Wall clock time and date at job start Tue Mar 31 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99470 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99608 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00439 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47278 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47274 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99699 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00080 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99969 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47148 * 179.72251 * 14 13 11 16 16 C 1.38219 * 120.01388 * 104.72657 * 15 14 13 17 17 C 1.38222 * 120.02418 * 179.72188 * 16 15 14 18 18 S 1.76207 * 119.97396 * 180.27247 * 17 16 15 19 19 N 1.65593 * 107.22080 * 270.27516 * 18 17 16 20 20 O 1.42100 * 106.40022 * 23.81607 * 18 17 16 21 21 O 1.42101 * 106.39871 * 156.73318 * 18 17 16 22 22 C 1.38262 * 120.05143 * 0.54877 * 17 16 15 23 23 C 1.38173 * 120.02974 * 359.72733 * 22 17 16 24 24 C 1.38442 * 120.01223 * 284.99692 * 15 14 13 25 25 F 1.35103 * 120.02346 * 0.02562 * 24 15 14 26 26 H 0.97000 * 120.00722 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46433 * 60.00330 * 9 7 2 28 28 H 1.08993 * 109.47343 * 300.00510 * 9 7 2 29 29 H 1.09004 * 109.47116 * 60.00752 * 10 9 7 30 30 H 1.08998 * 109.47794 * 300.00664 * 10 9 7 31 31 H 0.97005 * 120.00161 * 359.72088 * 13 11 10 32 32 H 1.09001 * 109.46512 * 299.72412 * 14 13 11 33 33 H 1.08998 * 109.47174 * 59.71534 * 14 13 11 34 34 H 1.08000 * 119.98942 * 359.97438 * 16 15 14 35 35 H 0.97001 * 119.99974 * 149.99995 * 19 18 17 36 36 H 0.97001 * 119.99799 * 330.00280 * 19 18 17 37 37 H 1.08004 * 119.98975 * 179.70558 * 22 17 16 38 38 H 1.07993 * 120.01908 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6363 0.0014 11 6 5.5286 -2.6363 0.0014 12 8 6.1350 -1.5860 0.0009 13 7 6.2025 -3.8035 0.0020 14 6 7.6676 -3.8034 0.0027 15 6 8.1700 -5.2242 0.0102 16 6 8.6878 -5.7805 -1.1443 17 6 9.1539 -7.0818 -1.1362 18 16 9.8204 -7.7873 -2.6068 19 7 8.5656 -8.4951 -3.4233 20 8 10.2594 -6.7004 -3.4100 21 8 10.6763 -8.8434 -2.1930 22 6 9.0924 -7.8320 0.0235 23 6 8.5699 -7.2799 1.1774 24 6 8.1078 -5.9745 1.1720 25 9 7.5964 -5.4336 2.2995 26 1 -0.4851 0.8400 -0.0004 27 1 3.8751 -0.6795 0.8895 28 1 3.8746 -0.6807 -0.8904 29 1 3.6580 -3.1512 -0.8880 30 1 3.6586 -3.1493 0.8919 31 1 5.7176 -4.6436 0.0066 32 1 8.0312 -3.2941 -0.8898 33 1 8.0305 -3.2849 0.8901 34 1 8.7319 -5.1970 -2.0520 35 1 8.5869 -8.5509 -4.3915 36 1 7.8091 -8.8539 -2.9334 37 1 9.4525 -8.8503 0.0275 38 1 8.5216 -7.8663 2.0830 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589702294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:45 Heat of formation + Delta-G solvation = -140.110289 kcal Electronic energy + Delta-G solvation = -24967.442294 eV Core-core repulsion = 20851.112341 eV Total energy + Delta-G solvation = -4116.329952 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.57593 -40.06525 -39.10526 -37.65923 -36.32719 -35.16479 -33.71646 -33.51164 -32.11698 -31.55853 -31.14562 -27.33710 -25.44088 -23.95960 -22.74448 -21.28799 -20.05600 -19.79452 -18.70391 -18.16846 -17.88157 -17.47627 -17.29343 -16.65792 -16.38141 -15.98439 -15.68143 -15.64753 -15.21730 -14.90493 -14.18365 -14.12163 -13.91023 -13.60002 -13.46443 -13.27480 -13.04566 -12.67112 -12.58579 -12.57625 -12.46629 -12.24434 -11.74392 -11.56566 -11.44319 -11.00149 -10.98027 -10.20332 -10.08537 -9.94302 -9.83239 -9.77508 -9.24795 -9.18064 -9.03470 -8.52594 -6.04924 -4.03926 -0.22150 0.04006 0.41710 2.39617 2.71205 3.03421 3.17497 3.36735 3.42843 3.44229 3.48516 3.54283 3.75649 4.02183 4.11542 4.38426 4.49346 4.62072 4.79159 5.03841 5.14757 5.24655 5.30464 5.30585 5.35411 5.45617 5.57537 5.59787 6.02680 6.04378 6.04949 6.42022 6.49502 6.64458 7.33401 7.40569 7.62931 7.76617 8.46169 8.56389 8.97709 9.58046 11.07843 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.020205 B = 0.002357 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.438567 B =11874.813975 C =12418.666377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.526 4.526 8 H 0.072 0.928 9 C 0.001 3.999 10 C -0.121 4.121 11 C 0.512 3.488 12 O -0.537 6.537 13 N -0.740 5.740 14 C 0.159 3.841 15 C -0.158 4.158 16 C 0.031 3.969 17 C -0.695 4.695 18 S 2.707 3.293 19 N -1.247 6.247 20 O -0.958 6.958 21 O -0.959 6.959 22 C 0.012 3.988 23 C -0.176 4.176 24 C 0.177 3.823 25 F -0.118 7.118 26 H 0.263 0.737 27 H 0.024 0.976 28 H 0.020 0.980 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.399 0.601 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.156 0.844 35 H 0.423 0.577 36 H 0.418 0.582 37 H 0.154 0.846 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.082 -22.753 -2.740 30.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.090 0.910 9 C -0.037 4.037 10 C -0.161 4.161 11 C 0.301 3.699 12 O -0.412 6.412 13 N -0.395 5.395 14 C 0.036 3.964 15 C -0.160 4.160 16 C 0.011 3.989 17 C -0.782 4.782 18 S 2.794 3.206 19 N -0.922 5.922 20 O -0.948 6.948 21 O -0.948 6.948 22 C -0.007 4.007 23 C -0.196 4.196 24 C 0.157 3.843 25 F -0.096 7.096 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.233 0.767 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.174 0.826 35 H 0.253 0.747 36 H 0.245 0.755 37 H 0.172 0.828 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 21.386 -21.688 -2.854 30.592 hybrid contribution -0.847 0.519 0.655 1.190 sum 20.539 -21.169 -2.200 29.577 Atomic orbital electron populations 1.69907 1.06303 1.27010 1.51003 1.24972 0.94715 0.99262 0.94301 0.86790 0.80610 0.83349 0.78762 1.20215 1.21440 1.18531 1.21098 0.89239 0.94563 1.51439 0.90952 1.19373 0.96449 0.90116 0.97720 1.21676 0.87592 1.03412 1.03404 1.21596 0.91629 0.82530 0.74161 1.90668 1.70743 1.31331 1.48456 1.46214 1.05438 1.09592 1.78212 1.20065 0.81975 0.90273 1.04131 1.20184 1.05026 0.97779 0.93035 1.20830 0.88073 0.92039 0.97946 1.30788 1.21614 1.05910 1.19894 1.01472 0.72595 0.73673 0.72837 1.53102 1.40636 1.78764 1.19687 1.93627 1.79309 1.54449 1.67383 1.93626 1.62502 1.55993 1.82717 1.20879 0.90245 0.99478 0.90130 1.21324 1.03157 0.94248 1.00833 1.17939 0.92390 0.91776 0.82216 1.91614 1.83415 1.85840 1.48717 0.92693 0.95798 0.96213 0.89529 0.89529 0.76745 0.89707 0.90091 0.82627 0.74663 0.75482 0.82810 0.83205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.26 -6.67 6.54 56.52 0.37 -6.30 16 7 C -0.53 -14.92 9.66 -34.44 -0.33 -15.25 16 8 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 9 C 0.00 0.03 3.33 -27.89 -0.09 -0.06 16 10 C -0.12 -2.28 5.64 -27.88 -0.16 -2.44 16 11 C 0.51 9.02 7.83 -10.98 -0.09 8.93 16 12 O -0.54 -11.62 15.98 5.56 0.09 -11.53 16 13 N -0.74 -9.39 5.55 -61.47 -0.34 -9.73 16 14 C 0.16 1.79 5.48 -5.19 -0.03 1.76 16 15 C -0.16 -1.38 5.25 -104.56 -0.55 -1.93 16 16 C 0.03 0.23 9.14 -39.59 -0.36 -0.13 16 17 C -0.70 -4.38 5.97 -39.58 -0.24 -4.62 16 18 S 2.71 16.92 6.28 -107.50 -0.68 16.24 16 19 N -1.25 -3.47 9.52 60.35 0.57 -2.89 16 20 O -0.96 -9.35 17.29 -57.17 -0.99 -10.34 16 21 O -0.96 -8.69 17.28 -57.17 -0.99 -9.68 16 22 C 0.01 0.07 9.52 -39.60 -0.38 -0.31 16 23 C -0.18 -1.09 10.03 -39.51 -0.40 -1.48 16 24 C 0.18 1.49 7.25 -39.42 -0.29 1.21 16 25 F -0.12 -1.20 16.76 2.25 0.04 -1.16 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.02 0.62 7.15 -51.93 -0.37 0.25 16 28 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 29 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 30 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.40 4.00 8.46 -40.82 -0.35 3.65 16 32 H 0.08 0.94 7.95 -51.93 -0.41 0.53 16 33 H 0.08 1.00 8.08 -51.93 -0.42 0.58 16 34 H 0.16 1.03 7.57 -52.49 -0.40 0.64 16 35 H 0.42 0.69 8.96 -34.46 -0.31 0.38 16 36 H 0.42 0.26 8.96 -34.46 -0.31 -0.05 16 37 H 0.15 0.51 7.62 -52.48 -0.40 0.11 16 38 H 0.15 0.61 8.06 -52.49 -0.42 0.18 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -39.54 348.35 -8.15 -47.68 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -4.21 Total: -2.19 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -3.00 Total: -12.39 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 1.01 Total: -39.73 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -1.89 Total: -31.54 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Atomic # 16 Polarization: 16.92 SS G_CDS: -0.68 Total: 16.24 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -39.54 -8.15 -47.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589702294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.427 kcal (2) G-P(sol) polarization free energy of solvation -39.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds