -14.01 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.92 11.32 55.43 0.63 -25.29 16 8 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 N -0.69 -14.06 6.23 -107.96 -0.67 -14.74 16 13 C 0.07 1.31 4.77 -3.83 -0.02 1.30 16 14 C -0.13 -1.68 5.96 -27.88 -0.17 -1.85 16 15 C 0.52 6.66 7.68 -10.99 -0.08 6.58 16 16 O -0.51 -8.38 13.40 5.55 0.07 -8.31 16 17 N -0.68 -6.76 5.05 -9.84 -0.05 -6.81 16 18 C 0.18 1.87 6.30 -83.65 -0.53 1.34 16 19 C -0.11 -1.21 8.48 -39.37 -0.33 -1.54 16 20 C -0.01 -0.12 6.32 -39.52 -0.25 -0.37 16 21 Cl -0.06 -0.55 28.95 -51.86 -1.50 -2.05 16 22 C -0.12 -0.91 9.82 -39.51 -0.39 -1.30 16 23 C -0.08 -0.58 9.82 -39.58 -0.39 -0.97 16 24 C -0.07 -0.59 6.34 -39.32 -0.25 -0.84 16 25 Cl -0.06 -0.45 27.96 -51.86 -1.45 -1.90 16 26 H 0.01 0.13 7.45 -51.93 -0.39 -0.26 16 27 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 28 H 0.03 0.65 8.13 -51.93 -0.42 0.22 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 30 H 0.32 6.09 8.47 -39.29 -0.33 5.76 16 31 H 0.07 1.44 8.01 -51.93 -0.42 1.02 16 32 H 0.03 0.53 7.39 -51.93 -0.38 0.14 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.42 3.07 8.08 -40.82 -0.33 2.74 16 36 H 0.16 2.12 6.20 -52.49 -0.33 1.80 16 37 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.15 0.71 8.06 -52.48 -0.42 0.28 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -30.89 351.05 -9.91 -40.80 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.55 Total: 5.36 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -2.65 Total: -8.84 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.10 Total: -46.84 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.07 Total: -8.31 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -2.95 Total: -3.95 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.89 -9.91 -40.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585116232.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.951 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds