Wall clock time and date at job start Tue Mar 31 2020 06:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 109.47391 * 2 1 4 4 C 1.50696 * 109.47017 * 119.99621 * 2 1 3 5 5 H 1.08005 * 119.99733 * 120.00158 * 4 2 1 6 6 C 1.37879 * 120.00662 * 300.00004 * 4 2 1 7 7 N 1.31512 * 120.00436 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99315 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.46961 * 90.00422 * 8 6 4 10 10 H 1.48497 * 109.47006 * 209.99902 * 8 6 4 11 11 H 1.48494 * 109.47466 * 330.00012 * 8 6 4 12 12 N 1.46902 * 109.47315 * 239.99828 * 2 1 3 13 13 C 1.46904 * 110.99880 * 84.99913 * 12 2 1 14 14 C 1.52997 * 109.47080 * 180.02562 * 13 12 2 15 15 C 1.50699 * 109.47264 * 179.97438 * 14 13 12 16 16 O 1.21287 * 119.99808 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00081 * 179.97438 * 15 14 13 18 18 C 1.39977 * 120.00195 * 185.52869 * 17 15 14 19 19 C 1.38837 * 120.06320 * 24.82596 * 18 17 15 20 20 C 1.38226 * 119.92447 * 179.81144 * 19 18 17 21 21 Cl 1.73602 * 119.96566 * 180.20741 * 20 19 18 22 22 C 1.38408 * 120.06723 * 0.44709 * 20 19 18 23 23 C 1.38241 * 120.13620 * 359.78583 * 22 20 19 24 24 C 1.38234 * 120.07114 * 359.97438 * 23 22 20 25 25 Cl 1.73600 * 120.03269 * 179.97438 * 24 23 22 26 26 H 1.09006 * 109.46840 * 300.00613 * 1 2 3 27 27 H 1.08999 * 109.46728 * 60.00035 * 1 2 3 28 28 H 1.08993 * 109.47287 * 180.02562 * 1 2 3 29 29 H 0.97000 * 119.99883 * 180.02562 * 7 6 4 30 30 H 1.00898 * 110.99646 * 321.04554 * 12 2 1 31 31 H 1.08998 * 109.46800 * 60.00663 * 13 12 2 32 32 H 1.09002 * 109.46765 * 300.00366 * 13 12 2 33 33 H 1.09007 * 109.47117 * 59.99979 * 14 13 12 34 34 H 1.09005 * 109.47245 * 300.00227 * 14 13 12 35 35 H 0.97008 * 119.99710 * 5.80396 * 17 15 14 36 36 H 1.07999 * 120.03695 * 0.02562 * 19 18 17 37 37 H 1.08001 * 119.93360 * 179.76842 * 22 20 19 38 38 H 1.08009 * 119.96379 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 2.1380 -0.8589 3.5566 8 14 0.6259 1.2799 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9772 1.9955 3.9069 11 1 0.8492 2.1774 1.4922 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5951 -0.5332 -3.5744 15 6 2.6589 0.4053 -4.7518 16 8 2.3275 1.5648 -4.6216 17 7 3.0852 -0.0434 -5.9490 18 6 3.2550 0.8515 -7.0119 19 6 3.4954 2.1951 -6.7582 20 6 3.6665 3.0756 -7.8100 21 17 3.9726 4.7549 -7.4939 22 6 3.5890 2.6206 -9.1148 23 6 3.3449 1.2841 -9.3705 24 6 3.1779 0.3977 -8.3230 25 17 2.8708 -1.2802 -8.6452 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.9034 -0.5277 4.4376 30 1 1.4496 -1.4979 -1.4099 31 1 2.7589 1.0461 -2.1182 32 1 1.0870 0.6163 -2.5525 33 1 1.9183 -1.3566 -3.8030 34 1 3.5904 -0.9273 -3.3691 35 1 3.2706 -0.9872 -6.0752 36 1 3.5522 2.5513 -5.7403 37 1 3.7193 3.3111 -9.9350 38 1 3.2847 0.9321 -10.3898 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585116233.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:01 Heat of formation + Delta-G solvation = -38.812016 kcal Electronic energy + Delta-G solvation = -22515.384558 eV Core-core repulsion = 18829.739898 eV Total energy + Delta-G solvation = -3685.644661 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.064 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.88237 -39.92916 -38.12483 -37.89176 -37.29021 -35.96909 -34.85957 -33.11602 -31.76597 -31.00255 -29.23326 -27.12975 -25.12226 -24.06762 -23.14800 -22.13836 -21.44739 -19.33016 -18.75962 -18.29180 -17.67810 -17.10479 -16.93173 -16.56201 -16.20328 -15.81232 -15.62394 -15.13631 -15.03664 -14.80629 -14.57148 -14.44856 -13.87790 -13.55180 -13.50641 -13.39831 -13.27090 -13.13812 -12.76430 -12.33547 -12.32971 -12.14977 -12.10442 -12.08196 -12.01214 -11.58630 -11.48526 -11.21473 -10.96338 -10.75009 -9.87543 -9.30113 -9.08318 -8.27335 -6.29095 -0.24766 0.00638 0.85424 1.04951 1.28485 1.35496 1.39854 1.44375 1.77878 2.31675 2.38704 3.06989 3.32934 3.55529 3.73701 3.94621 3.97259 4.04554 4.11520 4.25730 4.45608 4.52285 4.58194 4.64350 4.65673 4.68220 4.88301 4.92561 4.98073 5.05963 5.08949 5.13817 5.36654 5.53967 5.66760 5.98325 6.15288 6.63777 6.75702 6.79245 6.90053 7.35980 8.89780 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.016341 B = 0.002467 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.109676 B =11346.685041 C =12689.991503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.186 3.814 3 H 0.021 0.979 4 C -0.501 4.501 5 H 0.042 0.958 6 C 0.011 3.989 7 N -0.949 5.949 8 Si 0.947 3.053 9 H -0.265 1.265 10 H -0.299 1.299 11 H -0.256 1.256 12 N -0.679 5.679 13 C 0.075 3.925 14 C -0.125 4.125 15 C 0.521 3.479 16 O -0.548 6.548 17 N -0.659 5.659 18 C 0.165 3.835 19 C -0.137 4.137 20 C -0.019 4.019 21 Cl -0.062 7.062 22 C -0.114 4.114 23 C -0.066 4.066 24 C -0.073 4.073 25 Cl -0.046 7.046 26 H 0.034 0.966 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.265 0.735 30 H 0.342 0.658 31 H 0.053 0.947 32 H 0.026 0.974 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.429 0.571 36 H 0.142 0.858 37 H 0.170 0.830 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.013 3.133 -33.093 33.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.076 3.924 3 H 0.039 0.961 4 C -0.540 4.540 5 H 0.060 0.940 6 C -0.186 4.186 7 N -0.590 5.590 8 Si 0.775 3.225 9 H -0.191 1.191 10 H -0.227 1.227 11 H -0.181 1.181 12 N -0.309 5.309 13 C -0.055 4.055 14 C -0.164 4.164 15 C 0.311 3.689 16 O -0.425 6.425 17 N -0.305 5.305 18 C 0.068 3.932 19 C -0.158 4.158 20 C -0.047 4.047 21 Cl -0.033 7.033 22 C -0.134 4.134 23 C -0.085 4.085 24 C -0.102 4.102 25 Cl -0.017 7.017 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.160 0.840 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.269 0.731 36 H 0.160 0.840 37 H 0.187 0.813 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.453 3.976 -32.559 32.893 hybrid contribution -1.179 0.294 0.727 1.416 sum 1.274 4.270 -31.832 32.142 Atomic orbital electron populations 1.22718 0.99429 1.01708 0.99767 1.19394 0.90063 0.93971 0.88933 0.96060 1.21263 1.30223 1.12602 0.89924 0.93952 1.25746 0.97549 0.99774 0.95530 1.70028 1.47932 1.42527 0.98505 0.85885 0.79319 0.80266 0.77028 1.19141 1.22652 1.18096 1.60424 1.58179 1.09560 1.02764 1.21598 0.99157 0.95076 0.89646 1.21575 1.06734 0.98194 0.89942 1.21247 0.74571 0.88979 0.84095 1.90700 1.47363 1.20197 1.84200 1.43572 1.65647 1.12137 1.09176 1.17425 0.99114 0.89991 0.86712 1.21189 1.02257 0.91654 1.00736 1.20979 1.02819 0.85962 0.94913 1.98392 1.93979 1.14778 1.96198 1.21304 1.00805 0.96289 0.94974 1.21204 0.96626 0.91073 0.99629 1.20856 1.09105 0.87791 0.92468 1.98389 1.94194 1.13786 1.95310 0.94731 0.92608 0.91922 0.92586 0.83950 0.92799 0.95599 0.85509 0.85828 0.73103 0.84006 0.81280 0.80460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.27 8.64 71.98 0.62 -6.65 16 2 C 0.19 8.61 2.16 44.17 0.10 8.71 16 3 H 0.02 1.05 6.86 -2.38 -0.02 1.04 16 4 C -0.50 -28.60 9.42 25.60 0.24 -28.36 16 5 H 0.04 2.68 8.06 -2.91 -0.02 2.66 16 6 C 0.01 0.64 5.45 84.66 0.46 1.10 16 7 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 8 Si 0.95 45.65 24.37 68.60 1.67 47.32 16 9 H -0.27 -12.07 6.87 99.48 0.68 -11.38 16 10 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 11 H -0.26 -11.75 6.53 99.48 0.65 -11.10 16 12 N -0.68 -25.60 6.23 -495.44 -3.09 -28.69 16 13 C 0.08 2.37 4.77 86.30 0.41 2.78 16 14 C -0.12 -2.64 5.96 29.85 0.18 -2.46 16 15 C 0.52 12.05 7.64 87.66 0.67 12.72 16 16 O -0.55 -17.00 13.15 -3.05 -0.04 -17.04 16 17 N -0.66 -11.63 5.19 -303.43 -1.58 -13.20 16 18 C 0.16 3.15 6.43 38.15 0.25 3.40 16 19 C -0.14 -3.06 8.50 22.41 0.19 -2.87 16 20 C -0.02 -0.36 6.32 22.31 0.14 -0.21 16 21 Cl -0.06 -1.19 28.95 -2.72 -0.08 -1.26 16 22 C -0.11 -1.40 9.82 22.31 0.22 -1.18 16 23 C -0.07 -0.71 9.82 22.27 0.22 -0.49 16 24 C -0.07 -1.05 6.34 22.44 0.14 -0.91 16 25 Cl -0.05 -0.55 27.78 -2.72 -0.08 -0.63 16 26 H 0.03 1.49 3.27 -2.38 -0.01 1.48 16 27 H 0.05 1.96 7.45 -2.39 -0.02 1.95 16 28 H 0.06 2.44 8.13 -2.39 -0.02 2.42 16 29 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 30 H 0.34 11.44 8.47 -89.70 -0.76 10.68 16 31 H 0.05 1.93 8.01 -2.39 -0.02 1.91 16 32 H 0.03 0.84 7.39 -2.39 -0.02 0.82 16 33 H 0.13 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.12 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.43 5.14 7.76 -92.70 -0.72 4.43 16 36 H 0.14 3.91 5.79 -2.91 -0.02 3.89 16 37 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 38 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 Total: -1.00 -71.71 343.33 0.52 -71.20 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -0.43 Total: 16.09 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 3.84 Total: -14.45 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -4.36 Total: -101.23 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.04 Total: -17.04 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.67 Total: 47.32 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.15 Total: -1.89 kcal Total: -71.71 0.52 -71.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585116233.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.388 kcal (2) G-P(sol) polarization free energy of solvation -71.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds