Wall clock time and date at job start Tue Mar 31 2020 05:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99961 * 2 1 4 4 C 1.53001 * 109.46996 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47311 * 64.99633 * 4 3 2 6 6 C 1.42900 * 114.00056 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47049 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47580 * 64.99924 * 7 6 5 9 9 C 1.46500 * 119.99964 * 270.00103 * 8 7 6 10 10 C 1.34774 * 120.00211 * 89.99942 * 8 7 6 11 11 O 1.21586 * 119.99704 * 359.97438 * 10 8 7 12 12 N 1.34774 * 120.00303 * 180.02562 * 10 8 7 13 13 C 1.46493 * 120.00256 * 180.02562 * 12 10 8 14 14 C 1.53349 * 109.42022 * 275.12556 * 13 12 10 15 15 C 1.53196 * 109.15353 * 178.67345 * 14 13 12 16 16 N 1.46928 * 108.89135 * 54.57497 * 15 14 13 17 17 C 1.36936 * 120.63013 * 126.29699 * 16 15 14 18 18 H 1.07999 * 120.00022 * 331.83633 * 17 16 15 19 19 C 1.38813 * 120.00005 * 151.82709 * 17 16 15 20 20 N 1.31618 * 120.00004 * 343.09585 * 19 17 16 21 21 Si 1.86806 * 119.99953 * 163.09475 * 19 17 16 22 22 H 1.48494 * 109.47083 * 60.00061 * 21 19 17 23 23 H 1.48500 * 109.46851 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47024 * 300.00112 * 21 19 17 25 25 C 1.46924 * 118.73859 * 306.32337 * 16 15 14 26 26 C 1.53044 * 109.46300 * 154.99736 * 13 12 10 27 27 H 1.08997 * 109.47561 * 299.99878 * 1 2 3 28 28 H 1.08998 * 109.47201 * 60.00430 * 1 2 3 29 29 H 1.09004 * 109.47189 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47211 * 59.99576 * 3 2 1 31 31 H 1.09004 * 109.47032 * 299.99688 * 3 2 1 32 32 H 1.08996 * 109.46963 * 304.99612 * 4 3 2 33 33 H 1.09002 * 109.46742 * 184.99664 * 4 3 2 34 34 H 1.08995 * 109.47266 * 60.00151 * 6 5 4 35 35 H 1.09004 * 109.47144 * 299.99840 * 6 5 4 36 36 H 1.09001 * 109.47032 * 304.99928 * 7 6 5 37 37 H 1.09002 * 109.46781 * 185.00065 * 7 6 5 38 38 H 1.09001 * 109.47168 * 269.99561 * 9 8 7 39 39 H 1.08998 * 109.47154 * 30.00000 * 9 8 7 40 40 H 1.09004 * 109.47347 * 149.99844 * 9 8 7 41 41 H 0.97003 * 119.99662 * 359.97438 * 12 10 8 42 42 H 1.09003 * 109.46113 * 35.02623 * 13 12 10 43 43 H 1.08998 * 109.68701 * 58.70834 * 14 13 12 44 44 H 1.09000 * 109.47234 * 298.50902 * 14 13 12 45 45 H 1.08996 * 109.58345 * 294.72319 * 15 14 13 46 46 H 1.08994 * 109.58644 * 174.43734 * 15 14 13 47 47 H 0.96996 * 119.99787 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.58664 * 173.39523 * 25 16 15 49 49 H 1.08996 * 109.58580 * 293.67452 * 25 16 15 50 50 H 1.08992 * 109.49619 * 61.43083 * 26 13 12 51 51 H 1.08999 * 109.52313 * 301.35096 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3812 0.4201 -1.3250 7 6 5.7246 -0.2332 -2.6652 8 7 5.3559 0.6705 -3.7578 9 6 4.0159 0.6003 -4.3457 10 6 6.2493 1.5664 -4.2220 11 8 7.3613 1.6249 -3.7337 12 7 5.9099 2.3980 -5.2267 13 6 6.8813 3.3715 -5.7317 14 6 6.8362 4.6344 -4.8630 15 6 7.8770 5.6346 -5.3759 16 7 7.6413 5.8752 -6.8061 17 6 7.4856 7.1494 -7.2828 18 1 7.0871 7.9212 -6.6410 19 6 7.8403 7.4491 -8.5910 20 7 8.6193 6.6304 -9.2657 21 14 7.2120 9.0145 -9.3938 22 1 7.6787 10.1909 -8.6171 23 1 7.7299 9.1007 -10.7829 24 1 5.7273 8.9959 -9.4199 25 6 7.5751 4.7226 -7.7148 26 6 6.5375 3.7311 -7.1790 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8514 0.5683 0.8409 33 1 3.9785 2.1766 0.0889 34 1 5.7359 -0.2119 -0.5109 35 1 5.8622 1.3963 -1.2632 36 1 5.1735 -1.1682 -2.7654 37 1 6.7948 -0.4359 -2.7069 38 1 4.0197 -0.1067 -5.1754 39 1 3.3042 0.2692 -3.5895 40 1 3.7267 1.5862 -4.7098 41 1 5.0227 2.3515 -5.6160 42 1 7.8816 2.9401 -5.6926 43 1 7.0591 4.3761 -3.8278 44 1 5.8433 5.0804 -4.9215 45 1 8.8774 5.2258 -5.2343 46 1 7.7843 6.5720 -4.8275 47 1 8.8668 6.8397 -10.1799 48 1 7.2807 5.0578 -8.7093 49 1 8.5516 4.2410 -7.7658 50 1 5.5474 4.1854 -7.2156 51 1 6.5467 2.8290 -7.7906 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589637113.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:49 Heat of formation + Delta-G solvation = -92.026088 kcal Electronic energy + Delta-G solvation = -29193.311410 eV Core-core repulsion = 25129.158830 eV Total energy + Delta-G solvation = -4064.152580 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.15622 -38.73991 -37.76016 -37.23730 -35.32278 -34.39132 -32.20846 -31.17741 -30.09560 -29.56677 -28.83309 -26.68989 -26.38144 -24.93447 -23.20927 -22.87303 -22.16893 -21.60774 -19.76357 -19.22923 -17.98466 -17.20765 -17.04371 -16.67533 -16.44019 -16.02387 -15.64637 -15.41748 -15.23558 -14.79972 -14.30645 -14.07043 -13.88729 -13.69675 -13.50475 -13.18346 -13.02519 -12.89729 -12.62756 -12.51319 -12.37296 -12.14096 -12.09640 -11.95883 -11.62355 -11.41321 -11.20646 -11.07246 -10.77332 -10.69656 -10.45657 -10.24075 -10.08049 -10.00224 -9.97218 -9.79752 -9.70005 -9.48950 -8.80611 -8.48497 -8.34661 -6.65363 -5.77120 -3.19178 2.78322 3.32275 3.38932 3.39562 3.45151 3.46311 3.49454 4.12448 4.51393 4.63681 4.78248 4.87201 4.94896 4.97668 4.99433 5.06192 5.13315 5.14154 5.19723 5.30059 5.36834 5.37326 5.40382 5.45030 5.51985 5.56805 5.65896 5.70575 5.73157 5.95606 6.12861 6.33919 6.39928 6.44290 6.57797 6.64364 6.66144 6.73237 6.84238 6.91135 7.01438 7.03998 7.16122 7.35914 7.65249 7.81099 8.15596 8.47333 8.81902 9.23343 9.86701 10.44174 11.31811 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.018355 B = 0.002268 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.074997 B =12341.055137 C =12982.954591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.063 3.937 4 C 0.064 3.936 5 O -0.377 6.377 6 C 0.044 3.956 7 C 0.140 3.860 8 N -0.632 5.632 9 C 0.085 3.915 10 C 0.703 3.297 11 O -0.593 6.593 12 N -0.738 5.738 13 C 0.168 3.832 14 C -0.138 4.138 15 C 0.148 3.852 16 N -0.593 5.593 17 C -0.251 4.251 18 H 0.065 0.935 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.903 3.097 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.175 3.825 26 C -0.146 4.146 27 H 0.039 0.961 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.049 0.951 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.391 0.609 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.020 0.980 46 H 0.054 0.946 47 H 0.254 0.746 48 H 0.091 0.909 49 H 0.021 0.979 50 H 0.058 0.942 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.945 -15.314 16.326 26.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.013 4.013 4 C -0.013 4.013 5 O -0.297 6.297 6 C -0.034 4.034 7 C 0.016 3.984 8 N -0.369 5.369 9 C -0.059 4.059 10 C 0.404 3.596 11 O -0.472 6.472 12 N -0.393 5.393 13 C 0.064 3.936 14 C -0.178 4.178 15 C 0.021 3.979 16 N -0.315 5.315 17 C -0.381 4.381 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.733 3.267 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.211 1.211 25 C 0.048 3.952 26 C -0.186 4.186 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.117 0.883 38 H 0.068 0.932 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.226 0.774 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.038 0.962 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.109 0.891 49 H 0.039 0.961 50 H 0.077 0.923 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.055 -15.449 16.340 26.518 hybrid contribution -0.923 1.128 -0.368 1.503 sum -14.978 -14.321 15.972 26.164 Atomic orbital electron populations 1.22744 0.81109 1.02803 0.99921 1.87952 1.19545 1.27418 1.95388 1.22566 0.92489 0.85370 1.00893 1.22472 0.93139 0.97694 0.87956 1.87911 1.22130 1.81977 1.37642 1.23052 0.81552 1.00673 0.98095 1.21301 1.01911 0.91695 0.83470 1.46935 1.13495 1.38442 1.38076 1.21690 0.83937 1.01519 0.98764 1.15983 0.84007 0.79141 0.80455 1.90896 1.20743 1.73480 1.62061 1.45677 1.17722 1.38284 1.37602 1.20960 0.91966 0.87153 0.93524 1.22431 1.00942 0.96203 0.98261 1.20873 0.94511 0.95964 0.86586 1.44080 1.83215 1.02754 1.01498 1.19142 1.35505 0.86974 0.96487 0.91747 1.25056 0.97734 0.97920 0.99012 1.70017 1.35551 1.38111 1.11102 0.86363 0.78672 0.83218 0.78470 1.20899 1.21656 1.21096 1.20739 0.93588 0.85484 0.95386 1.22530 1.02211 1.00063 0.93763 0.94244 0.93959 0.89614 0.91950 0.92343 0.92612 0.91864 0.92556 0.92647 0.89945 0.88310 0.93208 0.90013 0.91915 0.77419 0.90132 0.92783 0.92595 0.96178 0.92698 0.93567 0.89086 0.96054 0.92319 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.62 10.67 -40.08 -0.43 -4.05 16 3 C 0.06 0.50 6.32 37.16 0.23 0.73 16 4 C 0.06 0.55 6.32 37.16 0.23 0.78 16 5 O -0.38 -4.01 9.13 -40.08 -0.37 -4.38 16 6 C 0.04 0.45 6.28 37.16 0.23 0.69 16 7 C 0.14 1.49 5.81 -4.04 -0.02 1.47 16 8 N -0.63 -7.78 2.84 -187.35 -0.53 -8.31 16 9 C 0.08 0.80 10.02 59.85 0.60 1.40 16 10 C 0.70 11.24 8.24 -86.92 -0.72 10.52 16 11 O -0.59 -11.66 15.58 5.29 0.08 -11.57 16 12 N -0.74 -11.27 4.94 -58.48 -0.29 -11.56 16 13 C 0.17 3.06 2.42 -67.73 -0.16 2.90 16 14 C -0.14 -2.62 5.68 -26.45 -0.15 -2.77 16 15 C 0.15 3.26 6.51 -3.71 -0.02 3.23 16 16 N -0.59 -15.02 2.99 -172.32 -0.52 -15.54 16 17 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 18 H 0.06 1.74 7.88 -52.49 -0.41 1.33 16 19 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 20 N -0.90 -26.23 11.20 55.49 0.62 -25.61 16 21 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.17 4.16 5.30 -3.71 -0.02 4.14 16 26 C -0.15 -2.74 5.55 -26.61 -0.15 -2.89 16 27 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 37 H 0.10 1.13 7.42 -51.93 -0.39 0.74 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.74 7.11 -51.93 -0.37 0.37 16 40 H 0.06 0.56 6.36 -51.93 -0.33 0.23 16 41 H 0.39 5.00 6.33 -40.82 -0.26 4.74 16 42 H 0.08 1.66 7.58 -51.93 -0.39 1.26 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.05 1.18 7.93 -51.93 -0.41 0.77 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.09 2.40 6.06 -51.93 -0.31 2.08 16 49 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 51 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 405.57 15.07 6.11 6.11 Total: -1.00 -33.44 405.57 -8.60 -42.04 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -9.20 Total: 1.87 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 0.94 Total: 14.36 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -0.72 Total: -61.02 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.71 Total: -20.00 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.44 -8.60 -42.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589637113.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.985 kcal (2) G-P(sol) polarization free energy of solvation -33.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds