Wall clock time and date at job start Tue Mar 31 2020 05:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99961 * 2 1 4 4 C 1.53001 * 109.46996 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47311 * 64.99633 * 4 3 2 6 6 C 1.42900 * 114.00056 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47049 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47580 * 64.99924 * 7 6 5 9 9 C 1.46500 * 119.99964 * 270.00103 * 8 7 6 10 10 C 1.34774 * 120.00211 * 89.99942 * 8 7 6 11 11 O 1.21586 * 119.99704 * 359.97438 * 10 8 7 12 12 N 1.34774 * 120.00303 * 180.02562 * 10 8 7 13 13 C 1.46493 * 120.00256 * 180.02562 * 12 10 8 14 14 C 1.53349 * 109.42022 * 275.12556 * 13 12 10 15 15 C 1.53196 * 109.15353 * 178.67345 * 14 13 12 16 16 N 1.46928 * 108.89135 * 54.57497 * 15 14 13 17 17 C 1.36936 * 120.63013 * 126.29699 * 16 15 14 18 18 H 1.07999 * 120.00022 * 331.83633 * 17 16 15 19 19 C 1.38813 * 120.00005 * 151.82709 * 17 16 15 20 20 N 1.31618 * 120.00004 * 343.09585 * 19 17 16 21 21 Si 1.86806 * 119.99953 * 163.09475 * 19 17 16 22 22 H 1.48494 * 109.47083 * 60.00061 * 21 19 17 23 23 H 1.48500 * 109.46851 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47024 * 300.00112 * 21 19 17 25 25 C 1.46924 * 118.73859 * 306.32337 * 16 15 14 26 26 C 1.53044 * 109.46300 * 154.99736 * 13 12 10 27 27 H 1.08997 * 109.47561 * 299.99878 * 1 2 3 28 28 H 1.08998 * 109.47201 * 60.00430 * 1 2 3 29 29 H 1.09004 * 109.47189 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47211 * 59.99576 * 3 2 1 31 31 H 1.09004 * 109.47032 * 299.99688 * 3 2 1 32 32 H 1.08996 * 109.46963 * 304.99612 * 4 3 2 33 33 H 1.09002 * 109.46742 * 184.99664 * 4 3 2 34 34 H 1.08995 * 109.47266 * 60.00151 * 6 5 4 35 35 H 1.09004 * 109.47144 * 299.99840 * 6 5 4 36 36 H 1.09001 * 109.47032 * 304.99928 * 7 6 5 37 37 H 1.09002 * 109.46781 * 185.00065 * 7 6 5 38 38 H 1.09001 * 109.47168 * 269.99561 * 9 8 7 39 39 H 1.08998 * 109.47154 * 30.00000 * 9 8 7 40 40 H 1.09004 * 109.47347 * 149.99844 * 9 8 7 41 41 H 0.97003 * 119.99662 * 359.97438 * 12 10 8 42 42 H 1.09003 * 109.46113 * 35.02623 * 13 12 10 43 43 H 1.08998 * 109.68701 * 58.70834 * 14 13 12 44 44 H 1.09000 * 109.47234 * 298.50902 * 14 13 12 45 45 H 1.08996 * 109.58345 * 294.72319 * 15 14 13 46 46 H 1.08994 * 109.58644 * 174.43734 * 15 14 13 47 47 H 0.96996 * 119.99787 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.58664 * 173.39523 * 25 16 15 49 49 H 1.08996 * 109.58580 * 293.67452 * 25 16 15 50 50 H 1.08992 * 109.49619 * 61.43083 * 26 13 12 51 51 H 1.08999 * 109.52313 * 301.35096 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3812 0.4201 -1.3250 7 6 5.7246 -0.2332 -2.6652 8 7 5.3559 0.6705 -3.7578 9 6 4.0159 0.6003 -4.3457 10 6 6.2493 1.5664 -4.2220 11 8 7.3613 1.6249 -3.7337 12 7 5.9099 2.3980 -5.2267 13 6 6.8813 3.3715 -5.7317 14 6 6.8362 4.6344 -4.8630 15 6 7.8770 5.6346 -5.3759 16 7 7.6413 5.8752 -6.8061 17 6 7.4856 7.1494 -7.2828 18 1 7.0871 7.9212 -6.6410 19 6 7.8403 7.4491 -8.5910 20 7 8.6193 6.6304 -9.2657 21 14 7.2120 9.0145 -9.3938 22 1 7.6787 10.1909 -8.6171 23 1 7.7299 9.1007 -10.7829 24 1 5.7273 8.9959 -9.4199 25 6 7.5751 4.7226 -7.7148 26 6 6.5375 3.7311 -7.1790 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8514 0.5683 0.8409 33 1 3.9785 2.1766 0.0889 34 1 5.7359 -0.2119 -0.5109 35 1 5.8622 1.3963 -1.2632 36 1 5.1735 -1.1682 -2.7654 37 1 6.7948 -0.4359 -2.7069 38 1 4.0197 -0.1067 -5.1754 39 1 3.3042 0.2692 -3.5895 40 1 3.7267 1.5862 -4.7098 41 1 5.0227 2.3515 -5.6160 42 1 7.8816 2.9401 -5.6926 43 1 7.0591 4.3761 -3.8278 44 1 5.8433 5.0804 -4.9215 45 1 8.8774 5.2258 -5.2343 46 1 7.7843 6.5720 -4.8275 47 1 8.8668 6.8397 -10.1799 48 1 7.2807 5.0578 -8.7093 49 1 8.5516 4.2410 -7.7658 50 1 5.5474 4.1854 -7.2156 51 1 6.5467 2.8290 -7.7906 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589637113.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:48 Heat of formation + Delta-G solvation = -114.600675 kcal Electronic energy + Delta-G solvation = -29194.290318 eV Core-core repulsion = 25129.158830 eV Total energy + Delta-G solvation = -4065.131487 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.37298 -39.52789 -39.08674 -38.17348 -36.42776 -35.99648 -33.93652 -32.21341 -31.65277 -31.03076 -29.87094 -27.51524 -27.10581 -26.67282 -24.43046 -23.86972 -23.49105 -23.13453 -21.18366 -20.69908 -19.22965 -18.52612 -17.92094 -17.72088 -17.51970 -16.96744 -16.77279 -16.33002 -16.27524 -16.08310 -15.72765 -15.36862 -15.30434 -14.94118 -14.88610 -14.71098 -14.27842 -14.04357 -13.85393 -13.70248 -13.32192 -13.19938 -13.01143 -12.94454 -12.83946 -12.64316 -12.55575 -12.49895 -12.23022 -12.20251 -12.02847 -11.89067 -11.86559 -11.54858 -11.36847 -11.14977 -10.64363 -10.56543 -10.54292 -10.10211 -9.46723 -8.70367 -7.86958 -5.32848 1.49297 1.51109 1.58432 1.68301 2.16389 2.52728 2.69547 2.86837 3.01235 3.29222 3.66751 3.90004 4.01972 4.06289 4.13939 4.18218 4.21246 4.32803 4.34690 4.42347 4.46096 4.46644 4.47501 4.57214 4.59892 4.65190 4.65939 4.73410 4.78765 4.81126 4.86264 4.88874 4.89485 4.99994 5.02134 5.06786 5.16116 5.29345 5.46920 5.55212 5.63061 5.65045 5.71305 5.96336 6.17397 6.28997 6.39639 7.01069 7.14979 7.60386 7.84369 8.37897 9.20131 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.018355 B = 0.002268 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.074997 B =12341.055137 C =12982.954591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.063 3.937 4 C 0.058 3.942 5 O -0.389 6.389 6 C 0.051 3.949 7 C 0.136 3.864 8 N -0.625 5.625 9 C 0.083 3.917 10 C 0.698 3.302 11 O -0.635 6.635 12 N -0.728 5.728 13 C 0.181 3.819 14 C -0.121 4.121 15 C 0.145 3.855 16 N -0.609 5.609 17 C -0.264 4.264 18 H 0.067 0.933 19 C -0.050 4.050 20 N -0.935 5.935 21 Si 0.970 3.030 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.275 1.275 25 C 0.179 3.821 26 C -0.127 4.127 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.032 0.968 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.406 0.594 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.007 0.993 46 H 0.057 0.943 47 H 0.251 0.749 48 H 0.064 0.936 49 H -0.005 1.005 50 H 0.069 0.931 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.488 -15.862 17.117 29.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.013 4.013 4 C -0.018 4.018 5 O -0.309 6.309 6 C -0.027 4.027 7 C 0.013 3.987 8 N -0.361 5.361 9 C -0.060 4.060 10 C 0.400 3.600 11 O -0.517 6.517 12 N -0.384 5.384 13 C 0.075 3.925 14 C -0.162 4.162 15 C 0.019 3.981 16 N -0.332 5.332 17 C -0.394 4.394 18 H 0.085 0.915 19 C -0.246 4.246 20 N -0.581 5.581 21 Si 0.798 3.202 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.201 1.201 25 C 0.053 3.947 26 C -0.167 4.167 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.125 0.875 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.244 0.756 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.025 0.975 46 H 0.076 0.924 47 H 0.060 0.940 48 H 0.082 0.918 49 H 0.013 0.987 50 H 0.088 0.912 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.669 -16.030 17.161 28.798 hybrid contribution -0.133 1.248 -0.530 1.363 sum -16.802 -14.782 16.630 27.881 Atomic orbital electron populations 1.22897 0.79687 1.03680 1.00750 1.87906 1.21228 1.28306 1.95585 1.22630 0.91817 0.85091 1.01760 1.22633 0.93872 0.97932 0.87370 1.87881 1.21936 1.82253 1.38783 1.22937 0.81575 0.99733 0.98485 1.21454 1.01753 0.92310 0.83185 1.47007 1.13892 1.37296 1.37952 1.21866 0.82237 1.02451 0.99423 1.16131 0.83968 0.79587 0.80329 1.90872 1.22765 1.74694 1.63328 1.45307 1.17805 1.37616 1.37637 1.20550 0.91571 0.87263 0.93077 1.22216 1.00043 0.95666 0.98230 1.20952 0.94905 0.96978 0.85253 1.44336 1.83514 1.02619 1.02749 1.19477 1.35090 0.87993 0.96860 0.91516 1.25841 0.98049 1.01144 0.99554 1.70180 1.36876 1.39979 1.11080 0.85303 0.78300 0.79571 0.77015 1.20298 1.22054 1.20121 1.20564 0.93748 0.86002 0.94410 1.22247 1.00698 0.99543 0.94179 0.92980 0.93536 0.88818 0.89927 0.92577 0.92092 0.91374 0.90709 0.94961 0.87506 0.89420 0.91459 0.89327 0.91310 0.75582 0.92678 0.92549 0.91782 0.97527 0.92440 0.93994 0.91758 0.98694 0.91228 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.03 10.67 -144.34 -1.54 -8.57 16 3 C 0.06 0.87 6.32 71.98 0.45 1.33 16 4 C 0.06 0.91 6.32 71.98 0.45 1.36 16 5 O -0.39 -7.60 9.13 -144.34 -1.32 -8.91 16 6 C 0.05 0.97 6.28 71.98 0.45 1.43 16 7 C 0.14 2.69 5.81 86.38 0.50 3.19 16 8 N -0.62 -14.26 2.84 -864.92 -2.45 -16.71 16 9 C 0.08 1.32 10.02 127.77 1.28 2.60 16 10 C 0.70 21.56 8.24 179.06 1.48 23.03 16 11 O -0.63 -24.98 15.58 -3.99 -0.06 -25.04 16 12 N -0.73 -20.96 4.94 -457.20 -2.26 -23.22 16 13 C 0.18 6.46 2.42 45.12 0.11 6.57 16 14 C -0.12 -4.52 5.68 30.78 0.17 -4.35 16 15 C 0.15 6.47 6.51 86.36 0.56 7.03 16 16 N -0.61 -31.23 2.99 -699.11 -2.09 -33.32 16 17 C -0.26 -14.63 9.58 84.03 0.81 -13.82 16 18 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 19 C -0.05 -2.82 4.92 84.86 0.42 -2.40 16 20 N -0.94 -55.47 11.20 21.65 0.24 -55.23 16 21 Si 0.97 44.65 29.59 68.60 2.03 46.68 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 25 C 0.18 8.69 5.30 86.36 0.46 9.15 16 26 C -0.13 -4.65 5.55 30.67 0.17 -4.48 16 27 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.05 0.43 8.14 -2.39 -0.02 0.42 16 29 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.11 1.59 8.07 -2.39 -0.02 1.58 16 37 H 0.09 1.95 7.42 -2.39 -0.02 1.93 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 1.35 7.11 -2.39 -0.02 1.33 16 40 H 0.07 1.02 6.36 -2.38 -0.02 1.01 16 41 H 0.41 9.25 6.33 -92.71 -0.59 8.66 16 42 H 0.05 2.29 7.58 -2.39 -0.02 2.27 16 43 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 46 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 47 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 48 H 0.06 3.46 6.06 -2.39 -0.01 3.45 16 49 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 50 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 51 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -72.92 405.57 1.42 -71.50 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.31 Total: 20.67 kcal Atomic # 6 Polarization: 23.59 SS G_CDS: 8.57 Total: 32.15 kcal Atomic # 7 Polarization: -121.92 SS G_CDS: -6.56 Total: -128.48 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -2.92 Total: -42.52 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -72.92 1.42 -71.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589637113.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.104 kcal (2) G-P(sol) polarization free energy of solvation -72.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds