Wall clock time and date at job start Tue Mar 31 2020 06:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 109.47391 * 2 1 4 4 C 1.50696 * 109.47017 * 119.99621 * 2 1 3 5 5 H 1.08005 * 119.99733 * 120.00158 * 4 2 1 6 6 C 1.37879 * 120.00662 * 300.00004 * 4 2 1 7 7 N 1.31512 * 120.00436 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99315 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.46961 * 90.00422 * 8 6 4 10 10 H 1.48497 * 109.47006 * 209.99902 * 8 6 4 11 11 H 1.48494 * 109.47466 * 330.00012 * 8 6 4 12 12 N 1.46902 * 109.47315 * 239.99828 * 2 1 3 13 13 C 1.46904 * 110.99880 * 84.99913 * 12 2 1 14 14 C 1.52997 * 109.47080 * 180.02562 * 13 12 2 15 15 C 1.50699 * 109.47264 * 179.97438 * 14 13 12 16 16 O 1.21287 * 119.99808 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00081 * 179.97438 * 15 14 13 18 18 C 1.39977 * 120.00195 * 185.52869 * 17 15 14 19 19 C 1.38837 * 120.06320 * 24.82596 * 18 17 15 20 20 C 1.38226 * 119.92447 * 179.81144 * 19 18 17 21 21 Cl 1.73602 * 119.96566 * 180.20741 * 20 19 18 22 22 C 1.38408 * 120.06723 * 0.44709 * 20 19 18 23 23 C 1.38241 * 120.13620 * 359.78583 * 22 20 19 24 24 C 1.38234 * 120.07114 * 359.97438 * 23 22 20 25 25 Cl 1.73600 * 120.03269 * 179.97438 * 24 23 22 26 26 H 1.09006 * 109.46840 * 300.00613 * 1 2 3 27 27 H 1.08999 * 109.46728 * 60.00035 * 1 2 3 28 28 H 1.08993 * 109.47287 * 180.02562 * 1 2 3 29 29 H 0.97000 * 119.99883 * 180.02562 * 7 6 4 30 30 H 1.00898 * 110.99646 * 321.04554 * 12 2 1 31 31 H 1.08998 * 109.46800 * 60.00663 * 13 12 2 32 32 H 1.09002 * 109.46765 * 300.00366 * 13 12 2 33 33 H 1.09007 * 109.47117 * 59.99979 * 14 13 12 34 34 H 1.09005 * 109.47245 * 300.00227 * 14 13 12 35 35 H 0.97008 * 119.99710 * 5.80396 * 17 15 14 36 36 H 1.07999 * 120.03695 * 0.02562 * 19 18 17 37 37 H 1.08001 * 119.93360 * 179.76842 * 22 20 19 38 38 H 1.08009 * 119.96379 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 2.1380 -0.8589 3.5566 8 14 0.6259 1.2799 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9772 1.9955 3.9069 11 1 0.8492 2.1774 1.4922 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5951 -0.5332 -3.5744 15 6 2.6589 0.4053 -4.7518 16 8 2.3275 1.5648 -4.6216 17 7 3.0852 -0.0434 -5.9490 18 6 3.2550 0.8515 -7.0119 19 6 3.4954 2.1951 -6.7582 20 6 3.6665 3.0756 -7.8100 21 17 3.9726 4.7549 -7.4939 22 6 3.5890 2.6206 -9.1148 23 6 3.3449 1.2841 -9.3705 24 6 3.1779 0.3977 -8.3230 25 17 2.8708 -1.2802 -8.6452 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.9034 -0.5277 4.4376 30 1 1.4496 -1.4979 -1.4099 31 1 2.7589 1.0461 -2.1182 32 1 1.0870 0.6163 -2.5525 33 1 1.9183 -1.3566 -3.8030 34 1 3.5904 -0.9273 -3.3691 35 1 3.2706 -0.9872 -6.0752 36 1 3.5522 2.5513 -5.7403 37 1 3.7193 3.3111 -9.9350 38 1 3.2847 0.9321 -10.3898 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585116233.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:01 Heat of formation + Delta-G solvation = -16.573091 kcal Electronic energy + Delta-G solvation = -22514.420206 eV Core-core repulsion = 18829.739898 eV Total energy + Delta-G solvation = -3684.680309 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.064 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.05589 -39.12718 -37.23685 -36.68471 -36.42970 -35.13375 -33.07198 -31.53588 -31.01781 -30.04584 -27.90554 -25.11356 -24.16776 -23.26444 -22.15899 -20.58531 -20.23690 -18.55527 -17.42610 -17.01099 -16.63272 -16.19193 -15.63172 -15.52112 -14.95918 -14.63648 -14.42964 -14.34722 -13.90175 -13.45132 -13.19652 -12.88022 -12.85859 -12.56975 -12.49432 -12.24632 -11.84308 -11.70402 -11.59782 -11.48231 -11.36302 -11.08784 -10.86366 -10.82885 -10.48978 -10.11611 -10.03537 -9.49796 -9.17992 -9.16259 -8.58894 -8.56410 -7.49556 -6.04510 -4.02048 0.43481 0.69047 1.50792 1.73568 2.26801 2.58520 3.07350 3.26775 3.38386 3.39900 4.16615 4.37131 4.41400 4.53647 4.69093 4.74660 4.94018 5.12222 5.19974 5.26110 5.34242 5.48588 5.56853 5.63081 5.70874 5.79466 6.10522 6.18188 6.22652 6.27039 6.37412 6.50569 6.75856 6.90555 7.10088 7.69267 7.74014 7.86936 8.27031 8.68068 9.05952 9.58229 11.08934 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.016341 B = 0.002467 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.109676 B =11346.685041 C =12689.991503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.184 3.816 3 H 0.035 0.965 4 C -0.499 4.499 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.885 3.115 9 H -0.281 1.281 10 H -0.296 1.296 11 H -0.269 1.269 12 N -0.673 5.673 13 C 0.071 3.929 14 C -0.136 4.136 15 C 0.518 3.482 16 O -0.508 6.508 17 N -0.673 5.673 18 C 0.182 3.818 19 C -0.117 4.117 20 C -0.008 4.008 21 Cl -0.055 7.055 22 C -0.124 4.124 23 C -0.075 4.075 24 C -0.073 4.073 25 Cl -0.057 7.057 26 H 0.045 0.955 27 H 0.027 0.973 28 H 0.054 0.946 29 H 0.263 0.737 30 H 0.330 0.670 31 H 0.075 0.925 32 H 0.029 0.971 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.417 0.583 36 H 0.168 0.832 37 H 0.143 0.857 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.977 3.152 -29.977 30.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.075 3.925 3 H 0.053 0.947 4 C -0.537 4.537 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.194 1.194 12 N -0.303 5.303 13 C -0.060 4.060 14 C -0.176 4.176 15 C 0.307 3.693 16 O -0.382 6.382 17 N -0.318 5.318 18 C 0.085 3.915 19 C -0.138 4.138 20 C -0.035 4.035 21 Cl -0.026 7.026 22 C -0.144 4.144 23 C -0.094 4.094 24 C -0.103 4.103 25 Cl -0.029 7.029 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.147 0.853 31 H 0.094 0.906 32 H 0.047 0.953 33 H 0.114 0.886 34 H 0.129 0.871 35 H 0.255 0.745 36 H 0.185 0.815 37 H 0.161 0.839 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.410 4.032 -29.386 29.857 hybrid contribution -1.572 0.371 -0.122 1.620 sum 1.838 4.403 -29.508 29.891 Atomic orbital electron populations 1.22854 1.01441 1.00882 0.99019 1.19636 0.88618 0.95213 0.89063 0.94693 1.20972 1.31268 1.13772 0.87724 0.90007 1.24935 0.95978 0.96601 0.95882 1.69879 1.45879 1.40391 0.97842 0.86907 0.80551 0.84005 0.76976 1.20775 1.22400 1.19378 1.60633 1.58004 1.08839 1.02780 1.21684 0.99582 0.95615 0.89070 1.21711 1.05456 0.98258 0.92182 1.21269 0.74961 0.89649 0.83399 1.90697 1.45339 1.18660 1.83532 1.43802 1.66500 1.11562 1.09926 1.17344 0.97956 0.90256 0.85953 1.21331 1.00479 0.90603 1.01373 1.20836 1.02106 0.86399 0.94200 1.98399 1.93892 1.14291 1.96055 1.20976 1.02503 0.95552 0.95374 1.20806 0.98427 0.91652 0.98557 1.20737 1.09758 0.86924 0.92889 1.98381 1.94313 1.14718 1.95453 0.93597 0.95408 0.92701 0.92677 0.85329 0.90603 0.95293 0.88553 0.87147 0.74537 0.81497 0.83912 0.83598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.94 8.64 37.16 0.32 -3.62 16 2 C 0.18 4.29 2.16 -68.87 -0.15 4.14 16 3 H 0.04 0.87 6.86 -51.92 -0.36 0.51 16 4 C -0.50 -13.97 9.42 -34.44 -0.32 -14.29 16 5 H 0.08 2.50 8.06 -52.48 -0.42 2.08 16 6 C 0.07 1.94 5.45 -17.82 -0.10 1.85 16 7 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 8 Si 0.88 22.10 24.37 -169.99 -4.14 17.96 16 9 H -0.28 -6.82 6.87 56.52 0.39 -6.43 16 10 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 11 H -0.27 -6.50 6.53 56.52 0.37 -6.13 16 12 N -0.67 -12.96 6.23 -107.95 -0.67 -13.64 16 13 C 0.07 1.15 4.77 -3.82 -0.02 1.13 16 14 C -0.14 -1.56 5.96 -27.89 -0.17 -1.72 16 15 C 0.52 6.20 7.64 -10.99 -0.08 6.12 16 16 O -0.51 -7.80 13.15 5.55 0.07 -7.73 16 17 N -0.67 -6.38 5.19 -9.84 -0.05 -6.43 16 18 C 0.18 1.85 6.43 -83.65 -0.54 1.31 16 19 C -0.12 -1.31 8.50 -39.36 -0.33 -1.64 16 20 C -0.01 -0.08 6.32 -39.52 -0.25 -0.33 16 21 Cl -0.06 -0.53 28.95 -51.86 -1.50 -2.04 16 22 C -0.12 -0.92 9.82 -39.52 -0.39 -1.31 16 23 C -0.08 -0.52 9.82 -39.58 -0.39 -0.91 16 24 C -0.07 -0.62 6.34 -39.32 -0.25 -0.87 16 25 Cl -0.06 -0.42 27.78 -51.86 -1.44 -1.87 16 26 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 27 H 0.03 0.52 7.45 -51.93 -0.39 0.14 16 28 H 0.05 1.12 8.13 -51.93 -0.42 0.70 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.33 5.78 8.47 -39.29 -0.33 5.45 16 31 H 0.08 1.34 8.01 -51.93 -0.42 0.93 16 32 H 0.03 0.49 7.39 -51.93 -0.38 0.10 16 33 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 34 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.42 2.93 7.76 -40.82 -0.32 2.62 16 36 H 0.17 2.18 5.79 -52.49 -0.30 1.87 16 37 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -32.05 343.33 -8.84 -40.89 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -4.38 Total: 4.66 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -2.67 Total: -10.15 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.05 Total: -46.90 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.07 Total: -7.73 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.14 Total: 17.96 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -2.94 Total: -3.90 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.05 -8.84 -40.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585116233.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.312 kcal (2) G-P(sol) polarization free energy of solvation -32.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds